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The map label for this gene is yjiR [H]

Identifier: 66043500

GI number: 66043500

Start: 244835

End: 246256

Strand: Reverse

Name: yjiR [H]

Synonym: Psyr_0230

Alternate gene names: 66043500

Gene position: 246256-244835 (Counterclockwise)

Preceding gene: 66043502

Following gene: 66043499

Centisome position: 4.04

GC content: 62.24

Gene sequence:

>1422_bases
ATGACGCTCTACGTCAACCTCGCCGAACTGCTCGGCTCGCGCATCGAAAACGGCTTCTACCGCCCCGGCGACCGCCTGCC
CTCGGTACGCGCGTTGAGCGTCGAGCATGGCGTCAGTCTTAGCACCGTGCAGCAAGCGTATCGGGTGCTGGAAGACCATG
GCCTGGCCGCGCCGAAACCCAAATCCGGCTACTTCGTCTCGGTCAGCCGAAAAGCCCCTGCGCTGCCAGCGGTCGGCAGG
CCTGTGCAGCGGCCTGTGGATATCTCTCAATGGGATCAGGTGCTGGACCTGATTCGCGTGGCGCCCCTTGAAGCCGTCAC
GCAACTGGGGCGCGGCATGCCGGATGTCACCAGCCCGACCCTGAAACCTTTGATGCGCGCGCTGAGTCAGTTGAGTCGCC
ATCAGGACATGCCGGGGCTGTATTACGACAACATCTACGGCGTGCGCAGGCTGCGCGAACAGATTGCCCGGCTGATGCTC
GACTCGGGCTGCAGCCTGACCGCCAATGACCTGATCGTCACCAATGGCTGTCATGAAGCGCTATCAGCCAGTGTCCGGGC
CATCTGCTCGCCGGGGGACATCGTGGCGGTGGACTCGCCAAGCTTCTTCGGCGCCATGCAGACGCTCAAGGGCGTGGGCA
TGAAAGCCATGGAAATCCCTACCGACCCGTTGACCGGCATCAGCCTCGAAGCGCTGGAACTGGCGCTGGAGCAATGGCCG
ATCAAGGTCATTCAGCTGACGCCCAACTGCAACAACCCGCTGGGTTATGTCATGCCCGAAGCGCGCAAGCGGGCGCTGCT
GACCCTGGCACAGCGCTTCGACGTGGCGATCATCGAAGATGATGTGTATGGCGACCTGGCCTACAACTACCCTCGCCCGC
GCACCATCAAATCCTTCGACGAAGACGGTCGCGTGCTGTTGTGCAGTTCGTTTTCCAAGACCTTGGCACCGGGGCTGCGA
ATCGGCTGGGTAGCGCCGGGCCGTTATCTGGAGCAGGTGCTGCACATGAAATACATCGGCACCGGCTCCACCGCCCCGCA
GCCACAATTGGCCATCGCCGATTTCATCGAAGGCGGCCATTACGAGCCCCACGTGCGACGCATGCGTAGCCAATACCAGC
GCAGTCGCGACCAGATGATCGACTGGGTGATGCGCTATTTCCCCGAGGGCACACGCGCCAGCCGGCCGCAAGGCGGTTTC
ATGCTGTGGGTGGAGCTGGCCGAAGGCTTCGACACCCTGCGCCTGAACCGCGCCTTGCTGGGCAAGGGTGTGCAGATTGC
GGTGGGCAGTATCTTTTCGGCATCGGGCAAGTATCGCAACTGCATGCGCATGAACTTCGCGACCAAACCCAGCCGCGAAA
TCGAAAGCGCGGTGCGTATCGTCGGCGAGACAATTGCGCTACTGAATGCGCAAACTGACTGA

Upstream 100 bases:

>100_bases
TTTTATATTTTCCATACAGATGATTCAAAAACGCCACTGAATGCTATATTTCCGGCCAATCTGTATTGCTTTACCGCATT
CGAATTCCTGAGAGTACGCC

Downstream 100 bases:

>100_bases
TGCGGGCAAATCTTTCCCGGTTTTGCGGGTCATATCGCCAAGTCGAGCCATGTCCAGACGCGGAAGATCAATTTGAATAA
CTCATGGGCCTTGCCCTTTT

Product: transcriptional regulator GntR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 473; Mature: 472

Protein sequence:

>473_residues
MTLYVNLAELLGSRIENGFYRPGDRLPSVRALSVEHGVSLSTVQQAYRVLEDHGLAAPKPKSGYFVSVSRKAPALPAVGR
PVQRPVDISQWDQVLDLIRVAPLEAVTQLGRGMPDVTSPTLKPLMRALSQLSRHQDMPGLYYDNIYGVRRLREQIARLML
DSGCSLTANDLIVTNGCHEALSASVRAICSPGDIVAVDSPSFFGAMQTLKGVGMKAMEIPTDPLTGISLEALELALEQWP
IKVIQLTPNCNNPLGYVMPEARKRALLTLAQRFDVAIIEDDVYGDLAYNYPRPRTIKSFDEDGRVLLCSSFSKTLAPGLR
IGWVAPGRYLEQVLHMKYIGTGSTAPQPQLAIADFIEGGHYEPHVRRMRSQYQRSRDQMIDWVMRYFPEGTRASRPQGGF
MLWVELAEGFDTLRLNRALLGKGVQIAVGSIFSASGKYRNCMRMNFATKPSREIESAVRIVGETIALLNAQTD

Sequences:

>Translated_473_residues
MTLYVNLAELLGSRIENGFYRPGDRLPSVRALSVEHGVSLSTVQQAYRVLEDHGLAAPKPKSGYFVSVSRKAPALPAVGR
PVQRPVDISQWDQVLDLIRVAPLEAVTQLGRGMPDVTSPTLKPLMRALSQLSRHQDMPGLYYDNIYGVRRLREQIARLML
DSGCSLTANDLIVTNGCHEALSASVRAICSPGDIVAVDSPSFFGAMQTLKGVGMKAMEIPTDPLTGISLEALELALEQWP
IKVIQLTPNCNNPLGYVMPEARKRALLTLAQRFDVAIIEDDVYGDLAYNYPRPRTIKSFDEDGRVLLCSSFSKTLAPGLR
IGWVAPGRYLEQVLHMKYIGTGSTAPQPQLAIADFIEGGHYEPHVRRMRSQYQRSRDQMIDWVMRYFPEGTRASRPQGGF
MLWVELAEGFDTLRLNRALLGKGVQIAVGSIFSASGKYRNCMRMNFATKPSREIESAVRIVGETIALLNAQTD
>Mature_472_residues
TLYVNLAELLGSRIENGFYRPGDRLPSVRALSVEHGVSLSTVQQAYRVLEDHGLAAPKPKSGYFVSVSRKAPALPAVGRP
VQRPVDISQWDQVLDLIRVAPLEAVTQLGRGMPDVTSPTLKPLMRALSQLSRHQDMPGLYYDNIYGVRRLREQIARLMLD
SGCSLTANDLIVTNGCHEALSASVRAICSPGDIVAVDSPSFFGAMQTLKGVGMKAMEIPTDPLTGISLEALELALEQWPI
KVIQLTPNCNNPLGYVMPEARKRALLTLAQRFDVAIIEDDVYGDLAYNYPRPRTIKSFDEDGRVLLCSSFSKTLAPGLRI
GWVAPGRYLEQVLHMKYIGTGSTAPQPQLAIADFIEGGHYEPHVRRMRSQYQRSRDQMIDWVMRYFPEGTRASRPQGGFM
LWVELAEGFDTLRLNRALLGKGVQIAVGSIFSASGKYRNCMRMNFATKPSREIESAVRIVGETIALLNAQTD

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=317, Percent_Identity=28.391167192429, Blast_Score=123, Evalue=4e-28,
Organism=Homo sapiens, GI33469970, Length=317, Percent_Identity=28.391167192429, Blast_Score=123, Evalue=4e-28,
Organism=Homo sapiens, GI4507369, Length=236, Percent_Identity=25.4237288135593, Blast_Score=76, Evalue=6e-14,
Organism=Escherichia coli, GI1790797, Length=465, Percent_Identity=57.2043010752688, Blast_Score=565, Evalue=1e-162,
Organism=Escherichia coli, GI1787710, Length=466, Percent_Identity=34.9785407725322, Blast_Score=298, Evalue=5e-82,
Organism=Caenorhabditis elegans, GI17567663, Length=360, Percent_Identity=23.3333333333333, Blast_Score=73, Evalue=4e-13,
Organism=Saccharomyces cerevisiae, GI6321236, Length=317, Percent_Identity=26.1829652996845, Blast_Score=96, Evalue=1e-20,
Organism=Saccharomyces cerevisiae, GI6321929, Length=422, Percent_Identity=23.9336492890995, Blast_Score=85, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6321000, Length=243, Percent_Identity=24.2798353909465, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI21356535, Length=346, Percent_Identity=24.2774566473988, Blast_Score=83, Evalue=4e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 52379; Mature: 52248

Theoretical pI: Translated: 8.88; Mature: 8.88

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLYVNLAELLGSRIENGFYRPGDRLPSVRALSVEHGVSLSTVQQAYRVLEDHGLAAPKP
CEEEEEHHHHHHHHHHCCCCCCCCCCCCEEEEEHHCCCCHHHHHHHHHHHHHCCCCCCCC
KSGYFVSVSRKAPALPAVGRPVQRPVDISQWDQVLDLIRVAPLEAVTQLGRGMPDVTSPT
CCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCHH
LKPLMRALSQLSRHQDMPGLYYDNIYGVRRLREQIARLMLDSGCSLTANDLIVTNGCHEA
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCEEEECCHHHH
LSASVRAICSPGDIVAVDSPSFFGAMQTLKGVGMKAMEIPTDPLTGISLEALELALEQWP
HHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHCC
IKVIQLTPNCNNPLGYVMPEARKRALLTLAQRFDVAIIEDDVYGDLAYNYPRPRTIKSFD
EEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCHHCCCCCCCCCCCCC
EDGRVLLCSSFSKTLAPGLRIGWVAPGRYLEQVLHMKYIGTGSTAPQPQLAIADFIEGGH
CCCCEEEECCCHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCC
YEPHVRRMRSQYQRSRDQMIDWVMRYFPEGTRASRPQGGFMLWVELAEGFDTLRLNRALL
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEHHCCHHHHHHHHHHH
GKGVQIAVGSIFSASGKYRNCMRMNFATKPSREIESAVRIVGETIALLNAQTD
CCCCEEEEHHHHHCCCCCCHHHEECCCCCCHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TLYVNLAELLGSRIENGFYRPGDRLPSVRALSVEHGVSLSTVQQAYRVLEDHGLAAPKP
EEEEEHHHHHHHHHHCCCCCCCCCCCCEEEEEHHCCCCHHHHHHHHHHHHHCCCCCCCC
KSGYFVSVSRKAPALPAVGRPVQRPVDISQWDQVLDLIRVAPLEAVTQLGRGMPDVTSPT
CCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCHH
LKPLMRALSQLSRHQDMPGLYYDNIYGVRRLREQIARLMLDSGCSLTANDLIVTNGCHEA
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCEEEECCHHHH
LSASVRAICSPGDIVAVDSPSFFGAMQTLKGVGMKAMEIPTDPLTGISLEALELALEQWP
HHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHCC
IKVIQLTPNCNNPLGYVMPEARKRALLTLAQRFDVAIIEDDVYGDLAYNYPRPRTIKSFD
EEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCHHCCCCCCCCCCCCC
EDGRVLLCSSFSKTLAPGLRIGWVAPGRYLEQVLHMKYIGTGSTAPQPQLAIADFIEGGH
CCCCEEEECCCHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCC
YEPHVRRMRSQYQRSRDQMIDWVMRYFPEGTRASRPQGGFMLWVELAEGFDTLRLNRALL
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEHHCCHHHHHHHHHHH
GKGVQIAVGSIFSASGKYRNCMRMNFATKPSREIESAVRIVGETIALLNAQTD
CCCCEEEEHHHHHCCCCCCHHHEECCCCCCHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]