| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
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The map label for this gene is catD [H]
Identifier: 66043302
GI number: 66043302
Start: 35445
End: 36269
Strand: Direct
Name: catD [H]
Synonym: Psyr_0031
Alternate gene names: 66043302
Gene position: 35445-36269 (Clockwise)
Preceding gene: 66043301
Following gene: 66043306
Centisome position: 0.58
GC content: 58.79
Gene sequence:
>825_bases ATGCCGGATCTACTCATCGACGGTAAGACACTTCACTATTCCGACCAAGGCACCGGACCGGTGGTATTGCTCGGTCACAG CTATCTCTGGGACAAGGCGATGTGGAGTGCACAGATTGATACGCTGGCCAGCCAGTATCGGGTGATCGTGCCGGATCTGT GGGGTCATGGCGATTCCAGCGGGTTTCCTGAGGGCACTCGCAATCTCGATGATCTGGCGCGGCATGCGCTGGCGCTGCTG GATCATTTGAATATCGAGCGTTGCAACATCGTAGGGTTGTCGGTCGGTGGCATGTGGGGCGCCATTGCTGCGCTGCTCGC GCCAGAGCGCATCACCGGGCTGGTGTTGATGGACACCTACCTGGGCAAGGAGACCGAGGCCAAGAAAGCCTACTATTTCT CGTTGCTGGACAAGCTGGAAGAGGTCGGGACCTTTCCTGAGCCGCTGCTGGATATCGTCGTACCGATCTTCTTCCGTCCC GGTATTGATCCGCAGTTGCCTGTGTACAGGTCGTTTCGTGCGGCGCTTGCCGGCATGAATGCCGAGCAGTTGCGTCAGTC CGTCGTACCGCTGGGAAGGATGATTTTCGGTCGTGATGACCGGCTCGGTTTGATCGAGCAATTGAATGCCGACACCACGC TGGTGATGTGTGGCGATGCAGACATTCCACGCCCGCCCGAGGAGACGCGTGAGATGGCCAGCCTGATCGGCTGCCCTTAT GTGCTGGTGCCTGAGGCCGGGCATATCGCCAATCTGGAAAATCCGGCGTTCGTATCGGGTGCGCTGATGACGTTCCTGGC GCGGGTTAACCAGAAGCAGGGTTGA
Upstream 100 bases:
>100_bases ACATCAACAAAATGGTCACGTATACGCTTCAACCTCATGAGCTGTCTGCCATGGGCGATTGAATCGAATGCTGAAAGACC AGAATAGAGGATCATCAGAA
Downstream 100 bases:
>100_bases GCTGAGCCGCGCCTTCAGGGACGGATGCAGACCCTCCGGAGCGGCGCTACCACGCTGTAGTGCTCACTTTTATACACAGA ACCGGGAATGCAGCGCTTTC
Product: Alpha/beta hydrolase fold
Products: NA
Alternate protein names: 3-oxoadipate enol-lactonase II; Beta-ketoadipate enol-lactone hydrolase II; Enol-lactone hydrolase II [H]
Number of amino acids: Translated: 274; Mature: 273
Protein sequence:
>274_residues MPDLLIDGKTLHYSDQGTGPVVLLGHSYLWDKAMWSAQIDTLASQYRVIVPDLWGHGDSSGFPEGTRNLDDLARHALALL DHLNIERCNIVGLSVGGMWGAIAALLAPERITGLVLMDTYLGKETEAKKAYYFSLLDKLEEVGTFPEPLLDIVVPIFFRP GIDPQLPVYRSFRAALAGMNAEQLRQSVVPLGRMIFGRDDRLGLIEQLNADTTLVMCGDADIPRPPEETREMASLIGCPY VLVPEAGHIANLENPAFVSGALMTFLARVNQKQG
Sequences:
>Translated_274_residues MPDLLIDGKTLHYSDQGTGPVVLLGHSYLWDKAMWSAQIDTLASQYRVIVPDLWGHGDSSGFPEGTRNLDDLARHALALL DHLNIERCNIVGLSVGGMWGAIAALLAPERITGLVLMDTYLGKETEAKKAYYFSLLDKLEEVGTFPEPLLDIVVPIFFRP GIDPQLPVYRSFRAALAGMNAEQLRQSVVPLGRMIFGRDDRLGLIEQLNADTTLVMCGDADIPRPPEETREMASLIGCPY VLVPEAGHIANLENPAFVSGALMTFLARVNQKQG >Mature_273_residues PDLLIDGKTLHYSDQGTGPVVLLGHSYLWDKAMWSAQIDTLASQYRVIVPDLWGHGDSSGFPEGTRNLDDLARHALALLD HLNIERCNIVGLSVGGMWGAIAALLAPERITGLVLMDTYLGKETEAKKAYYFSLLDKLEEVGTFPEPLLDIVVPIFFRPG IDPQLPVYRSFRAALAGMNAEQLRQSVVPLGRMIFGRDDRLGLIEQLNADTTLVMCGDADIPRPPEETREMASLIGCPYV LVPEAGHIANLENPAFVSGALMTFLARVNQKQG
Specific function: 3-hydroxyphenylpropionate degradation. [C]
COG id: COG0596
COG function: function code R; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000073 - InterPro: IPR012790 [H]
Pfam domain/function: PF00561 Abhydrolase_1 [H]
EC number: =3.1.1.24 [H]
Molecular weight: Translated: 30056; Mature: 29925
Theoretical pI: Translated: 4.66; Mature: 4.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDLLIDGKTLHYSDQGTGPVVLLGHSYLWDKAMWSAQIDTLASQYRVIVPDLWGHGDSS CCCCEECCCEEEECCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCC GFPEGTRNLDDLARHALALLDHLNIERCNIVGLSVGGMWGAIAALLAPERITGLVLMDTY CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHCHHHHHEEEEEHHH LGKETEAKKAYYFSLLDKLEEVGTFPEPLLDIVVPIFFRPGIDPQLPVYRSFRAALAGMN HCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCC AEQLRQSVVPLGRMIFGRDDRLGLIEQLNADTTLVMCGDADIPRPPEETREMASLIGCPY HHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCE VLVPEAGHIANLENPAFVSGALMTFLARVNQKQG EEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure PDLLIDGKTLHYSDQGTGPVVLLGHSYLWDKAMWSAQIDTLASQYRVIVPDLWGHGDSS CCCEECCCEEEECCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCC GFPEGTRNLDDLARHALALLDHLNIERCNIVGLSVGGMWGAIAALLAPERITGLVLMDTY CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHCHHHHHEEEEEHHH LGKETEAKKAYYFSLLDKLEEVGTFPEPLLDIVVPIFFRPGIDPQLPVYRSFRAALAGMN HCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCC AEQLRQSVVPLGRMIFGRDDRLGLIEQLNADTTLVMCGDADIPRPPEETREMASLIGCPY HHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCE VLVPEAGHIANLENPAFVSGALMTFLARVNQKQG EEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8125318; 670169 [H]