Click here to switch to the map view.

The map label for this gene is algE3 [H]

Identifier: 66043394

GI number: 66043394

Start: 133779

End: 135326

Strand: Direct

Name: algE3 [H]

Synonym: Psyr_0124

Alternate gene names: 66043394

Gene position: 133779-135326 (Clockwise)

Preceding gene: 66043393

Following gene: 66043395

Centisome position: 2.2

GC content: 61.43

Gene sequence:

>1548_bases
ATGACCCAGACAGTCGACATCAAGGACGTCACCAATCCCACGGCGCTTGCGAACTTGCAAGTCGCGAGGGCCACTAGCCA
GGTCAGTAACAACCCGATCGAACTCATCGTGCAGGGCACTCCTGGCAACGACTCCCTACGCGGTGGGCTGGCCAATGAAC
TGCTGATGGGTGGGGACGGTAACGACTATATAGTCAGCGGGGGTGGCAACGATGTGATGGTCCCCGGTGCCGGAGCCGAC
TCCTTGAGCGGCGGCGCCGGCAACGATGTATTCCGCTTCGAGCGCATCAGCGACAGCTATATCAATGGCGCAGGTGAGTC
CACCGATTCCATCAGCTATTTTGACCCCGCCCACGATATTCTCGACGTGTCGGCCCTGGGCTATAGCCATTTAGGCAACG
GCTATGGCGATACCCTGCACATTCGTAGCGAGCCTTTGCGCGGTATTTACTTTCTGGAAAGCTACGAGCGGGACCAGAAC
GGCCATCGTTTTGCCGTGCAGTTTCTGGCCAACAGCGGCGTTATTACCGATGCCAACCTGCAACCGCTGATCAACGGTAC
CTCGCAGAGCAACCTGCTGGTGGGCACCGACGGCAGCGAAACGCTCAAGGCCGGCGCTGGCCGCGACACCGTCGAAGCGG
GTGCGGACAATGACCGGCTATTCGGCGGCGCCGGCGGCGACACTCTGAGCGGCGGCGCGGGTGCCGACACCTTCGTGTAT
ACCCGGCTCAGCGACAGCTACCGCAACGATGCCAGTGGCAGCTACAGCAGCCGCGACCTGATCACCGACTTCAGTGGCAA
CGGCCATGACATGATCGACGTGTCCGCGTTGGGCTTCACCGGGCTGGGTAACGGCTACAACGGTACGCTGAAGGCGGTTC
TCAACCTCGCCGGCGATGCTACCGCGCTTAAATCATTAGAGGCCGATGCCAACGGTAACCGCTTCGAAATTCTGCTCAGT
GGCAACCATGTCAATGAGCTCAACGCCAGCACTGTGCTGTTCGCCCCGCCCAGTGATGCGACGGTTGTGACCAGCCCGCA
GCCGATCACCCCGGTGAATCTGGCAGGCGGTGATAAGTCCGAAAAGCTTTATGGTTACTGGGGCAACGATACCCTGGCCG
GTGGCGCCGGAAACGACATCCTCGAGGGCAACGCCGGTGACGACGTGCTGACCGGTGGGTTGGGCGCGGACAAGCTCACC
GGCGGCACAGGCAACGACCGTTTCGTGTTCACTAGCAGCGCCGACAGCCATGCCGGCAGCAGCGACCTGATCACTGATTT
CATCTGGGGCCAGGACAAGCTCGACGTCGCTGCGCTCGGCGTGACCGGTTTTGGCAACGGCCGCGACGGCACCTTGAGCA
TGACCTACGATGAAAACACTGACCGTACCTACCTGCGCAGTCGCGAGCCAGGCGCCGATGGGCATGCTTTCCAGGTCACG
CTAGTAGGGTTCGACTACACGCGAGAGCTCACCAACGCCGACCTGGTGGTTGCCGATACGGCAGACGTGGCGCTGGTTGG
TCAAACCGCCGTCGACCTCGCGAGCTGA

Upstream 100 bases:

>100_bases
ATAACCCCTTCGTCGGATAAGGCCCACTGCTATCAACGAGACGGCATTACTGGCGTCACACCACACTCTCGGTGGACCAA
CAGCAGGTAAGGAGCACGGC

Downstream 100 bases:

>100_bases
CATCACTTGAACAGCTCGCCCCACCTTTACTTGCCTGCTTTCGTGTCAGACACGAAAGCCCACTGAAACTTGGAACAGGC
GCTCCCATTTCGGCTGATGC

Product: hemolysin-type calcium-binding region

Products: NA

Alternate protein names: Mannuronan epimerase 3 [H]

Number of amino acids: Translated: 515; Mature: 514

Protein sequence:

>515_residues
MTQTVDIKDVTNPTALANLQVARATSQVSNNPIELIVQGTPGNDSLRGGLANELLMGGDGNDYIVSGGGNDVMVPGAGAD
SLSGGAGNDVFRFERISDSYINGAGESTDSISYFDPAHDILDVSALGYSHLGNGYGDTLHIRSEPLRGIYFLESYERDQN
GHRFAVQFLANSGVITDANLQPLINGTSQSNLLVGTDGSETLKAGAGRDTVEAGADNDRLFGGAGGDTLSGGAGADTFVY
TRLSDSYRNDASGSYSSRDLITDFSGNGHDMIDVSALGFTGLGNGYNGTLKAVLNLAGDATALKSLEADANGNRFEILLS
GNHVNELNASTVLFAPPSDATVVTSPQPITPVNLAGGDKSEKLYGYWGNDTLAGGAGNDILEGNAGDDVLTGGLGADKLT
GGTGNDRFVFTSSADSHAGSSDLITDFIWGQDKLDVAALGVTGFGNGRDGTLSMTYDENTDRTYLRSREPGADGHAFQVT
LVGFDYTRELTNADLVVADTADVALVGQTAVDLAS

Sequences:

>Translated_515_residues
MTQTVDIKDVTNPTALANLQVARATSQVSNNPIELIVQGTPGNDSLRGGLANELLMGGDGNDYIVSGGGNDVMVPGAGAD
SLSGGAGNDVFRFERISDSYINGAGESTDSISYFDPAHDILDVSALGYSHLGNGYGDTLHIRSEPLRGIYFLESYERDQN
GHRFAVQFLANSGVITDANLQPLINGTSQSNLLVGTDGSETLKAGAGRDTVEAGADNDRLFGGAGGDTLSGGAGADTFVY
TRLSDSYRNDASGSYSSRDLITDFSGNGHDMIDVSALGFTGLGNGYNGTLKAVLNLAGDATALKSLEADANGNRFEILLS
GNHVNELNASTVLFAPPSDATVVTSPQPITPVNLAGGDKSEKLYGYWGNDTLAGGAGNDILEGNAGDDVLTGGLGADKLT
GGTGNDRFVFTSSADSHAGSSDLITDFIWGQDKLDVAALGVTGFGNGRDGTLSMTYDENTDRTYLRSREPGADGHAFQVT
LVGFDYTRELTNADLVVADTADVALVGQTAVDLAS
>Mature_514_residues
TQTVDIKDVTNPTALANLQVARATSQVSNNPIELIVQGTPGNDSLRGGLANELLMGGDGNDYIVSGGGNDVMVPGAGADS
LSGGAGNDVFRFERISDSYINGAGESTDSISYFDPAHDILDVSALGYSHLGNGYGDTLHIRSEPLRGIYFLESYERDQNG
HRFAVQFLANSGVITDANLQPLINGTSQSNLLVGTDGSETLKAGAGRDTVEAGADNDRLFGGAGGDTLSGGAGADTFVYT
RLSDSYRNDASGSYSSRDLITDFSGNGHDMIDVSALGFTGLGNGYNGTLKAVLNLAGDATALKSLEADANGNRFEILLSG
NHVNELNASTVLFAPPSDATVVTSPQPITPVNLAGGDKSEKLYGYWGNDTLAGGAGNDILEGNAGDDVLTGGLGADKLTG
GTGNDRFVFTSSADSHAGSSDLITDFIWGQDKLDVAALGVTGFGNGRDGTLSMTYDENTDRTYLRSREPGADGHAFQVTL
VGFDYTRELTNADLVVADTADVALVGQTAVDLAS

Specific function: Converts beta-D-mannuronic acid (M) to alpha-L-guluronic acid (G), producing a polymer with gel-forming capacity, required for the formation of the cyst coat [H]

COG id: COG2931

COG function: function code Q; RTX toxins and related Ca2+-binding proteins

Gene ontology:

Cell location: Secreted, extracellular space. Note=Probably exported via the hemolysin-type secretion pathway [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 16 PbH1 repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006633
- InterPro:   IPR018511
- InterPro:   IPR001343
- InterPro:   IPR022441
- InterPro:   IPR006626
- InterPro:   IPR012334
- InterPro:   IPR011050
- InterPro:   IPR011049 [H]

Pfam domain/function: PF00353 HemolysinCabind [H]

EC number: NA

Molecular weight: Translated: 53238; Mature: 53107

Theoretical pI: Translated: 3.99; Mature: 3.99

Prosite motif: PS00107 PROTEIN_KINASE_ATP ; PS00330 HEMOLYSIN_CALCIUM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQTVDIKDVTNPTALANLQVARATSQVSNNPIELIVQGTPGNDSLRGGLANELLMGGDG
CCCEEEECCCCCCCHHEEEEEEHHHHHHCCCCEEEEEECCCCCCHHCCCCCHHEEECCCC
NDYIVSGGGNDVMVPGAGADSLSGGAGNDVFRFERISDSYINGAGESTDSISYFDPAHDI
CEEEEECCCCEEEECCCCCCCCCCCCCCCCEEEEECCHHHHCCCCCCCCCEEECCCHHHH
LDVSALGYSHLGNGYGDTLHIRSEPLRGIYFLESYERDQNGHRFAVQFLANSGVITDANL
HHHHHHCHHHCCCCCCCEEEEECCCCCEEEEEEHHCCCCCCCEEEEEEEECCCEEECCCC
QPLINGTSQSNLLVGTDGSETLKAGAGRDTVEAGADNDRLFGGAGGDTLSGGAGADTFVY
CEEECCCCCCCEEEECCCCHHHHCCCCCCHHCCCCCCCEEEECCCCCCCCCCCCCCEEEE
TRLSDSYRNDASGSYSSRDLITDFSGNGHDMIDVSALGFTGLGNGYNGTLKAVLNLAGDA
EECCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEECEECCCCCCCHHHHHHHHHCCCH
TALKSLEADANGNRFEILLSGNHVNELNASTVLFAPPSDATVVTSPQPITPVNLAGGDKS
HHHHHCCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCEEEECCCCCCEEEECCCCCC
EKLYGYWGNDTLAGGAGNDILEGNAGDDVLTGGLGADKLTGGTGNDRFVFTSSADSHAGS
CEEEEECCCCEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCEEEEECCCCCCCCC
SDLITDFIWGQDKLDVAALGVTGFGNGRDGTLSMTYDENTDRTYLRSREPGADGHAFQVT
CHHHHHHHCCCCCCEEEEEEEEECCCCCCCEEEEEECCCCCCEEEECCCCCCCCCEEEEE
LVGFDYTRELTNADLVVADTADVALVGQTAVDLAS
EEECCHHHHCCCCCEEEECCCCEEEECCHHHCCCC
>Mature Secondary Structure 
TQTVDIKDVTNPTALANLQVARATSQVSNNPIELIVQGTPGNDSLRGGLANELLMGGDG
CCEEEECCCCCCCHHEEEEEEHHHHHHCCCCEEEEEECCCCCCHHCCCCCHHEEECCCC
NDYIVSGGGNDVMVPGAGADSLSGGAGNDVFRFERISDSYINGAGESTDSISYFDPAHDI
CEEEEECCCCEEEECCCCCCCCCCCCCCCCEEEEECCHHHHCCCCCCCCCEEECCCHHHH
LDVSALGYSHLGNGYGDTLHIRSEPLRGIYFLESYERDQNGHRFAVQFLANSGVITDANL
HHHHHHCHHHCCCCCCCEEEEECCCCCEEEEEEHHCCCCCCCEEEEEEEECCCEEECCCC
QPLINGTSQSNLLVGTDGSETLKAGAGRDTVEAGADNDRLFGGAGGDTLSGGAGADTFVY
CEEECCCCCCCEEEECCCCHHHHCCCCCCHHCCCCCCCEEEECCCCCCCCCCCCCCEEEE
TRLSDSYRNDASGSYSSRDLITDFSGNGHDMIDVSALGFTGLGNGYNGTLKAVLNLAGDA
EECCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEECEECCCCCCCHHHHHHHHHCCCH
TALKSLEADANGNRFEILLSGNHVNELNASTVLFAPPSDATVVTSPQPITPVNLAGGDKS
HHHHHCCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCEEEECCCCCCEEEECCCCCC
EKLYGYWGNDTLAGGAGNDILEGNAGDDVLTGGLGADKLTGGTGNDRFVFTSSADSHAGS
CEEEEECCCCEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCEEEEECCCCCCCCC
SDLITDFIWGQDKLDVAALGVTGFGNGRDGTLSMTYDENTDRTYLRSREPGADGHAFQVT
CHHHHHHHCCCCCCEEEEEEEEECCCCCCCEEEEEECCCCCCEEEECCCCCCCCCEEEEE
LVGFDYTRELTNADLVVADTADVALVGQTAVDLAS
EEECCHHHHCCCCCEEEECCCCEEEECCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7476166; 10937941 [H]