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The map label for this gene is rimM [H]

Identifier: 62390889

GI number: 62390889

Start: 2133795

End: 2134310

Strand: Reverse

Name: rimM [H]

Synonym: cg2251

Alternate gene names: 62390889

Gene position: 2134310-2133795 (Counterclockwise)

Preceding gene: 62390891

Following gene: 62390887

Centisome position: 65.02

GC content: 53.88

Gene sequence:

>516_bases
ATGAGTACAGAGCAGGAACTGCAAATCGGAAAAGTTGTAAAATCCCACGGCATTCGGGGTGAAGTCGTGGTGGAATTGAG
CACCGATGATCCAGACATTCGCTTCGCCATTGGGGAAGTTCTCAACGGCAAGCAGGCAGGCAAGGAGCATTCACTGACCA
TCGATGCAGCGCGCATGCACCAAGGTCGACTCTTGGTGAAGTTCGCAGAGGTCCCAGATCGTACCGCTGCTGATTCTTTG
CGTGGAACTCGATTCTTTGCGGCACCTCTTGAGGATGAAGACGATGAGGATGGCTTCTACGACCATGAGTTGGAAGGTCT
GCGCGTCATTCACGAGGGCGAGGATATCGGTGAAGTCACCGGCGTGATGCATGGCCCAGCCGGTGAGATCCTGGAAGTCC
GCCTGACCTCAGGCAAGGAAACACTGATTCCTTTTGTGCACGCCATTGTTCCTGAGGTGGATCTGGAAGAAGGAACCGCA
ACGATCACCCCTCCAGAGGGCTTGTTAGATCTTTAG

Upstream 100 bases:

>100_bases
TAAAGATAGGTATCCACCCATCCTAATAAAAACGATTCCACCGGTATTAAACATTGCTGAAATAGGGCGGATGTGGGCTC
GTGACATAAACTTTCTATAC

Downstream 100 bases:

>100_bases
GCTCCGACAGATTTAATAGTCAGCAGCTTAAGACCATCATTGTCGCATCCATTGAATCCTTCCAGCGGAAGATATTCGGA
TGCGGTTTCACCTGGCGGGT

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 170

Protein sequence:

>171_residues
MSTEQELQIGKVVKSHGIRGEVVVELSTDDPDIRFAIGEVLNGKQAGKEHSLTIDAARMHQGRLLVKFAEVPDRTAADSL
RGTRFFAAPLEDEDDEDGFYDHELEGLRVIHEGEDIGEVTGVMHGPAGEILEVRLTSGKETLIPFVHAIVPEVDLEEGTA
TITPPEGLLDL

Sequences:

>Translated_171_residues
MSTEQELQIGKVVKSHGIRGEVVVELSTDDPDIRFAIGEVLNGKQAGKEHSLTIDAARMHQGRLLVKFAEVPDRTAADSL
RGTRFFAAPLEDEDDEDGFYDHELEGLRVIHEGEDIGEVTGVMHGPAGEILEVRLTSGKETLIPFVHAIVPEVDLEEGTA
TITPPEGLLDL
>Mature_170_residues
STEQELQIGKVVKSHGIRGEVVVELSTDDPDIRFAIGEVLNGKQAGKEHSLTIDAARMHQGRLLVKFAEVPDRTAADSLR
GTRFFAAPLEDEDDEDGFYDHELEGLRVIHEGEDIGEVTGVMHGPAGEILEVRLTSGKETLIPFVHAIVPEVDLEEGTAT
ITPPEGLLDL

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 18618; Mature: 18487

Theoretical pI: Translated: 4.23; Mature: 4.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTEQELQIGKVVKSHGIRGEVVVELSTDDPDIRFAIGEVLNGKQAGKEHSLTIDAARMH
CCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEHHHHCCCCCCCCCCEEEEHHHCC
QGRLLVKFAEVPDRTAADSLRGTRFFAAPLEDEDDEDGFYDHELEGLRVIHEGEDIGEVT
CCEEEEEEECCCCCCHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHH
GVMHGPAGEILEVRLTSGKETLIPFVHAIVPEVDLEEGTATITPPEGLLDL
HEEECCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCC
>Mature Secondary Structure 
STEQELQIGKVVKSHGIRGEVVVELSTDDPDIRFAIGEVLNGKQAGKEHSLTIDAARMH
CCHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEHHHHCCCCCCCCCCEEEEHHHCC
QGRLLVKFAEVPDRTAADSLRGTRFFAAPLEDEDDEDGFYDHELEGLRVIHEGEDIGEVT
CCEEEEEEECCCCCCHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHH
GVMHGPAGEILEVRLTSGKETLIPFVHAIVPEVDLEEGTATITPPEGLLDL
HEEECCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA