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The map label for this gene is rimN [H]

Identifier: 66043293

GI number: 66043293

Start: 25978

End: 26535

Strand: Direct

Name: rimN [H]

Synonym: Psyr_0022

Alternate gene names: 66043293

Gene position: 25978-26535 (Clockwise)

Preceding gene: 66043292

Following gene: 66043295

Centisome position: 0.43

GC content: 63.98

Gene sequence:

>558_bases
ATGGTCAGCAGTTGGCGAGTGCAACAAGCCGCTCAGGATATTCGAGCCGGTGCGGTGATTGCCTACCCGACCGAGGCAGT
CTGGGGGCTGGGGTGCGATCCGTGGGATGAAGAAGCGGTCTATCGTCTGCTGGCGATCAAGTCACGGCCGGTGGAAAAAG
GCCTGATCCTGATTGCCGACAACATTCGCCAGTTCGACTTCCTGTTCGAAGACTTCCCCGAGCTGTGGCTCGACCGCATG
GCCAGCACCTGGCCTGGGCCCAACACCTGGCTGGTACCGCATCAGAACCTGCTGCCCGAGTGGATCACCGGCATTCACGA
AACCGTGGCGCTACGTGTTACCGATCACCCGACCGTACGTGAACTGTGCGCGCTGGTCGGGCCGTTGATCTCCACCTCCG
CCAACCCGGCGGGCCGTCCGGCTGCGCGTTCGAGATTGCGCGTCGAGCAGTACTTCCGCGGGCAGATCGACGGGGTTCTC
GGCGGCAGCCTGGGCGGGCGTCGAAACCCCAGCGTGATACGTGACATCGCCACCGCGCAGATCGTGCGCGCTGGCTGA

Upstream 100 bases:

>100_bases
AGCTGGAACTGGACGGACGCATAAGCTGTGAAGCAGGACGATGGTTCGCCAGAGCGCCCTGAGGTTAAACTGCCGCCAGG
ATTCAGTGGAGAGACAAACA

Downstream 100 bases:

>100_bases
CGCTGGCGCACACAGACTGCATTCAGGGGCAGAGGATCAAGGGATCAGAATGGTCGAGCCAGTGGTGCGCCGGGCCGACA
GCTCGGTCTGCGCCCTGGCG

Product: SUA5/yciO/yrdC, N-terminal

Products: NA

Alternate protein names: t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN [H]

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MVSSWRVQQAAQDIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIADNIRQFDFLFEDFPELWLDRM
ASTWPGPNTWLVPHQNLLPEWITGIHETVALRVTDHPTVRELCALVGPLISTSANPAGRPAARSRLRVEQYFRGQIDGVL
GGSLGGRRNPSVIRDIATAQIVRAG

Sequences:

>Translated_185_residues
MVSSWRVQQAAQDIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIADNIRQFDFLFEDFPELWLDRM
ASTWPGPNTWLVPHQNLLPEWITGIHETVALRVTDHPTVRELCALVGPLISTSANPAGRPAARSRLRVEQYFRGQIDGVL
GGSLGGRRNPSVIRDIATAQIVRAG
>Mature_185_residues
MVSSWRVQQAAQDIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIADNIRQFDFLFEDFPELWLDRM
ASTWPGPNTWLVPHQNLLPEWITGIHETVALRVTDHPTVRELCALVGPLISTSANPAGRPAARSRLRVEQYFRGQIDGVL
GGSLGGRRNPSVIRDIATAQIVRAG

Specific function: Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine [H]

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI2367210, Length=170, Percent_Identity=48.8235294117647, Blast_Score=146, Evalue=8e-37,
Organism=Saccharomyces cerevisiae, GI6321269, Length=172, Percent_Identity=29.6511627906977, Blast_Score=72, Evalue=4e-14,
Organism=Drosophila melanogaster, GI78707274, Length=194, Percent_Identity=34.020618556701, Blast_Score=69, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 20534; Mature: 20534

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSSWRVQQAAQDIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIAD
CCCCHHHHHHHHHHHCCEEEEECCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEC
NIRQFDFLFEDFPELWLDRMASTWPGPNTWLVPHQNLLPEWITGIHETVALRVTDHPTVR
CHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHEEEEECCCCCHH
ELCALVGPLISTSANPAGRPAARSRLRVEQYFRGQIDGVLGGSLGGRRNPSVIRDIATAQ
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
IVRAG
HHCCC
>Mature Secondary Structure
MVSSWRVQQAAQDIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIAD
CCCCHHHHHHHHHHHCCEEEEECCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEC
NIRQFDFLFEDFPELWLDRMASTWPGPNTWLVPHQNLLPEWITGIHETVALRVTDHPTVR
CHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHEEEEECCCCCHH
ELCALVGPLISTSANPAGRPAARSRLRVEQYFRGQIDGVLGGSLGGRRNPSVIRDIATAQ
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
IVRAG
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA