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The map label for this gene is ybaO [H]

Identifier: 66043521

GI number: 66043521

Start: 264077

End: 264547

Strand: Direct

Name: ybaO [H]

Synonym: Psyr_0251

Alternate gene names: 66043521

Gene position: 264077-264547 (Clockwise)

Preceding gene: 66043517

Following gene: 66043523

Centisome position: 4.33

GC content: 58.17

Gene sequence:

>471_bases
ATGCAAATCGAGCTGGACAGTTACGATCGCAGGATTCTGGCGCTGCTGCAGGAAGATGCTTCGCTTTCCAGTGCGCAGAT
TGCCGAGCAGGTCGGTCTGTCGCAATCACCCTGCTGGCGCCGCATCCAGCGGCTCAAGGATGAAGGGGTGATTCGCCGTC
AGGTGGCGTTGCTGGACCGCAAGAAAATCGGTCTGAACACGCAGATATTCGCCGAGGTGAAACTCAACGCCCACGGGCGC
TCCAACTTCACCGAGTTCACCGACGCGATTCGTGGCTTCCCGGAGGTGCTGGAGTGCTATGTGCTGACGGGATCGGTGGA
TTTTCTGCTGCGCATCGTGACCCCGGATATCGAGGCGTACGAGCGGTTCTTTTTCGAAAAACTGTCGCTGGTACCCGGTA
TTCAGGAAGTGAACTCGACAGTGGCCCTCTCCGAGATCAAATCCACGACCAGCCTGCCGCTGTTGCGCTGA

Upstream 100 bases:

>100_bases
AATCTTTGCATGCGTGAAAAGAAATTTCTGGTCCATCATTGGGTGGATTAGTCTTTATAAGACTTGTTAATGCGCTGCAG
GCTATTTCGGAAAATTAATT

Downstream 100 bases:

>100_bases
CGGGGCTGGTGCCCGGAGTTGCGCCCGCCTCGGTTGTGCCTCGTGCACCGAGGTGGCTGGTTTTGCTGCCGGTTCCCGGC
AGTTCGCGGACAAGTCCGCT

Product: regulatory proteins, AsnC/Lrp

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 156

Protein sequence:

>156_residues
MQIELDSYDRRILALLQEDASLSSAQIAEQVGLSQSPCWRRIQRLKDEGVIRRQVALLDRKKIGLNTQIFAEVKLNAHGR
SNFTEFTDAIRGFPEVLECYVLTGSVDFLLRIVTPDIEAYERFFFEKLSLVPGIQEVNSTVALSEIKSTTSLPLLR

Sequences:

>Translated_156_residues
MQIELDSYDRRILALLQEDASLSSAQIAEQVGLSQSPCWRRIQRLKDEGVIRRQVALLDRKKIGLNTQIFAEVKLNAHGR
SNFTEFTDAIRGFPEVLECYVLTGSVDFLLRIVTPDIEAYERFFFEKLSLVPGIQEVNSTVALSEIKSTTSLPLLR
>Mature_156_residues
MQIELDSYDRRILALLQEDASLSSAQIAEQVGLSQSPCWRRIQRLKDEGVIRRQVALLDRKKIGLNTQIFAEVKLNAHGR
SNFTEFTDAIRGFPEVLECYVLTGSVDFLLRIVTPDIEAYERFFFEKLSLVPGIQEVNSTVALSEIKSTTSLPLLR

Specific function: Unknown

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=150, Percent_Identity=40.6666666666667, Blast_Score=134, Evalue=4e-33,
Organism=Escherichia coli, GI1787116, Length=149, Percent_Identity=33.5570469798658, Blast_Score=108, Evalue=2e-25,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 17716; Mature: 17716

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIELDSYDRRILALLQEDASLSSAQIAEQVGLSQSPCWRRIQRLKDEGVIRRQVALLDR
CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHH
KKIGLNTQIFAEVKLNAHGRSNFTEFTDAIRGFPEVLECYVLTGSVDFLLRIVTPDIEAY
HHCCCCCEEEEEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCHHHH
ERFFFEKLSLVPGIQEVNSTVALSEIKSTTSLPLLR
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MQIELDSYDRRILALLQEDASLSSAQIAEQVGLSQSPCWRRIQRLKDEGVIRRQVALLDR
CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHH
KKIGLNTQIFAEVKLNAHGRSNFTEFTDAIRGFPEVLECYVLTGSVDFLLRIVTPDIEAY
HHCCCCCEEEEEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCHHHH
ERFFFEKLSLVPGIQEVNSTVALSEIKSTTSLPLLR
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]