| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
Click here to switch to the map view.
The map label for this gene is katE [H]
Identifier: 66043550
GI number: 66043550
Start: 297477
End: 299627
Strand: Reverse
Name: katE [H]
Synonym: Psyr_0280
Alternate gene names: 66043550
Gene position: 299627-297477 (Counterclockwise)
Preceding gene: 66043554
Following gene: 66043545
Centisome position: 4.92
GC content: 59.93
Gene sequence:
>2151_bases ATGGCTAGCAAGAACGCACCACCTGTAACCGAAACGCCCAAGAGCGAAATGGCAGGTACCGACACCCTGGACCGTGGCAA CACCAACGAAAAGCTGGAAAGTCTCGAGCAGTTTCGCTCGGACGCGACCCAGCAGGCCCTGCGCACCAACCACGGCGTCA AGATTTCCGATAACCAGAACACCCTGAAAGTCGGCAGCCGCGGCCCATCGCTGCTCGAAGACTTCATCATGCGTGAAAAG ATCACGCACTTTGACCATGAGCGTATTCCGGAGCGTATCGTCCACGCCCGCGGTACTGCAGCACATGGTTATTTCCAGAC TTACGAAGACCATGGCGCCCTGAGTAAAGCGGGCTTCCTGCGTGATCCGGGCAAGAAGACCCCGGTGTTCGTGCGTTTCT CCACCGTTCAGGGCCCACGTGGCTCGGGCGACACCGTGCGTGACGTGCGTGGCTTTGCCGTCAAGCTCTACACCGACGAA GGCAACTTCGACCTGGTGGGCAACAACATGCCGGTGTTCTTCATTCAGGACGCGATCAAGTTTCCTGACTTCGTGCACGC GGTGAAACCCGAGCCGCACAACGAAATCCCGACTGGCGGCTCGGCTCACGACACCTTCTGGGACTTCGTGTCGCTGGTGC CGGAATCCGCGCACATGGTGCTGTGGACCATGTCCGACCGTGCGATCCCGAAAAGCCTGCGCACCATGCAGGGCTTTGGC ATCCACACCTTCCGCTTTATCAACACCGAAGGTAAGTCGAGCTTCGTGAAGTTCCACTGGAAGCCCAAGTTCGGCGTGTG CTCGCTGGTCTGGGACGAAGCGCAAAAGCTGGCCGGCAAGGACACCGATTTCCACCGCCGCGACCTGTGGGAGTCCATCG AGATGGGCGACTACCCGGAATGGGAACTGGGTGTACAGATCGTTGCCGAGGAAGACGAGCACAAGTTCGACTTCGACCTG CTCGATCCGACCAAGATCATCCCGGAAGAACTGGTACCGGTTACCCCACTGGGCAAGATGGTCCTGAACCGTAACCCGGA CAACTATTTTGCCGAGACCGAGCAGGTTGCCTTCTGCCCGGGCCACATCGTGCCGGGTATCGATTTCTCCAACGATCCGC TGCTGCAAGGTCGCCTGTTCTCCTACACCGACACGCAGATCAGCCGTCTGGGTGGGCCAAACTTCCACGAAATCCCGATC AACCGTCCGATTGCGCCGAACCACAACGGTCAGCGTGACGCACAGCATCGCACCACTATCGACAAGGGCCGCGCGTCCTA CGAGCCGAACTCGATCGATGGCGGCTGGCCGAAGGAAACCCCTGCCGGCCCGGTAGATGGCGGCTTCGAGACCTACCCTG AGCGTGTTGAAGCGCACAAGGTGCGTGAGCGCAGCGAGTCGTTCGGCGATCATTTCTCGCAGGCCACCCTGTTCTTCCAG AGCATGAGCCACCACGAGAAAGAGCACATCATCGCGGCCTACAGCTTCGAGTTGGGCAAGGTCGAGCGCGAATACATTCG TGCCCGTCAGGTCAACGAGATTCTGGCTAACATCGATATGGATCTGGCCAAGCGTGTAGCCGCCAACCTCGGCTTGCCAG CACCGGCTGCCGGTACCGTACCTGCGCGTCAGACTTCGGTAAAAGAGTCGCCGGCGCTGAGCCAGGTCAACCTGCTGTCT GGCGATATCGTTTCGCGCAAGGTTGCCATTCTCGTGGCTGACGGCGTTGACGGCAAAGCGGTCGAAGCCATGAAAGCCGC GCTGACTGCCGAGGGCGCACACGCCAAGGTATTGGGCCCGACCTCCGCACCGGTCAAGACGGCTGACGGCAAGAGCCTGC CAGTGGACGCATCGGCTGAAGGCCTGCCTTCGGTCGCGTTCGACGCAGTCTTCGTGCCGGGTGGCAAGGCTTCGATCGAA GCGCTGAAAGGCGACGGCGTGGCATTGCACTTCATCCTCGAAGCCTACAAGCACCTCAAGGCCATCTCCTTTGCCGGAGA AGCCAAAGAGCTGCTGAGTCTGCTACGCCTGGAAGAAGATGCGGGCCTGCTGGAGGTATCCGATAGCACATCGTTCAAGC CGTTCTTCCACGCGATTGCTCAGCACCGTGTGTGGGATCGTGAAGCGAAAGCCAAGGCTGTTCCGGCTTGA
Upstream 100 bases:
>100_bases GCTCCGGTCACTTCATGGATACCGTGATTTCCCGCTTACGCCAGGGAAGTCGTATTCAGCGAACCCAACTCAATGATTGG GGCGAGATAAGGAGTCTCTG
Downstream 100 bases:
>100_bases TCTGACGCTGCTACATCGCTCCCACGCTCCGGCGTGGGAGCGCCTTTCCGGACGCTCTCTCCGCCCGCTTATACTCCCGA ACACTTGTCGTTCCTCACGC
Product: hydroperoxidase II
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 716; Mature: 715
Protein sequence:
>716_residues MASKNAPPVTETPKSEMAGTDTLDRGNTNEKLESLEQFRSDATQQALRTNHGVKISDNQNTLKVGSRGPSLLEDFIMREK ITHFDHERIPERIVHARGTAAHGYFQTYEDHGALSKAGFLRDPGKKTPVFVRFSTVQGPRGSGDTVRDVRGFAVKLYTDE GNFDLVGNNMPVFFIQDAIKFPDFVHAVKPEPHNEIPTGGSAHDTFWDFVSLVPESAHMVLWTMSDRAIPKSLRTMQGFG IHTFRFINTEGKSSFVKFHWKPKFGVCSLVWDEAQKLAGKDTDFHRRDLWESIEMGDYPEWELGVQIVAEEDEHKFDFDL LDPTKIIPEELVPVTPLGKMVLNRNPDNYFAETEQVAFCPGHIVPGIDFSNDPLLQGRLFSYTDTQISRLGGPNFHEIPI NRPIAPNHNGQRDAQHRTTIDKGRASYEPNSIDGGWPKETPAGPVDGGFETYPERVEAHKVRERSESFGDHFSQATLFFQ SMSHHEKEHIIAAYSFELGKVEREYIRARQVNEILANIDMDLAKRVAANLGLPAPAAGTVPARQTSVKESPALSQVNLLS GDIVSRKVAILVADGVDGKAVEAMKAALTAEGAHAKVLGPTSAPVKTADGKSLPVDASAEGLPSVAFDAVFVPGGKASIE ALKGDGVALHFILEAYKHLKAISFAGEAKELLSLLRLEEDAGLLEVSDSTSFKPFFHAIAQHRVWDREAKAKAVPA
Sequences:
>Translated_716_residues MASKNAPPVTETPKSEMAGTDTLDRGNTNEKLESLEQFRSDATQQALRTNHGVKISDNQNTLKVGSRGPSLLEDFIMREK ITHFDHERIPERIVHARGTAAHGYFQTYEDHGALSKAGFLRDPGKKTPVFVRFSTVQGPRGSGDTVRDVRGFAVKLYTDE GNFDLVGNNMPVFFIQDAIKFPDFVHAVKPEPHNEIPTGGSAHDTFWDFVSLVPESAHMVLWTMSDRAIPKSLRTMQGFG IHTFRFINTEGKSSFVKFHWKPKFGVCSLVWDEAQKLAGKDTDFHRRDLWESIEMGDYPEWELGVQIVAEEDEHKFDFDL LDPTKIIPEELVPVTPLGKMVLNRNPDNYFAETEQVAFCPGHIVPGIDFSNDPLLQGRLFSYTDTQISRLGGPNFHEIPI NRPIAPNHNGQRDAQHRTTIDKGRASYEPNSIDGGWPKETPAGPVDGGFETYPERVEAHKVRERSESFGDHFSQATLFFQ SMSHHEKEHIIAAYSFELGKVEREYIRARQVNEILANIDMDLAKRVAANLGLPAPAAGTVPARQTSVKESPALSQVNLLS GDIVSRKVAILVADGVDGKAVEAMKAALTAEGAHAKVLGPTSAPVKTADGKSLPVDASAEGLPSVAFDAVFVPGGKASIE ALKGDGVALHFILEAYKHLKAISFAGEAKELLSLLRLEEDAGLLEVSDSTSFKPFFHAIAQHRVWDREAKAKAVPA >Mature_715_residues ASKNAPPVTETPKSEMAGTDTLDRGNTNEKLESLEQFRSDATQQALRTNHGVKISDNQNTLKVGSRGPSLLEDFIMREKI THFDHERIPERIVHARGTAAHGYFQTYEDHGALSKAGFLRDPGKKTPVFVRFSTVQGPRGSGDTVRDVRGFAVKLYTDEG NFDLVGNNMPVFFIQDAIKFPDFVHAVKPEPHNEIPTGGSAHDTFWDFVSLVPESAHMVLWTMSDRAIPKSLRTMQGFGI HTFRFINTEGKSSFVKFHWKPKFGVCSLVWDEAQKLAGKDTDFHRRDLWESIEMGDYPEWELGVQIVAEEDEHKFDFDLL DPTKIIPEELVPVTPLGKMVLNRNPDNYFAETEQVAFCPGHIVPGIDFSNDPLLQGRLFSYTDTQISRLGGPNFHEIPIN RPIAPNHNGQRDAQHRTTIDKGRASYEPNSIDGGWPKETPAGPVDGGFETYPERVEAHKVRERSESFGDHFSQATLFFQS MSHHEKEHIIAAYSFELGKVEREYIRARQVNEILANIDMDLAKRVAANLGLPAPAAGTVPARQTSVKESPALSQVNLLSG DIVSRKVAILVADGVDGKAVEAMKAALTAEGAHAKVLGPTSAPVKTADGKSLPVDASAEGLPSVAFDAVFVPGGKASIEA LKGDGVALHFILEAYKHLKAISFAGEAKELLSLLRLEEDAGLLEVSDSTSFKPFFHAIAQHRVWDREAKAKAVPA
Specific function: Decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide [H]
COG id: COG0753
COG function: function code P; Catalase
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the catalase family. HPII subfamily [H]
Homologues:
Organism=Homo sapiens, GI4557014, Length=421, Percent_Identity=44.8931116389549, Blast_Score=362, Evalue=1e-100, Organism=Escherichia coli, GI48994891, Length=695, Percent_Identity=60.7194244604317, Blast_Score=850, Evalue=0.0, Organism=Caenorhabditis elegans, GI71998444, Length=392, Percent_Identity=46.9387755102041, Blast_Score=376, Evalue=1e-104, Organism=Caenorhabditis elegans, GI25147792, Length=393, Percent_Identity=47.8371501272265, Blast_Score=372, Evalue=1e-103, Organism=Caenorhabditis elegans, GI25151141, Length=407, Percent_Identity=47.1744471744472, Blast_Score=370, Evalue=1e-102, Organism=Saccharomyces cerevisiae, GI6320462, Length=370, Percent_Identity=42.972972972973, Blast_Score=308, Evalue=2e-84, Organism=Saccharomyces cerevisiae, GI6321525, Length=339, Percent_Identity=42.1828908554572, Blast_Score=276, Evalue=1e-74, Organism=Drosophila melanogaster, GI17981717, Length=497, Percent_Identity=40.2414486921529, Blast_Score=351, Evalue=1e-96, Organism=Drosophila melanogaster, GI19920968, Length=439, Percent_Identity=41.6856492027335, Blast_Score=345, Evalue=8e-95,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002226 - InterPro: IPR020835 - InterPro: IPR010582 - InterPro: IPR018028 - InterPro: IPR011614 [H]
Pfam domain/function: PF00199 Catalase; PF06628 Catalase-rel [H]
EC number: =1.11.1.6 [H]
Molecular weight: Translated: 78967; Mature: 78835
Theoretical pI: Translated: 6.15; Mature: 6.15
Prosite motif: PS00437 CATALASE_1 ; PS00438 CATALASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASKNAPPVTETPKSEMAGTDTLDRGNTNEKLESLEQFRSDATQQALRTNHGVKISDNQN CCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCC TLKVGSRGPSLLEDFIMREKITHFDHERIPERIVHARGTAAHGYFQTYEDHGALSKAGFL EEEECCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHCCCHHHCCCC RDPGKKTPVFVRFSTVQGPRGSGDTVRDVRGFAVKLYTDEGNFDLVGNNMPVFFIQDAIK CCCCCCCCEEEEEEECCCCCCCCCCHHHCCCEEEEEEECCCCEEEECCCCCEEEECCHHC FPDFVHAVKPEPHNEIPTGGSAHDTFWDFVSLVPESAHMVLWTMSDRAIPKSLRTMQGFG CCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHCCC IHTFRFINTEGKSSFVKFHWKPKFGVCSLVWDEAQKLAGKDTDFHRRDLWESIEMGDYPE CEEEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCC WELGVQIVAEEDEHKFDFDLLDPTKIIPEELVPVTPLGKMVLNRNPDNYFAETEQVAFCP CCCCEEEEEECCCCCCCCCCCCCHHHCHHHCCCCCCHHHHHHCCCCCHHHCCCCEEEECC GHIVPGIDFSNDPLLQGRLFSYTDTQISRLGGPNFHEIPINRPIAPNHNGQRDAQHRTTI CCCCCCCCCCCCCCCCCEEEEECHHHHHHCCCCCCEECCCCCCCCCCCCCCCCHHHHHHH DKGRASYEPNSIDGGWPKETPAGPVDGGFETYPERVEAHKVRERSESFGDHFSQATLFFQ HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SMSHHEKEHIIAAYSFELGKVEREYIRARQVNEILANIDMDLAKRVAANLGLPAPAAGTV HHHHCCHHEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCC PARQTSVKESPALSQVNLLSGDIVSRKVAILVADGVDGKAVEAMKAALTAEGAHAKVLGP CCCHHCCCCCCCCCHHHHHCCCHHCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEECC TSAPVKTADGKSLPVDASAEGLPSVAFDAVFVPGGKASIEALKGDGVALHFILEAYKHLK CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEECCCCEEHHHHHHHHHHHH AISFAGEAKELLSLLRLEEDAGLLEVSDSTSFKPFFHAIAQHRVWDREAKAKAVPA HHHHCCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHCCCCCCC >Mature Secondary Structure ASKNAPPVTETPKSEMAGTDTLDRGNTNEKLESLEQFRSDATQQALRTNHGVKISDNQN CCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCC TLKVGSRGPSLLEDFIMREKITHFDHERIPERIVHARGTAAHGYFQTYEDHGALSKAGFL EEEECCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHCCCHHHCCCC RDPGKKTPVFVRFSTVQGPRGSGDTVRDVRGFAVKLYTDEGNFDLVGNNMPVFFIQDAIK CCCCCCCCEEEEEEECCCCCCCCCCHHHCCCEEEEEEECCCCEEEECCCCCEEEECCHHC FPDFVHAVKPEPHNEIPTGGSAHDTFWDFVSLVPESAHMVLWTMSDRAIPKSLRTMQGFG CCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHCCC IHTFRFINTEGKSSFVKFHWKPKFGVCSLVWDEAQKLAGKDTDFHRRDLWESIEMGDYPE CEEEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCC WELGVQIVAEEDEHKFDFDLLDPTKIIPEELVPVTPLGKMVLNRNPDNYFAETEQVAFCP CCCCEEEEEECCCCCCCCCCCCCHHHCHHHCCCCCCHHHHHHCCCCCHHHCCCCEEEECC GHIVPGIDFSNDPLLQGRLFSYTDTQISRLGGPNFHEIPINRPIAPNHNGQRDAQHRTTI CCCCCCCCCCCCCCCCCEEEEECHHHHHHCCCCCCEECCCCCCCCCCCCCCCCHHHHHHH DKGRASYEPNSIDGGWPKETPAGPVDGGFETYPERVEAHKVRERSESFGDHFSQATLFFQ HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SMSHHEKEHIIAAYSFELGKVEREYIRARQVNEILANIDMDLAKRVAANLGLPAPAAGTV HHHHCCHHEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCC PARQTSVKESPALSQVNLLSGDIVSRKVAILVADGVDGKAVEAMKAALTAEGAHAKVLGP CCCHHCCCCCCCCCHHHHHCCCHHCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEECC TSAPVKTADGKSLPVDASAEGLPSVAFDAVFVPGGKASIEALKGDGVALHFILEAYKHLK CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEECCCCEEHHHHHHHHHHHH AISFAGEAKELLSLLRLEEDAGLLEVSDSTSFKPFFHAIAQHRVWDREAKAKAVPA HHHHCCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCCHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA