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The map label for this gene is dapF [H]

Identifier: 62390783

GI number: 62390783

Start: 2021891

End: 2022724

Strand: Reverse

Name: dapF [H]

Synonym: cg2129

Alternate gene names: 62390783

Gene position: 2022724-2021891 (Counterclockwise)

Preceding gene: 62390784

Following gene: 62390780

Centisome position: 61.62

GC content: 56.12

Gene sequence:

>834_bases
GTGAATTTGACCATCCCCTTTGCCAAAGGCCACGCCACCGAAAACGACTTCATCATCATCCCCGATGAGGATGCGCGCCT
AGATTTAACTCCAGAAATGGTGGTCACGCTGTGTGACCGCCGCGCCGGGATCGGTGCTGATGGTATCCTCCGCGTGGTTA
AAGCTGCAGACGTAGAAGGCTCCACGGTCGACCCATCGCTGTGGTTCATGGATTACCGCAACGCCGATGGATCTTTGGCT
GAAATGTGCGGCAATGGTGTGCGCCTGTTCGCGCACTGGCTGTACTCCCGCGGTCTTGTTGATAATACGAGCTTTGATAT
CGGTACCCGCGCCGGTGTCCGCCACGTTGATATTTTGCAGGCAGATCAACATTCTGCGCAGGTCCGCGTTGATATGGGCA
TCCCTGACGTCACGGGATTATCCACCTGCGACATCAACGGCCAAGTATTCGCTGGCCTTGGCGTTGATATGGGTAACCCA
CACCTAGCGTGCGTTGTGCCGGGCTTAAGTGCGTCGGCTCTTGCCGATATGGAACTGCGCGCACCTACGTTTGATCAGGA
ATTCTTCCCCCACGGTGTGAACGTAGAAATCGTCACAGAATTAGAAGATGACGCAGTATCGATGCGCGTGTGGGAACGCG
GAGTGGGCGAAACCCGCTCCTGTGGCACGGGAACCGTTGCTGCAGCGTGTGCTGCTTTAGCTGATGCTGGATTGGGAGAA
GGCACAGTTAAAGTGTGCGTTCCAGGTGGGGAAGTAGAAGTCCAGATCTTTGACGACGGCTCCACACTCACCGGCCCAAG
CGCCATCATCGCACTCGGTGAGGTGCAGATCTAA

Upstream 100 bases:

>100_bases
AACGCAGCTGGTTCAACAGAGACCACCGCGTGTCCTGGGTCGACGCCTCTGGCGATCCCACCGCACAAGCCTTGGAGATT
TTGGGTCTACAATAGCGAGG

Downstream 100 bases:

>100_bases
GATTCGCGATTGTAGTTCGGCCCAAGTTTCTGGGCCGCTTTACGCGCATCCAGCCACGTTTCCCGCAGCTCTAGTGCGCG
CTCGTCCGTTACTTTGAGAA

Product: diaminopimelate epimerase

Products: NA

Alternate protein names: DAP epimerase [H]

Number of amino acids: Translated: 277; Mature: 277

Protein sequence:

>277_residues
MNLTIPFAKGHATENDFIIIPDEDARLDLTPEMVVTLCDRRAGIGADGILRVVKAADVEGSTVDPSLWFMDYRNADGSLA
EMCGNGVRLFAHWLYSRGLVDNTSFDIGTRAGVRHVDILQADQHSAQVRVDMGIPDVTGLSTCDINGQVFAGLGVDMGNP
HLACVVPGLSASALADMELRAPTFDQEFFPHGVNVEIVTELEDDAVSMRVWERGVGETRSCGTGTVAAACAALADAGLGE
GTVKVCVPGGEVEVQIFDDGSTLTGPSAIIALGEVQI

Sequences:

>Translated_277_residues
MNLTIPFAKGHATENDFIIIPDEDARLDLTPEMVVTLCDRRAGIGADGILRVVKAADVEGSTVDPSLWFMDYRNADGSLA
EMCGNGVRLFAHWLYSRGLVDNTSFDIGTRAGVRHVDILQADQHSAQVRVDMGIPDVTGLSTCDINGQVFAGLGVDMGNP
HLACVVPGLSASALADMELRAPTFDQEFFPHGVNVEIVTELEDDAVSMRVWERGVGETRSCGTGTVAAACAALADAGLGE
GTVKVCVPGGEVEVQIFDDGSTLTGPSAIIALGEVQI
>Mature_277_residues
MNLTIPFAKGHATENDFIIIPDEDARLDLTPEMVVTLCDRRAGIGADGILRVVKAADVEGSTVDPSLWFMDYRNADGSLA
EMCGNGVRLFAHWLYSRGLVDNTSFDIGTRAGVRHVDILQADQHSAQVRVDMGIPDVTGLSTCDINGQVFAGLGVDMGNP
HLACVVPGLSASALADMELRAPTFDQEFFPHGVNVEIVTELEDDAVSMRVWERGVGETRSCGTGTVAAACAALADAGLGE
GTVKVCVPGGEVEVQIFDDGSTLTGPSAIIALGEVQI

Specific function: Biosynthesis of lysine from aspartate semialdehyde; sixth step. [C]

COG id: COG0253

COG function: function code E; Diaminopimelate epimerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the diaminopimelate epimerase family [H]

Homologues:

Organism=Escherichia coli, GI87082334, Length=289, Percent_Identity=29.757785467128, Blast_Score=108, Evalue=3e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001653
- InterPro:   IPR018510 [H]

Pfam domain/function: PF01678 DAP_epimerase [H]

EC number: =5.1.1.7 [H]

Molecular weight: Translated: 29203; Mature: 29203

Theoretical pI: Translated: 4.10; Mature: 4.10

Prosite motif: PS01326 DAP_EPIMERASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLTIPFAKGHATENDFIIIPDEDARLDLTPEMVVTLCDRRAGIGADGILRVVKAADVEG
CCEEEEECCCCCCCCCEEEECCCCCEEECCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCC
STVDPSLWFMDYRNADGSLAEMCGNGVRLFAHWLYSRGLVDNTSFDIGTRAGVRHVDILQ
CCCCCEEEEEEECCCCCHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEE
ADQHSAQVRVDMGIPDVTGLSTCDINGQVFAGLGVDMGNPHLACVVPGLSASALADMELR
CCCCCCEEEEEECCCCCCCCEEECCCCEEEEEECCCCCCCEEEEEECCCCHHHEECEEEC
APTFDQEFFPHGVNVEIVTELEDDAVSMRVWERGVGETRSCGTGTVAAACAALADAGLGE
CCCCCHHHCCCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCC
GTVKVCVPGGEVEVQIFDDGSTLTGPSAIIALGEVQI
CEEEEEECCCEEEEEEEECCCCCCCCCEEEEEEEECC
>Mature Secondary Structure
MNLTIPFAKGHATENDFIIIPDEDARLDLTPEMVVTLCDRRAGIGADGILRVVKAADVEG
CCEEEEECCCCCCCCCEEEECCCCCEEECCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCC
STVDPSLWFMDYRNADGSLAEMCGNGVRLFAHWLYSRGLVDNTSFDIGTRAGVRHVDILQ
CCCCCEEEEEEECCCCCHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEE
ADQHSAQVRVDMGIPDVTGLSTCDINGQVFAGLGVDMGNPHLACVVPGLSASALADMELR
CCCCCCEEEEEECCCCCCCCEEECCCCEEEEEECCCCCCCEEEEEECCCCHHHEECEEEC
APTFDQEFFPHGVNVEIVTELEDDAVSMRVWERGVGETRSCGTGTVAAACAALADAGLGE
CCCCCHHHCCCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCC
GTVKVCVPGGEVEVQIFDDGSTLTGPSAIIALGEVQI
CEEEEEECCCEEEEEEEECCCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA