Definition Pseudomonas syringae pv. syringae B728a, complete genome.
Accession NC_007005
Length 6,093,698

Click here to switch to the map view.

The map label for this gene is yqjD [C]

Identifier: 66043307

GI number: 66043307

Start: 40264

End: 40590

Strand: Reverse

Name: yqjD [C]

Synonym: Psyr_0036

Alternate gene names: 66043307

Gene position: 40590-40264 (Counterclockwise)

Preceding gene: 66043310

Following gene: 66043305

Centisome position: 0.67

GC content: 57.8

Gene sequence:

>327_bases
ATGGCTACTACGTCACTTCGCAAAGCCTCGTTGCAGAGTATGGAAGCTGAAATCGAGAGCCTCCTGAAGTCCCTCGAGGG
CCTGAAAGCCGACGCTACCGACGAGTCGCGCAAGACACTGAAGAATCTGAAAGCCAACGCTGAAAGCGCGCTGAGCCATT
CGCGCAGCCTGCTCAGCGATGTCTACGAAGACGTCAAAGAGAAAACCCGCGAGAACGCGCTGGCAACCCGTGACTACGCT
CAGGAACACCCTTGGACCACCGCTGGCGTTGCGGTAGGTGCCATCGGCCTGATCGCTGCCTACATGCTGTTCAAGCGCGG
TAACTGA

Upstream 100 bases:

>100_bases
CGCGCGCAAAAGTTCAGACCTTTGCAAAAATCCCATCGCACTTTCCAAAAAGCGCGGAGTCCGAAACAACACGCCCAATC
ATCATTGCAGGAGAAACACC

Downstream 100 bases:

>100_bases
TCAGTTTCTGATCGGTTCCCCGGACCGCTTCAGCTCATTTTTCAACCACTGAGCAAGCTGCTGCGCCCGTCCATCGGCCG
CACGTCTGGGTACCCAAAGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 108; Mature: 107

Protein sequence:

>108_residues
MATTSLRKASLQSMEAEIESLLKSLEGLKADATDESRKTLKNLKANAESALSHSRSLLSDVYEDVKEKTRENALATRDYA
QEHPWTTAGVAVGAIGLIAAYMLFKRGN

Sequences:

>Translated_108_residues
MATTSLRKASLQSMEAEIESLLKSLEGLKADATDESRKTLKNLKANAESALSHSRSLLSDVYEDVKEKTRENALATRDYA
QEHPWTTAGVAVGAIGLIAAYMLFKRGN
>Mature_107_residues
ATTSLRKASLQSMEAEIESLLKSLEGLKADATDESRKTLKNLKANAESALSHSRSLLSDVYEDVKEKTRENALATRDYAQ
EHPWTTAGVAVGAIGLIAAYMLFKRGN

Specific function: Unknown

COG id: COG4575

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11785; Mature: 11654

Theoretical pI: Translated: 7.68; Mature: 7.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATTSLRKASLQSMEAEIESLLKSLEGLKADATDESRKTLKNLKANAESALSHSRSLLSD
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHH
VYEDVKEKTRENALATRDYAQEHPWTTAGVAVGAIGLIAAYMLFKRGN
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ATTSLRKASLQSMEAEIESLLKSLEGLKADATDESRKTLKNLKANAESALSHSRSLLSD
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHH
VYEDVKEKTRENALATRDYAQEHPWTTAGVAVGAIGLIAAYMLFKRGN
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA