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The map label for this gene is algB [H]

Identifier: 66043533

GI number: 66043533

Start: 278848

End: 280194

Strand: Direct

Name: algB [H]

Synonym: Psyr_0263

Alternate gene names: 66043533

Gene position: 278848-280194 (Clockwise)

Preceding gene: 66043529

Following gene: 66043534

Centisome position: 4.58

GC content: 60.58

Gene sequence:

>1347_bases
ATGGAAGCAGCCACTGAGAATCAGGGCCGTATTCTGCTTGTGGACGACGAGTCCGCCATCCTCCGCACTTTCCGGTACTG
TCTGGAAGACGAAGGCTACAGTGTCGCCACTGCCAACAGCGCAGCCCAGGCCGACACGCTCATGCAGCGTCAAGTATTCG
ATCTGTGCTTTCTCGATTTGCGTCTGGGCGAAGACAACGGCCTGGACGTGCTGGCGCAGATGCGGATTCAGGCGCCGTGG
ATGCGTGTGGTGATCGTGACTGCCCATTCGGCGGTGGACACGGCTGTGGATGCCATTCAGGCTGGCGCAGCCGATTATCT
GGTCAAGCCGTGCAGTCCTGACCAGTTGCGTCTTGCGACGGCCAAGCAGCTTGAAGTCAGGCAACTGTCTGCACGTCTTG
AAGCACTGGAAGGCGAGGTTCGCAAGCCCAAGGATGGTCTGGATTCCCACAGCCCTTCGATGATGGCCATTCTGGAAACG
GCTCGTCAGGTTGCTGTAACCGATGCCAACATCCTGATTCTGGGTGAGTCGGGTACCGGTAAGGGCGAGCTGGCCAGGGC
GATTCATGGCTGGAGCAAGCGGGCCAAGAAGTCCTGCGTCACGATCAACTGCCCGTCGCTGACCGCAGAACTGATGGAAA
GCGAGCTGTTCGGCCACAGCCGCGGTGCCTTTACCGGTGCCAGTGAAAGCACGCTGGGTCGCGTCAATCAGGCCGATGGC
GGCACCCTGTTCCTCGACGAAATCGGTGACTTCCCGCTGACGCTGCAGCCCAAGCTGCTGCGCTTCATTCAGGACAAGGA
ATACGAGCGCGTCGGCGACCCGGTGACTCGACGTGCCGACGTGCGCATCCTGGCCGCCACCAACCTCAACCTTGAGGACA
TGGTGCGCAGCGGACGTTTCCGTGAGGATCTGCTGTACCGCCTGAACGTGATCACCCTGAATCTGCCCGCCCTGCGTGAG
CGCAGCGAAGACATTCTGACCCTGGCGGATCGCTTTCTGGCGCGCTTCGTCAAGGAGTACGCTCGTCCGGCTCGCGGCTT
CAGCGAGGAGGCCCGCGCGGCGCTGCTCAATTACCGCTGGCCGGGCAACATTCGTGAGCTGCGCAACGTGATCGAGCGTG
CCAGCATCATCTGTCCACAGGAACGCGTAGAGGTCAGTCATCTGGGCATGGCTGAGCAACCGACCAACAACGCACCGCGG
GTGGGGGCAGCCTTGAGTCTGGACGAGCTTGAAAAGGCACACATCGGGGCCGTACTGGCAACCAGTGAAACCCTTGATCA
GGCCGCCAAGACCCTGGGTATCGATGCTTCGACGCTTTACCGCAAACGAAAACAGTACAACCTATGA

Upstream 100 bases:

>100_bases
AAGCTACCATGCATGCCGAAGAATCAATCAGAATTGACCATGCAACTTGCCCGATGATTCCGAGACTAACTGAGACAATT
CATTAAGGAGCGTAGGAAAA

Downstream 100 bases:

>100_bases
AATACCTCAAATGAAGCTGGCCATGAAGTTGCGCACCCGCCTCTTTCTGAGCATTTCGGCGCTTATCACGGTCGCTTTGC
TTGGATTGCTGCTGGGGCTC

Product: helix-turn-helix, Fis-type

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 448; Mature: 448

Protein sequence:

>448_residues
MEAATENQGRILLVDDESAILRTFRYCLEDEGYSVATANSAAQADTLMQRQVFDLCFLDLRLGEDNGLDVLAQMRIQAPW
MRVVIVTAHSAVDTAVDAIQAGAADYLVKPCSPDQLRLATAKQLEVRQLSARLEALEGEVRKPKDGLDSHSPSMMAILET
ARQVAVTDANILILGESGTGKGELARAIHGWSKRAKKSCVTINCPSLTAELMESELFGHSRGAFTGASESTLGRVNQADG
GTLFLDEIGDFPLTLQPKLLRFIQDKEYERVGDPVTRRADVRILAATNLNLEDMVRSGRFREDLLYRLNVITLNLPALRE
RSEDILTLADRFLARFVKEYARPARGFSEEARAALLNYRWPGNIRELRNVIERASIICPQERVEVSHLGMAEQPTNNAPR
VGAALSLDELEKAHIGAVLATSETLDQAAKTLGIDASTLYRKRKQYNL

Sequences:

>Translated_448_residues
MEAATENQGRILLVDDESAILRTFRYCLEDEGYSVATANSAAQADTLMQRQVFDLCFLDLRLGEDNGLDVLAQMRIQAPW
MRVVIVTAHSAVDTAVDAIQAGAADYLVKPCSPDQLRLATAKQLEVRQLSARLEALEGEVRKPKDGLDSHSPSMMAILET
ARQVAVTDANILILGESGTGKGELARAIHGWSKRAKKSCVTINCPSLTAELMESELFGHSRGAFTGASESTLGRVNQADG
GTLFLDEIGDFPLTLQPKLLRFIQDKEYERVGDPVTRRADVRILAATNLNLEDMVRSGRFREDLLYRLNVITLNLPALRE
RSEDILTLADRFLARFVKEYARPARGFSEEARAALLNYRWPGNIRELRNVIERASIICPQERVEVSHLGMAEQPTNNAPR
VGAALSLDELEKAHIGAVLATSETLDQAAKTLGIDASTLYRKRKQYNL
>Mature_448_residues
MEAATENQGRILLVDDESAILRTFRYCLEDEGYSVATANSAAQADTLMQRQVFDLCFLDLRLGEDNGLDVLAQMRIQAPW
MRVVIVTAHSAVDTAVDAIQAGAADYLVKPCSPDQLRLATAKQLEVRQLSARLEALEGEVRKPKDGLDSHSPSMMAILET
ARQVAVTDANILILGESGTGKGELARAIHGWSKRAKKSCVTINCPSLTAELMESELFGHSRGAFTGASESTLGRVNQADG
GTLFLDEIGDFPLTLQPKLLRFIQDKEYERVGDPVTRRADVRILAATNLNLEDMVRSGRFREDLLYRLNVITLNLPALRE
RSEDILTLADRFLARFVKEYARPARGFSEEARAALLNYRWPGNIRELRNVIERASIICPQERVEVSHLGMAEQPTNNAPR
VGAALSLDELEKAHIGAVLATSETLDQAAKTLGIDASTLYRKRKQYNL

Specific function: Positive regulator of the alginate biosynthetic gene algD [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1790437, Length=446, Percent_Identity=42.152466367713, Blast_Score=317, Evalue=8e-88,
Organism=Escherichia coli, GI1788550, Length=459, Percent_Identity=39.8692810457516, Blast_Score=303, Evalue=2e-83,
Organism=Escherichia coli, GI1788905, Length=369, Percent_Identity=42.0054200542005, Blast_Score=276, Evalue=3e-75,
Organism=Escherichia coli, GI1790299, Length=472, Percent_Identity=36.228813559322, Blast_Score=266, Evalue=2e-72,
Organism=Escherichia coli, GI87082117, Length=227, Percent_Identity=51.9823788546256, Blast_Score=230, Evalue=1e-61,
Organism=Escherichia coli, GI1789087, Length=305, Percent_Identity=43.2786885245902, Blast_Score=229, Evalue=2e-61,
Organism=Escherichia coli, GI1789233, Length=304, Percent_Identity=43.0921052631579, Blast_Score=220, Evalue=1e-58,
Organism=Escherichia coli, GI87081872, Length=232, Percent_Identity=47.4137931034483, Blast_Score=211, Evalue=1e-55,
Organism=Escherichia coli, GI87082152, Length=264, Percent_Identity=44.6969696969697, Blast_Score=199, Evalue=2e-52,
Organism=Escherichia coli, GI1787583, Length=224, Percent_Identity=44.6428571428571, Blast_Score=194, Evalue=8e-51,
Organism=Escherichia coli, GI1786524, Length=319, Percent_Identity=39.4984326018809, Blast_Score=189, Evalue=4e-49,
Organism=Escherichia coli, GI1789828, Length=317, Percent_Identity=32.807570977918, Blast_Score=139, Evalue=4e-34,
Organism=Escherichia coli, GI87081858, Length=329, Percent_Identity=30.6990881458967, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI1789809, Length=107, Percent_Identity=32.7102803738318, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1790552, Length=108, Percent_Identity=30.5555555555556, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR011006
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR002078
- InterPro:   IPR001789 [H]

Pfam domain/function: PF02954 HTH_8; PF00072 Response_reg; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 49521; Mature: 49521

Theoretical pI: Translated: 5.42; Mature: 5.42

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEAATENQGRILLVDDESAILRTFRYCLEDEGYSVATANSAAQADTLMQRQVFDLCFLDL
CCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHE
RLGEDNGLDVLAQMRIQAPWMRVVIVTAHSAVDTAVDAIQAGAADYLVKPCSPDQLRLAT
EECCCCCHHHHHHHHHCCCEEEEEEEEECHHHHHHHHHHHCCCHHHEECCCCCCCEEHHH
AKQLEVRQLSARLEALEGEVRKPKDGLDSHSPSMMAILETARQVAVTDANILILGESGTG
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHEEECCEEEEEECCCCC
KGELARAIHGWSKRAKKSCVTINCPSLTAELMESELFGHSRGAFTGASESTLGRVNQADG
HHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCC
GTLFLDEIGDFPLTLQPKLLRFIQDKEYERVGDPVTRRADVRILAATNLNLEDMVRSGRF
CEEEEECCCCCCCEECHHHHHHHHCCHHHHHCCCCCCCCCEEEEEECCCCHHHHHHCCCH
REDLLYRLNVITLNLPALRERSEDILTLADRFLARFVKEYARPARGFSEEARAALLNYRW
HHHHHHEEEEEEEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCC
PGNIRELRNVIERASIICPQERVEVSHLGMAEQPTNNAPRVGAALSLDELEKAHIGAVLA
CCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCEEEE
TSETLDQAAKTLGIDASTLYRKRKQYNL
CHHHHHHHHHHHCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MEAATENQGRILLVDDESAILRTFRYCLEDEGYSVATANSAAQADTLMQRQVFDLCFLDL
CCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHE
RLGEDNGLDVLAQMRIQAPWMRVVIVTAHSAVDTAVDAIQAGAADYLVKPCSPDQLRLAT
EECCCCCHHHHHHHHHCCCEEEEEEEEECHHHHHHHHHHHCCCHHHEECCCCCCCEEHHH
AKQLEVRQLSARLEALEGEVRKPKDGLDSHSPSMMAILETARQVAVTDANILILGESGTG
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHEEECCEEEEEECCCCC
KGELARAIHGWSKRAKKSCVTINCPSLTAELMESELFGHSRGAFTGASESTLGRVNQADG
HHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCC
GTLFLDEIGDFPLTLQPKLLRFIQDKEYERVGDPVTRRADVRILAATNLNLEDMVRSGRF
CEEEEECCCCCCCEECHHHHHHHHCCHHHHHCCCCCCCCCEEEEEECCCCHHHHHHCCCH
REDLLYRLNVITLNLPALRERSEDILTLADRFLARFVKEYARPARGFSEEARAALLNYRW
HHHHHHEEEEEEEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCC
PGNIRELRNVIERASIICPQERVEVSHLGMAEQPTNNAPRVGAALSLDELEKAHIGAVLA
CCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCEEEE
TSETLDQAAKTLGIDASTLYRKRKQYNL
CHHHHHHHHHHHCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12534463 [H]