| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
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The map label for this gene is ucpA [C]
Identifier: 66043393
GI number: 66043393
Start: 132718
End: 133539
Strand: Direct
Name: ucpA [C]
Synonym: Psyr_0123
Alternate gene names: 66043393
Gene position: 132718-133539 (Clockwise)
Preceding gene: 66043392
Following gene: 66043394
Centisome position: 2.18
GC content: 55.84
Gene sequence:
>822_bases ATGGACAATAAACTGACATCCAGGATCGCGATCATTACAGGTGCGGCTCAAGGGATCGGCGCCGCGATTGCGCGACGGTT TTTACAGGAAGGCTGCTTTGTTTACGTCACTGATATAAACGACGTACTCGGAAGAGAGACAGCAAGAGCATTGGGAGATC GTGCCTGTTATCTGCATCTTGATGTGCGCTGCGAAGAAGATTGGCAGCGAGTGACAGCGCATGTCGTAAAAGCGCACGGC CGCCTCGATGTACTGGTCAACAACGCGGGCATTACCGGGTTTGAGCAGGGCGCTGTCCAGCACGACCCAGAGCATGCGCG TCTGGAGGACTGGCAAGCCGTACATCACACCAATCTCGATGGTGTGTTTCTCGGGTGCAAGTACGCTATACGAGCCATGC GCCATACGGAAACGGGTTCCATTATCAACATCTCCTCTCGCTCCGGGCTGGTCGGTATTCCTGGCGCTGCTGCGTACGCG TCGTCCAAGGCCGCCGTTCGCAATCACACCAAGACGGTGGCGCTTTACTGCGCCGAGCAAGGATTGAAAGTTCGATGCAA CTCGATCCATCCGGCCGCCATCCTCACCCCTATATGGGAGCCCATGTTGGGTGCTGATGCAGGTCGTGAAGAGCGAATGG CTGCACTTGTTCGAGACACTCCACTCAGAAGATTTGGTATGCCTGAAGAAGTGGCGGCTGTGGCCCTGTTATTGGCCACC GATGAGGCTACGTACATTACCGGCAGCGAGTTCAACATTGATGGAGGTCTGTTGGCGGGTTCGGCAGCGACGCCAGTGGT ATTGGATGACAGCGAAACCTGA
Upstream 100 bases:
>100_bases CCGGCTACCCAATCAGATGCGTTTGAAGGCGATGGCACTGCATAGGACATAGACTCTCTCTAAAAGCTGTTGCACACGCC TTACGACGGAGGCTTCATTT
Downstream 100 bases:
>100_bases AAACTGCCCGCACGAATAGCTGCAATGGGTCGAAAGCTGTCTTTGGTGACGGGCAGCTCTAGACCCAAGATAGCCCTCCG CTTGGAGCCGCTAAGGCTAA
Product: Short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 273; Mature: 273
Protein sequence:
>273_residues MDNKLTSRIAIITGAAQGIGAAIARRFLQEGCFVYVTDINDVLGRETARALGDRACYLHLDVRCEEDWQRVTAHVVKAHG RLDVLVNNAGITGFEQGAVQHDPEHARLEDWQAVHHTNLDGVFLGCKYAIRAMRHTETGSIINISSRSGLVGIPGAAAYA SSKAAVRNHTKTVALYCAEQGLKVRCNSIHPAAILTPIWEPMLGADAGREERMAALVRDTPLRRFGMPEEVAAVALLLAT DEATYITGSEFNIDGGLLAGSAATPVVLDDSET
Sequences:
>Translated_273_residues MDNKLTSRIAIITGAAQGIGAAIARRFLQEGCFVYVTDINDVLGRETARALGDRACYLHLDVRCEEDWQRVTAHVVKAHG RLDVLVNNAGITGFEQGAVQHDPEHARLEDWQAVHHTNLDGVFLGCKYAIRAMRHTETGSIINISSRSGLVGIPGAAAYA SSKAAVRNHTKTVALYCAEQGLKVRCNSIHPAAILTPIWEPMLGADAGREERMAALVRDTPLRRFGMPEEVAAVALLLAT DEATYITGSEFNIDGGLLAGSAATPVVLDDSET >Mature_273_residues MDNKLTSRIAIITGAAQGIGAAIARRFLQEGCFVYVTDINDVLGRETARALGDRACYLHLDVRCEEDWQRVTAHVVKAHG RLDVLVNNAGITGFEQGAVQHDPEHARLEDWQAVHHTNLDGVFLGCKYAIRAMRHTETGSIINISSRSGLVGIPGAAAYA SSKAAVRNHTKTVALYCAEQGLKVRCNSIHPAAILTPIWEPMLGADAGREERMAALVRDTPLRRFGMPEEVAAVALLLAT DEATYITGSEFNIDGGLLAGSAATPVVLDDSET
Specific function: Unknown
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=259, Percent_Identity=31.2741312741313, Blast_Score=112, Evalue=4e-25, Organism=Homo sapiens, GI15277342, Length=270, Percent_Identity=33.3333333333333, Blast_Score=110, Evalue=1e-24, Organism=Homo sapiens, GI59889578, Length=253, Percent_Identity=33.596837944664, Blast_Score=109, Evalue=2e-24, Organism=Homo sapiens, GI19923817, Length=260, Percent_Identity=29.2307692307692, Blast_Score=109, Evalue=3e-24, Organism=Homo sapiens, GI40254992, Length=251, Percent_Identity=33.0677290836653, Blast_Score=102, Evalue=4e-22, Organism=Homo sapiens, GI66933014, Length=254, Percent_Identity=32.6771653543307, Blast_Score=99, Evalue=6e-21, Organism=Homo sapiens, GI126723750, Length=259, Percent_Identity=27.4131274131274, Blast_Score=95, Evalue=7e-20, Organism=Homo sapiens, GI4758504, Length=256, Percent_Identity=30.078125, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI31542939, Length=223, Percent_Identity=29.5964125560538, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI10190704, Length=257, Percent_Identity=29.5719844357977, Blast_Score=82, Evalue=5e-16, Organism=Homo sapiens, GI83715985, Length=256, Percent_Identity=29.296875, Blast_Score=82, Evalue=7e-16, Organism=Homo sapiens, GI4504505, Length=204, Percent_Identity=30.8823529411765, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI224922801, Length=179, Percent_Identity=30.1675977653631, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI126723191, Length=189, Percent_Identity=29.1005291005291, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI5031737, Length=256, Percent_Identity=24.609375, Blast_Score=66, Evalue=3e-11, Organism=Escherichia coli, GI87082100, Length=267, Percent_Identity=34.0823970037453, Blast_Score=115, Evalue=2e-27, Organism=Escherichia coli, GI1787335, Length=252, Percent_Identity=32.5396825396825, Blast_Score=114, Evalue=6e-27, Organism=Escherichia coli, GI1788459, Length=258, Percent_Identity=32.5581395348837, Blast_Score=105, Evalue=2e-24, Organism=Escherichia coli, GI2367175, Length=256, Percent_Identity=33.59375, Blast_Score=105, Evalue=5e-24, Organism=Escherichia coli, GI1790717, Length=257, Percent_Identity=29.9610894941634, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1786812, Length=257, Percent_Identity=30.3501945525292, Blast_Score=91, Evalue=6e-20, Organism=Escherichia coli, GI1789208, Length=260, Percent_Identity=30, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI1787905, Length=259, Percent_Identity=29.7297297297297, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI1789378, Length=262, Percent_Identity=29.0076335877863, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI87082160, Length=257, Percent_Identity=26.8482490272374, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1787820, Length=187, Percent_Identity=32.0855614973262, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI2367365, Length=262, Percent_Identity=29.7709923664122, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1789057, Length=262, Percent_Identity=27.8625954198473, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1787526, Length=262, Percent_Identity=24.8091603053435, Blast_Score=70, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17555706, Length=257, Percent_Identity=32.6848249027237, Blast_Score=115, Evalue=2e-26, Organism=Caenorhabditis elegans, GI25147288, Length=264, Percent_Identity=32.9545454545455, Blast_Score=107, Evalue=5e-24, Organism=Caenorhabditis elegans, GI17561402, Length=261, Percent_Identity=27.5862068965517, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17559104, Length=274, Percent_Identity=29.1970802919708, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI193204405, Length=279, Percent_Identity=29.0322580645161, Blast_Score=87, Evalue=7e-18, Organism=Caenorhabditis elegans, GI17560676, Length=258, Percent_Identity=26.3565891472868, Blast_Score=87, Evalue=9e-18, Organism=Caenorhabditis elegans, GI17562906, Length=267, Percent_Identity=28.4644194756554, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17551412, Length=276, Percent_Identity=27.1739130434783, Blast_Score=85, Evalue=5e-17, Organism=Caenorhabditis elegans, GI17562904, Length=291, Percent_Identity=29.553264604811, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17562908, Length=270, Percent_Identity=28.1481481481481, Blast_Score=82, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17538182, Length=257, Percent_Identity=28.7937743190661, Blast_Score=80, Evalue=9e-16, Organism=Caenorhabditis elegans, GI71994600, Length=259, Percent_Identity=28.5714285714286, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17531453, Length=267, Percent_Identity=28.8389513108614, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17538480, Length=285, Percent_Identity=26.6666666666667, Blast_Score=77, Evalue=7e-15, Organism=Caenorhabditis elegans, GI17560220, Length=266, Percent_Identity=28.9473684210526, Blast_Score=77, Evalue=8e-15, Organism=Caenorhabditis elegans, GI115534694, Length=263, Percent_Identity=27.3764258555133, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI71994604, Length=259, Percent_Identity=27.7992277992278, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI17560150, Length=265, Percent_Identity=26.7924528301887, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI72000259, Length=270, Percent_Identity=26.2962962962963, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI17560332, Length=270, Percent_Identity=28.8888888888889, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI17563726, Length=265, Percent_Identity=26.0377358490566, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17538486, Length=272, Percent_Identity=26.4705882352941, Blast_Score=70, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17564282, Length=229, Percent_Identity=26.6375545851528, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17562910, Length=265, Percent_Identity=26.7924528301887, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17508651, Length=256, Percent_Identity=27.34375, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17568967, Length=230, Percent_Identity=25.2173913043478, Blast_Score=65, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=265, Percent_Identity=27.9245283018868, Blast_Score=72, Evalue=9e-14, Organism=Saccharomyces cerevisiae, GI6322227, Length=193, Percent_Identity=25.3886010362694, Blast_Score=62, Evalue=9e-11, Organism=Drosophila melanogaster, GI23397609, Length=253, Percent_Identity=35.9683794466403, Blast_Score=127, Evalue=9e-30, Organism=Drosophila melanogaster, GI21357041, Length=254, Percent_Identity=34.6456692913386, Blast_Score=116, Evalue=2e-26, Organism=Drosophila melanogaster, GI28571526, Length=262, Percent_Identity=33.969465648855, Blast_Score=115, Evalue=3e-26, Organism=Drosophila melanogaster, GI24639444, Length=257, Percent_Identity=32.6848249027237, Blast_Score=115, Evalue=3e-26, Organism=Drosophila melanogaster, GI24644339, Length=254, Percent_Identity=33.4645669291339, Blast_Score=115, Evalue=3e-26, Organism=Drosophila melanogaster, GI17737361, Length=257, Percent_Identity=31.5175097276265, Blast_Score=100, Evalue=1e-21, Organism=Drosophila melanogaster, GI21355319, Length=261, Percent_Identity=26.8199233716475, Blast_Score=97, Evalue=1e-20, Organism=Drosophila melanogaster, GI24644337, Length=180, Percent_Identity=33.8888888888889, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI18859837, Length=199, Percent_Identity=31.1557788944724, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24649181, Length=171, Percent_Identity=29.2397660818713, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI24643142, Length=257, Percent_Identity=26.4591439688716, Blast_Score=74, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.51 [H]
Molecular weight: Translated: 29356; Mature: 29356
Theoretical pI: Translated: 6.17; Mature: 6.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDNKLTSRIAIITGAAQGIGAAIARRFLQEGCFVYVTDINDVLGRETARALGDRACYLHL CCCCHHCEEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCCCEEEEEE DVRCEEDWQRVTAHVVKAHGRLDVLVNNAGITGFEQGAVQHDPEHARLEDWQAVHHTNLD EEEECHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC GVFLGCKYAIRAMRHTETGSIINISSRSGLVGIPGAAAYASSKAAVRNHTKTVALYCAEQ EEEEHHHHHHHHHHCCCCCCEEEECCCCCEEECCCHHHHHCCHHHHHCCCEEEEEEEECC GLKVRCNSIHPAAILTPIWEPMLGADAGREERMAALVRDTPLRRFGMPEEVAAVALLLAT CCEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHCCCCHHHHHEEEEEEE DEATYITGSEFNIDGGLLAGSAATPVVLDDSET CCCEEEECCEEECCCCEEECCCCCCEEECCCCC >Mature Secondary Structure MDNKLTSRIAIITGAAQGIGAAIARRFLQEGCFVYVTDINDVLGRETARALGDRACYLHL CCCCHHCEEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCCCEEEEEE DVRCEEDWQRVTAHVVKAHGRLDVLVNNAGITGFEQGAVQHDPEHARLEDWQAVHHTNLD EEEECHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC GVFLGCKYAIRAMRHTETGSIINISSRSGLVGIPGAAAYASSKAAVRNHTKTVALYCAEQ EEEEHHHHHHHHHHCCCCCCEEEECCCCCEEECCCHHHHHCCHHHHHCCCEEEEEEEECC GLKVRCNSIHPAAILTPIWEPMLGADAGREERMAALVRDTPLRRFGMPEEVAAVALLLAT CCEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHCCCCHHHHHEEEEEEE DEATYITGSEFNIDGGLLAGSAATPVVLDDSET CCCEEEECCEEECCCCEEECCCCCCEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8382516; 2026158; 8617258 [H]