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The map label for this gene is yhgF [C]

Identifier: 62390881

GI number: 62390881

Start: 2124507

End: 2126783

Strand: Reverse

Name: yhgF [C]

Synonym: cg2241

Alternate gene names: 62390881

Gene position: 2126783-2124507 (Counterclockwise)

Preceding gene: 62390882

Following gene: 62390875

Centisome position: 64.79

GC content: 57.22

Gene sequence:

>2277_bases
ATGTCATCAATTTCTCGAACGATTGCTCTCGAACTCGGCGTCAAAGATGAACAAGTCGAGGCCGCCATCAAGCTCTTGGA
TGAAGGAAACACCGTTCCGTTCATCGCCAGGTACCGCAAGGAAATCACTGGGGGACTCGATGATACCCAACTGCGTGACC
TGGAAGAACGCCTCAGTTACCTCCGTGAGCTGGAGGATCGTAAACAAAGCATCCTCGCCGCGATTGAGGAACAAGGCAAA
CTCACCGACGATTTACGCTCGCTGATTTTGGGATGCGACACCAAGGCTCGCCTGGAGGATCTGTACCTGCCGTTCAAAAA
ACGGCGCAAGACGAAGGCCGATATCGCTAGGGAGGCGGGCCTGGAGGGGCTCGTCGATAAGCTTATCGACGCCCCGTCCC
TCGACGCCGCAGCGCAGGCAGCTGCATTTACGACTGAGGGCTTTGAGGATTCCAAAAAAGTTTTGGATGGCGCTCGCGCC
ATTTTGATTGACCGCTTCGCGCTCGATGCCGATTTGGTGGGCGAGGTGCGTGAGCAAATGTATCGCGCGGGTTCCATGGC
GGCATCGGTGGTGGCGGGCAAGGAGCAGGAAGGCGCAAAGTTCAAGGACTACTTTGAGTTTTCCGAACCTTTTGACAAGC
TTCCATCTCACCGAATTTTGGCGCTGCTGCGCGGTGAAAACGAAGGTGTGCTGAGCCTCAACCTCGATGCGGGCGACGAC
ATAATCTACGAAGGTTTGATCGCCGACCGATTCTCCCTGGACACCCACACTTCTAGCTGGCTGGCTGAGGCTGTGCGCTG
GGGTTGGCGCACCAAACTGTATGTGTCCTCCGGATTGGATGTGCGCATGCGTCTGAAAGAAAAAGCAGAGGAAGGCGCAC
TCGATGTGTTTGCCACCAACCTCCGCGACGTTCTCCTTGCAGCTCCCGCTGGTCAGCGCTCCACAATTGGCCTTGACCCG
GGATTCCGCAACGGTGTGAAAGTAGCTGTCGTGGATTCCACCGGTAAGGATGTTGCCACCACGATCGTCTACCCACACCA
GCCCCAAAACCGCTGGAAGGAAGCCGTATCCGAACTGGCTAACCTGTGCGCGACCCACGGTGTGGAACTCATGGCGATCG
GCAACGGAACCGCCTCGAGGGAAACGGAAAAACTCGCCGGCGAAGTAGCTGACATGATCAAAGCCGCAGGTGGCACGCGA
CCAACCCCCGTGGTGGTCTCCGAATCGGGCGCATCCGTGTACTCGGCATCACCGATCGCAGCCGAAGAATTCCCCGACAT
GGACGTCTCCCTCCGCGGTGCAGTTTCTATCGCGAGGCGACTCCAGGATCCACTGGCGGAGCTCGTCAAGATTGAGCCCA
AAGCCATCGGAGTCGGCCAGTACCAACACGATGTCAACCAGGTTGCACTTGCCAAAACCCTTGATGGTGTCGTCGAAGAC
GCAGTAAACGCAGTCGGAGTTAACCTCAACACCGCATCCGCACCACTTCTTACCCGAGTTGCCGGAGTGACCTCCACCTT
GGCAAACAATATCGTGGCCTACCGCAACGAAAACGGTGGATTCTCCTCCCGAAAAGAACTGAACAAAGTTCCTCGCCTGG
GACCCAAAGCCTTTGAACAGTGTGCTGGCTTCCTCCGCATTTCTGGATCCACCGACCCTCTCGACGCCTCCGCTGTTCAC
CCCGAGGCGTACCCAGTTGTTCGCAACATTGCGAAAGCCACAGGATTGGATGTCTCGGGACTGATCGGAAACTCTGCGGT
GCTCACCAAATTGAAGCCCGCTGATTTCGCTGATGAACGATTCGGCATCCCCACCGTCACCGACATCATCGCCGAGCTGG
ATAAACCCGGACGTGACCCCCGCCCAGAATTCAAAACCGCCAGCTTCAAAGAAGGCGTGGAGAAAATCTCCGACCTCACA
CCCGGCATGATCCTGGAAGGAACTGTCACCAACGTTGCGGCGTTCGGCGCATTCGTTGACGTGGGAGTGCACCAAGATGG
CCTCGTTCACGTTTCCGCGATGAGCGACAAATTCATCTCCAACCCCCACGAAGTTGTTCGCTCTGGTGAGGTCGTGAAGG
TAAAGGTCATGGAAGTTGACGTCGACCGCAAACGCATCGGCCTTTCCCTCCGCTTGACCGATGAACCCGGTGCCCCAGCT
CCGCAAAAGCGCGGAAACCGACCAGCCAAACAGCAGCGAGCTCCGCAAAAACAGTCCGCTAAGCCCGCCACAGGTTCCAT
GGCAGATGCTTTACGACGCGCCGGCCTCGGTGGCTAA

Upstream 100 bases:

>100_bases
GATCTGATTGAAAATCCCGAACTTCCCACCGGCGATGTGGTTTTGCAGGGGCAGGTGATCCTTCGGGGGTCGAGCACACA
TTCCGGGTAGAATTGCCCAA

Downstream 100 bases:

>100_bases
GGCAACTTTCAAACCAAGCGGGAGTGTTCTCAAGCTCCCCTTGGTCTGAATCTCACATTTCGAGAGCGGATTAGTGCAGT
ATTAGGCCAAGGACTGATTC

Product: transcriptional accessory protein, RNA binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 758; Mature: 757

Protein sequence:

>758_residues
MSSISRTIALELGVKDEQVEAAIKLLDEGNTVPFIARYRKEITGGLDDTQLRDLEERLSYLRELEDRKQSILAAIEEQGK
LTDDLRSLILGCDTKARLEDLYLPFKKRRKTKADIAREAGLEGLVDKLIDAPSLDAAAQAAAFTTEGFEDSKKVLDGARA
ILIDRFALDADLVGEVREQMYRAGSMAASVVAGKEQEGAKFKDYFEFSEPFDKLPSHRILALLRGENEGVLSLNLDAGDD
IIYEGLIADRFSLDTHTSSWLAEAVRWGWRTKLYVSSGLDVRMRLKEKAEEGALDVFATNLRDVLLAAPAGQRSTIGLDP
GFRNGVKVAVVDSTGKDVATTIVYPHQPQNRWKEAVSELANLCATHGVELMAIGNGTASRETEKLAGEVADMIKAAGGTR
PTPVVVSESGASVYSASPIAAEEFPDMDVSLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVNQVALAKTLDGVVED
AVNAVGVNLNTASAPLLTRVAGVTSTLANNIVAYRNENGGFSSRKELNKVPRLGPKAFEQCAGFLRISGSTDPLDASAVH
PEAYPVVRNIAKATGLDVSGLIGNSAVLTKLKPADFADERFGIPTVTDIIAELDKPGRDPRPEFKTASFKEGVEKISDLT
PGMILEGTVTNVAAFGAFVDVGVHQDGLVHVSAMSDKFISNPHEVVRSGEVVKVKVMEVDVDRKRIGLSLRLTDEPGAPA
PQKRGNRPAKQQRAPQKQSAKPATGSMADALRRAGLGG

Sequences:

>Translated_758_residues
MSSISRTIALELGVKDEQVEAAIKLLDEGNTVPFIARYRKEITGGLDDTQLRDLEERLSYLRELEDRKQSILAAIEEQGK
LTDDLRSLILGCDTKARLEDLYLPFKKRRKTKADIAREAGLEGLVDKLIDAPSLDAAAQAAAFTTEGFEDSKKVLDGARA
ILIDRFALDADLVGEVREQMYRAGSMAASVVAGKEQEGAKFKDYFEFSEPFDKLPSHRILALLRGENEGVLSLNLDAGDD
IIYEGLIADRFSLDTHTSSWLAEAVRWGWRTKLYVSSGLDVRMRLKEKAEEGALDVFATNLRDVLLAAPAGQRSTIGLDP
GFRNGVKVAVVDSTGKDVATTIVYPHQPQNRWKEAVSELANLCATHGVELMAIGNGTASRETEKLAGEVADMIKAAGGTR
PTPVVVSESGASVYSASPIAAEEFPDMDVSLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVNQVALAKTLDGVVED
AVNAVGVNLNTASAPLLTRVAGVTSTLANNIVAYRNENGGFSSRKELNKVPRLGPKAFEQCAGFLRISGSTDPLDASAVH
PEAYPVVRNIAKATGLDVSGLIGNSAVLTKLKPADFADERFGIPTVTDIIAELDKPGRDPRPEFKTASFKEGVEKISDLT
PGMILEGTVTNVAAFGAFVDVGVHQDGLVHVSAMSDKFISNPHEVVRSGEVVKVKVMEVDVDRKRIGLSLRLTDEPGAPA
PQKRGNRPAKQQRAPQKQSAKPATGSMADALRRAGLGG
>Mature_757_residues
SSISRTIALELGVKDEQVEAAIKLLDEGNTVPFIARYRKEITGGLDDTQLRDLEERLSYLRELEDRKQSILAAIEEQGKL
TDDLRSLILGCDTKARLEDLYLPFKKRRKTKADIAREAGLEGLVDKLIDAPSLDAAAQAAAFTTEGFEDSKKVLDGARAI
LIDRFALDADLVGEVREQMYRAGSMAASVVAGKEQEGAKFKDYFEFSEPFDKLPSHRILALLRGENEGVLSLNLDAGDDI
IYEGLIADRFSLDTHTSSWLAEAVRWGWRTKLYVSSGLDVRMRLKEKAEEGALDVFATNLRDVLLAAPAGQRSTIGLDPG
FRNGVKVAVVDSTGKDVATTIVYPHQPQNRWKEAVSELANLCATHGVELMAIGNGTASRETEKLAGEVADMIKAAGGTRP
TPVVVSESGASVYSASPIAAEEFPDMDVSLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVNQVALAKTLDGVVEDA
VNAVGVNLNTASAPLLTRVAGVTSTLANNIVAYRNENGGFSSRKELNKVPRLGPKAFEQCAGFLRISGSTDPLDASAVHP
EAYPVVRNIAKATGLDVSGLIGNSAVLTKLKPADFADERFGIPTVTDIIAELDKPGRDPRPEFKTASFKEGVEKISDLTP
GMILEGTVTNVAAFGAFVDVGVHQDGLVHVSAMSDKFISNPHEVVRSGEVVKVKVMEVDVDRKRIGLSLRLTDEPGAPAP
QKRGNRPAKQQRAPQKQSAKPATGSMADALRRAGLGG

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=773, Percent_Identity=33.6351875808538, Blast_Score=379, Evalue=1e-105,
Organism=Homo sapiens, GI27597090, Length=770, Percent_Identity=22.7272727272727, Blast_Score=107, Evalue=5e-23,
Organism=Escherichia coli, GI87082262, Length=763, Percent_Identity=58.3224115334207, Blast_Score=866, Evalue=0.0,
Organism=Escherichia coli, GI1787140, Length=89, Percent_Identity=38.2022471910112, Blast_Score=64, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17511129, Length=710, Percent_Identity=27.887323943662, Blast_Score=221, Evalue=8e-58,
Organism=Caenorhabditis elegans, GI17552892, Length=292, Percent_Identity=30.8219178082192, Blast_Score=89, Evalue=8e-18,
Organism=Drosophila melanogaster, GI62484314, Length=753, Percent_Identity=32.5365205843293, Blast_Score=375, Evalue=1e-104,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003583
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 81550; Mature: 81419

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSISRTIALELGVKDEQVEAAIKLLDEGNTVPFIARYRKEITGGLDDTQLRDLEERLSY
CCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LRELEDRKQSILAAIEEQGKLTDDLRSLILGCDTKARLEDLYLPFKKRRKTKADIAREAG
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHC
LEGLVDKLIDAPSLDAAAQAAAFTTEGFEDSKKVLDGARAILIDRFALDADLVGEVREQM
HHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
YRAGSMAASVVAGKEQEGAKFKDYFEFSEPFDKLPSHRILALLRGENEGVLSLNLDAGDD
HHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHCCCCEEEEEEECCCCCEEEEECCCCCC
IIYEGLIADRFSLDTHTSSWLAEAVRWGWRTKLYVSSGLDVRMRLKEKAEEGALDVFATN
HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEECCCCEEHHHHHHHHCCCHHHHHHH
LRDVLLAAPAGQRSTIGLDPGFRNGVKVAVVDSTGKDVATTIVYPHQPQNRWKEAVSELA
HHHHHEECCCCCCCEECCCCCCCCCEEEEEEECCCCCEEEEEEECCCCHHHHHHHHHHHH
NLCATHGVELMAIGNGTASRETEKLAGEVADMIKAAGGTRPTPVVVSESGASVYSASPIA
HHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCEECCCCCC
AEEFPDMDVSLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVNQVALAKTLDGVVED
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
AVNAVGVNLNTASAPLLTRVAGVTSTLANNIVAYRNENGGFSSRKELNKVPRLGPKAFEQ
HHHHHCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHCCCCCHHHHHH
CAGFLRISGSTDPLDASAVHPEAYPVVRNIAKATGLDVSGLIGNSAVLTKLKPADFADER
HCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHCCCCCCCEEECCCCCCCCCC
FGIPTVTDIIAELDKPGRDPRPEFKTASFKEGVEKISDLTPGMILEGTVTNVAAFGAFVD
CCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHC
VGVHQDGLVHVSAMSDKFISNPHEVVRSGEVVKVKVMEVDVDRKRIGLSLRLTDEPGAPA
CCCCCCCCEEEEEHHHHHHCCHHHHHHCCCEEEEEEEEEECCHHHCCEEEEEECCCCCCC
PQKRGNRPAKQQRAPQKQSAKPATGSMADALRRAGLGG
CHHCCCCCHHHHCCCCHHCCCCCCCHHHHHHHHCCCCC
>Mature Secondary Structure 
SSISRTIALELGVKDEQVEAAIKLLDEGNTVPFIARYRKEITGGLDDTQLRDLEERLSY
CCCCCEEEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LRELEDRKQSILAAIEEQGKLTDDLRSLILGCDTKARLEDLYLPFKKRRKTKADIAREAG
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHC
LEGLVDKLIDAPSLDAAAQAAAFTTEGFEDSKKVLDGARAILIDRFALDADLVGEVREQM
HHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
YRAGSMAASVVAGKEQEGAKFKDYFEFSEPFDKLPSHRILALLRGENEGVLSLNLDAGDD
HHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHCCCCEEEEEEECCCCCEEEEECCCCCC
IIYEGLIADRFSLDTHTSSWLAEAVRWGWRTKLYVSSGLDVRMRLKEKAEEGALDVFATN
HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEECCCCEEHHHHHHHHCCCHHHHHHH
LRDVLLAAPAGQRSTIGLDPGFRNGVKVAVVDSTGKDVATTIVYPHQPQNRWKEAVSELA
HHHHHEECCCCCCCEECCCCCCCCCEEEEEEECCCCCEEEEEEECCCCHHHHHHHHHHHH
NLCATHGVELMAIGNGTASRETEKLAGEVADMIKAAGGTRPTPVVVSESGASVYSASPIA
HHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCEECCCCCC
AEEFPDMDVSLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVNQVALAKTLDGVVED
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
AVNAVGVNLNTASAPLLTRVAGVTSTLANNIVAYRNENGGFSSRKELNKVPRLGPKAFEQ
HHHHHCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHCCCCCHHHHHH
CAGFLRISGSTDPLDASAVHPEAYPVVRNIAKATGLDVSGLIGNSAVLTKLKPADFADER
HCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHCCCCCCCEEECCCCCCCCCC
FGIPTVTDIIAELDKPGRDPRPEFKTASFKEGVEKISDLTPGMILEGTVTNVAAFGAFVD
CCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHC
VGVHQDGLVHVSAMSDKFISNPHEVVRSGEVVKVKVMEVDVDRKRIGLSLRLTDEPGAPA
CCCCCCCCEEEEEHHHHHHCCHHHHHHCCCEEEEEEEEEECCHHHCCEEEEEECCCCCCC
PQKRGNRPAKQQRAPQKQSAKPATGSMADALRRAGLGG
CHHCCCCCHHHHCCCCHHCCCCCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10761919 [H]