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The map label for this gene is scoP [H]

Identifier: 66043554

GI number: 66043554

Start: 302686

End: 303318

Strand: Reverse

Name: scoP [H]

Synonym: Psyr_0284

Alternate gene names: 66043554

Gene position: 303318-302686 (Counterclockwise)

Preceding gene: 66043555

Following gene: 66043550

Centisome position: 4.98

GC content: 60.98

Gene sequence:

>633_bases
ATGACCCGTACTCAGAAAAGCGTTTTCATTGCTGCCGCCATCGTCGCCCTGATTCTGGGTGTGATTCTCAGTCAGGTGCT
GCCCGGCCGCAGCTCACAGGATCAGGCGGCGCTCAACGACGCCGGTATTGTCCTGCTCCCCAAAAGCCGCCAATTGCCGG
CCCTGAGCATGACCGACCAGAACGGCGCGGCCGTGCCCCTTGATGGCTTGAAAGACCAATGGACGCTGATGTTCTTCGGC
TACACCTTCTGCCCGGACATCTGCCCCACGACCCTGGCGCAGATCAAGCAGATCAGGTCCGAGCTGCCCGAAGAGACAGT
CAAGCGCATGCGGGTAGTGCTGGTCAGCGTCGACCCGAACCGCGACACACCGCAGCAGCTCAAGCAATACCTGGGCTACT
TCGACCCGCAGTACATCGGCCTGACGGCACCTGTCGCTGATATCCAGACACTGGCCAATGCCGTGAGCATCCCGTTCATT
CCGGCCGATACCGGTAAACCGAACTACTTCGTCGACCACAGCGGTAACCTGGCCCTGATCGGCCCGGACGGCACGCAGCG
CGGCTTTATCCGCGCACCGCTGAACAACAGGAAGCTGGTGAAGCAATTGCCGGGGTTGCTGGGAAGGGATTAG

Upstream 100 bases:

>100_bases
CTATACGCTGTTCGATGTCACCACGCCCTAGACCTAGGCTCGGCGCGCAATATAGGCCATCATCCCCGGCCGCACGCCGA
TCACTACTCGCACTGACACC

Downstream 100 bases:

>100_bases
GGCCTATGAGATTCCTACGGGAGTAACCGGGGCGGCGATCCGCATTGCTCACGACGACTTGGTCCAAACGCTCTATTTCC
TGGAGGCTTTACCGGCCTCT

Product: electron transport protein SCO1/SenC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MTRTQKSVFIAAAIVALILGVILSQVLPGRSSQDQAALNDAGIVLLPKSRQLPALSMTDQNGAAVPLDGLKDQWTLMFFG
YTFCPDICPTTLAQIKQIRSELPEETVKRMRVVLVSVDPNRDTPQQLKQYLGYFDPQYIGLTAPVADIQTLANAVSIPFI
PADTGKPNYFVDHSGNLALIGPDGTQRGFIRAPLNNRKLVKQLPGLLGRD

Sequences:

>Translated_210_residues
MTRTQKSVFIAAAIVALILGVILSQVLPGRSSQDQAALNDAGIVLLPKSRQLPALSMTDQNGAAVPLDGLKDQWTLMFFG
YTFCPDICPTTLAQIKQIRSELPEETVKRMRVVLVSVDPNRDTPQQLKQYLGYFDPQYIGLTAPVADIQTLANAVSIPFI
PADTGKPNYFVDHSGNLALIGPDGTQRGFIRAPLNNRKLVKQLPGLLGRD
>Mature_209_residues
TRTQKSVFIAAAIVALILGVILSQVLPGRSSQDQAALNDAGIVLLPKSRQLPALSMTDQNGAAVPLDGLKDQWTLMFFGY
TFCPDICPTTLAQIKQIRSELPEETVKRMRVVLVSVDPNRDTPQQLKQYLGYFDPQYIGLTAPVADIQTLANAVSIPFIP
ADTGKPNYFVDHSGNLALIGPDGTQRGFIRAPLNNRKLVKQLPGLLGRD

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI4759068, Length=132, Percent_Identity=32.5757575757576, Blast_Score=87, Evalue=8e-18,
Organism=Homo sapiens, GI281182727, Length=133, Percent_Identity=32.3308270676692, Blast_Score=85, Evalue=5e-17,
Organism=Homo sapiens, GI281182722, Length=133, Percent_Identity=32.3308270676692, Blast_Score=85, Evalue=5e-17,
Organism=Homo sapiens, GI281182716, Length=133, Percent_Identity=32.3308270676692, Blast_Score=85, Evalue=5e-17,
Organism=Homo sapiens, GI153791313, Length=133, Percent_Identity=32.3308270676692, Blast_Score=85, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17531419, Length=142, Percent_Identity=27.4647887323944, Blast_Score=68, Evalue=4e-12,
Organism=Saccharomyces cerevisiae, GI6319498, Length=132, Percent_Identity=36.3636363636364, Blast_Score=97, Evalue=2e-21,
Organism=Saccharomyces cerevisiae, GI6319511, Length=132, Percent_Identity=28.7878787878788, Blast_Score=74, Evalue=2e-14,
Organism=Drosophila melanogaster, GI19920710, Length=163, Percent_Identity=28.2208588957055, Blast_Score=86, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 22884; Mature: 22753

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRTQKSVFIAAAIVALILGVILSQVLPGRSSQDQAALNDAGIVLLPKSRQLPALSMTDQ
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCEEEECCCCCCCEEEECCC
NGAAVPLDGLKDQWTLMFFGYTFCPDICPTTLAQIKQIRSELPEETVKRMRVVLVSVDPN
CCCCCCCCCCCCCEEEEEECHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHEEEEEEECCC
RDTPQQLKQYLGYFDPQYIGLTAPVADIQTLANAVSIPFIPADTGKPNYFVDHSGNLALI
CCCHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCEEECCCCCCCEEEECCCCEEEE
GPDGTQRGFIRAPLNNRKLVKQLPGLLGRD
CCCCCCCCEEECCCCCHHHHHHCCHHCCCC
>Mature Secondary Structure 
TRTQKSVFIAAAIVALILGVILSQVLPGRSSQDQAALNDAGIVLLPKSRQLPALSMTDQ
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCEEEECCCCCCCEEEECCC
NGAAVPLDGLKDQWTLMFFGYTFCPDICPTTLAQIKQIRSELPEETVKRMRVVLVSVDPN
CCCCCCCCCCCCCEEEEEECHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHEEEEEEECCC
RDTPQQLKQYLGYFDPQYIGLTAPVADIQTLANAVSIPFIPADTGKPNYFVDHSGNLALI
CCCHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCEEECCCCCCCEEEECCCCEEEE
GPDGTQRGFIRAPLNNRKLVKQLPGLLGRD
CCCCCCCCEEECCCCCHHHHHHCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8226670 [H]