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The map label for this gene is rapA [C]

Identifier: 62390520

GI number: 62390520

Start: 1737470

End: 1740148

Strand: Reverse

Name: rapA [C]

Synonym: cg1843

Alternate gene names: 62390520

Gene position: 1740148-1737470 (Counterclockwise)

Preceding gene: 62390521

Following gene: 62390518

Centisome position: 53.01

GC content: 57.56

Gene sequence:

>2679_bases
ATGGCAGAATCAAACGCTATGGACCGGGCACAAATCTCTGCACTGCTAGATAGAGCACAGCACACAATCAACCTTGCCGA
ACAAGCAAACAACGTGCTCCGACTGTTGAAAACACCCGGAACGGCCACAGTAGGGGACAACGGGACACTCGGCACCGATA
CCTATCTGATCCCATCCCGCAACATCACCTGGCCTGACAACCTGTATGTCAACGTCTTTCTAGACGGCATGAATGCAGAA
GCCACCCTTACCGATTACGTCGCATCAGTCGCTTCGATCCCACGCCTATGCCAGATCATCAACGAGGGCCAAGGCGGCAT
GTTCCGCAGACTATTCAACCCCACCAAGGTCCAAGCCGGCGACCAAGCTGTCTTCGACCTCATGGTCAAACTCGACGAGA
TTTCATCTACCACCCACGAAGTCTCCCGCATGCTCGAGGGCGTCCACGCTGCCCGCACCCGCCAACAACAAGGCGTTGCA
CTTTTCCCAGGTATTCATGGAGTGGGAGAGCGCTACATCGAACGCGCACAACAGGTACTCGCCTCAGCCCTCGGTATCGC
TGGATTCGGTGCCGAACCCTGGGACGGACATACCCTTGCCCAAGCGCGCCGGGTAGTCCAACGCTACGCCCAAGATCCTA
ACTCCGAATACCGGCTGAAAAGCGAAGCCGAGAAACACCTCACATCCATCAACGAGCTCCGCGTACAGATACTCCTCGAA
CAACTCCCCGTTGATGCCCTACGCATGGCTACCGACCACCGCCTGCGCTTTGGATCCCTCGATTCCATCCACGTCGCAAC
CGTCGCCGACGTCCTAAAAACACACACCTCCATCCTCACCACCGTGCAAGGTATCGGCGCCCAAACCGCGGGGCGGATGA
AAGCCGCAGCAGAAACACTCAAACAAGAAGCACTACGCCGCCAAAACACCTCCATCGGCGACGAACCTACCCAACCCGCC
ATGCGTCTAATCAACGTGCTGGCCCGCTTCGACCAAACCGAAACCATCACGCCCGAAGAACGCGCCCGCCGCACCCGCGT
CATCGACTACGTAGAACACATACCCCCAAGCCTCGACCCCTACATCGTCATCAACCCAGCAACGCCTGAGTTCAACAACT
TCACCGACGACCTCCGCTGGATCGACGCAAACCCCAACCTCTTCCACCCACAAACAATCACCACCCCACCCGCCGACATC
TGGGACGACTACATCTCCCGTCCCGCTCACTACCAAGGCCTGCTAGCCACGCTGCTCGGCCGCGACATCGAAGGCGCAGA
CGAACTCCTCGACGCCACCACCCTCCAAAAAATCAGAGACCTCACCCTCGACAAAACTCATCTCACCGACCTCCACCTCC
GCGGATACCAATCATTCGGCGCCCGCTTCGCCATCATCCAAAAGAAAACCCTCCTCGGCGACGACATGGGACTCGGCAAA
ACAGTCCAAGCCCTCTCCGCAGCTGCACACCTTGCCGCCACCGAAAAAGACTTCCGCACCCTCGTCGTCGTACCCGCATC
CGTCATTGTTAACTGGACCCGCGAATGCAAACGCTTCCTCAACCTCCCCGTATTCATCGCCCACGGAGACAACAAACAAG
ACGCCATCAACGCCTGGTCTAACACCAACGGAATCGCAATCTGCACCTACGACGGCGTCCGCACCATGGACATCCCCGCG
CCGGGTCTGGTCATTGCCGATGAAGCCCACCTGATCAAAAACCCCTCCACCAAACGCACCCAAGCACTGCGCAAACTTAT
CGACGCCGCCCCATACACCCTTCTGATGACCGGCACACCACTAGAAAACAAAGTGGAAGAGTTTGTAAATCTCGTGCGCT
ACATCCAACCGGAGCTGATCACCCGTGGCATGTCCAAAATGCAGGCCGAGAATTTCCGCGAGCGCATCGCACCAGCCTAT
CTGCGCAGAAATCAAGCTGATGTGCTTGACGAACTCCCAGAGCGCACCGACTCCATCGACTGGATCGACCTCACCCCAGA
AGACCGCAGCGCCTACGACGACCAAGTCCGCCAAGGCAGCTGGATGGGCATGCGCCGCTCCGCCATGCTCTCACCAACAC
CACGCCTAACTTCCGCAAAAATGCAACGCATCCTAGAACTCTTCGAAGAAGCAGAAGAACACGGCCGCAAAGCCCTCATC
TTCACCTACTTCCTCGACGTCCTCGACGAACTGGAAAAGCATCTAGGCGAGCGCGTCATCGGCCGCATTTCCGGCGACGT
GCCAGCCACCAAGCGCCAATTGCTTGTCGACGCCCTGTCCCACTCCAAACCCGGATCCGCCCTCATTGCCCAAATCACCG
CCGGGGGAGTAGGCCTAAACATCCAATCCGCGAGCCTATGCATTATTTGTGAACCTCAAGTAAAGCCAACCATCGAACAG
CAGGCCGTCGCCCGAGTCCACCGCATGGGCCAAACCGCCACCGTCCAAGTCCACCGACTCATCGGCGACGAAACCGCAGA
CGAACGCATGCTAGAAATCCTGGCAGGCAAAACTCACGTCTTCGACGTCTACGCCCGGCTATCTGAAACCGCAGAGATTC
CAGATGCTGTGGATATCACTGAATCACAGCTGGCAGCACGGGTTATTGATGAGGAGCGTGCACGGTTAGGGCTTACTGAA
TCCACTGGCCCTAAAGATGAAGAAACGGCCTTAAGCTAG

Upstream 100 bases:

>100_bases
CTCCACCCTGGCGAATAGAACAAACAAGGTTCTTCGCATGAAGGACTACCACCCAGAACTGAAGGTCTAAAAGCTTTTCC
CGCCCGGTTCAATAGCGTTA

Downstream 100 bases:

>100_bases
TTGCCTAAGGCCGGAATTAATCGGTGTGGGGAGACGTCGAAAAGCAATGCTTTAAGCGTCGTTGTAGACGCCCCGGCCGA
GGAAGTCGCAGGCGCTCATC

Product: SNF2 family DNA/RNA helicase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 892; Mature: 891

Protein sequence:

>892_residues
MAESNAMDRAQISALLDRAQHTINLAEQANNVLRLLKTPGTATVGDNGTLGTDTYLIPSRNITWPDNLYVNVFLDGMNAE
ATLTDYVASVASIPRLCQIINEGQGGMFRRLFNPTKVQAGDQAVFDLMVKLDEISSTTHEVSRMLEGVHAARTRQQQGVA
LFPGIHGVGERYIERAQQVLASALGIAGFGAEPWDGHTLAQARRVVQRYAQDPNSEYRLKSEAEKHLTSINELRVQILLE
QLPVDALRMATDHRLRFGSLDSIHVATVADVLKTHTSILTTVQGIGAQTAGRMKAAAETLKQEALRRQNTSIGDEPTQPA
MRLINVLARFDQTETITPEERARRTRVIDYVEHIPPSLDPYIVINPATPEFNNFTDDLRWIDANPNLFHPQTITTPPADI
WDDYISRPAHYQGLLATLLGRDIEGADELLDATTLQKIRDLTLDKTHLTDLHLRGYQSFGARFAIIQKKTLLGDDMGLGK
TVQALSAAAHLAATEKDFRTLVVVPASVIVNWTRECKRFLNLPVFIAHGDNKQDAINAWSNTNGIAICTYDGVRTMDIPA
PGLVIADEAHLIKNPSTKRTQALRKLIDAAPYTLLMTGTPLENKVEEFVNLVRYIQPELITRGMSKMQAENFRERIAPAY
LRRNQADVLDELPERTDSIDWIDLTPEDRSAYDDQVRQGSWMGMRRSAMLSPTPRLTSAKMQRILELFEEAEEHGRKALI
FTYFLDVLDELEKHLGERVIGRISGDVPATKRQLLVDALSHSKPGSALIAQITAGGVGLNIQSASLCIICEPQVKPTIEQ
QAVARVHRMGQTATVQVHRLIGDETADERMLEILAGKTHVFDVYARLSETAEIPDAVDITESQLAARVIDEERARLGLTE
STGPKDEETALS

Sequences:

>Translated_892_residues
MAESNAMDRAQISALLDRAQHTINLAEQANNVLRLLKTPGTATVGDNGTLGTDTYLIPSRNITWPDNLYVNVFLDGMNAE
ATLTDYVASVASIPRLCQIINEGQGGMFRRLFNPTKVQAGDQAVFDLMVKLDEISSTTHEVSRMLEGVHAARTRQQQGVA
LFPGIHGVGERYIERAQQVLASALGIAGFGAEPWDGHTLAQARRVVQRYAQDPNSEYRLKSEAEKHLTSINELRVQILLE
QLPVDALRMATDHRLRFGSLDSIHVATVADVLKTHTSILTTVQGIGAQTAGRMKAAAETLKQEALRRQNTSIGDEPTQPA
MRLINVLARFDQTETITPEERARRTRVIDYVEHIPPSLDPYIVINPATPEFNNFTDDLRWIDANPNLFHPQTITTPPADI
WDDYISRPAHYQGLLATLLGRDIEGADELLDATTLQKIRDLTLDKTHLTDLHLRGYQSFGARFAIIQKKTLLGDDMGLGK
TVQALSAAAHLAATEKDFRTLVVVPASVIVNWTRECKRFLNLPVFIAHGDNKQDAINAWSNTNGIAICTYDGVRTMDIPA
PGLVIADEAHLIKNPSTKRTQALRKLIDAAPYTLLMTGTPLENKVEEFVNLVRYIQPELITRGMSKMQAENFRERIAPAY
LRRNQADVLDELPERTDSIDWIDLTPEDRSAYDDQVRQGSWMGMRRSAMLSPTPRLTSAKMQRILELFEEAEEHGRKALI
FTYFLDVLDELEKHLGERVIGRISGDVPATKRQLLVDALSHSKPGSALIAQITAGGVGLNIQSASLCIICEPQVKPTIEQ
QAVARVHRMGQTATVQVHRLIGDETADERMLEILAGKTHVFDVYARLSETAEIPDAVDITESQLAARVIDEERARLGLTE
STGPKDEETALS
>Mature_891_residues
AESNAMDRAQISALLDRAQHTINLAEQANNVLRLLKTPGTATVGDNGTLGTDTYLIPSRNITWPDNLYVNVFLDGMNAEA
TLTDYVASVASIPRLCQIINEGQGGMFRRLFNPTKVQAGDQAVFDLMVKLDEISSTTHEVSRMLEGVHAARTRQQQGVAL
FPGIHGVGERYIERAQQVLASALGIAGFGAEPWDGHTLAQARRVVQRYAQDPNSEYRLKSEAEKHLTSINELRVQILLEQ
LPVDALRMATDHRLRFGSLDSIHVATVADVLKTHTSILTTVQGIGAQTAGRMKAAAETLKQEALRRQNTSIGDEPTQPAM
RLINVLARFDQTETITPEERARRTRVIDYVEHIPPSLDPYIVINPATPEFNNFTDDLRWIDANPNLFHPQTITTPPADIW
DDYISRPAHYQGLLATLLGRDIEGADELLDATTLQKIRDLTLDKTHLTDLHLRGYQSFGARFAIIQKKTLLGDDMGLGKT
VQALSAAAHLAATEKDFRTLVVVPASVIVNWTRECKRFLNLPVFIAHGDNKQDAINAWSNTNGIAICTYDGVRTMDIPAP
GLVIADEAHLIKNPSTKRTQALRKLIDAAPYTLLMTGTPLENKVEEFVNLVRYIQPELITRGMSKMQAENFRERIAPAYL
RRNQADVLDELPERTDSIDWIDLTPEDRSAYDDQVRQGSWMGMRRSAMLSPTPRLTSAKMQRILELFEEAEEHGRKALIF
TYFLDVLDELEKHLGERVIGRISGDVPATKRQLLVDALSHSKPGSALIAQITAGGVGLNIQSASLCIICEPQVKPTIEQQ
AVARVHRMGQTATVQVHRLIGDETADERMLEILAGKTHVFDVYARLSETAEIPDAVDITESQLAARVIDEERARLGLTES
TGPKDEETALS

Specific function: Transcription Regulator That Activates Transcription By Stimulating RNA Polymerase (Rnap) Recycling In Case Of Stress Conditions Such As Supercoiled DNA Or High Salt Concentrations. Probably Acts By Releasing The Rnap, When It Is Trapped Or Immobilized On

COG id: COG0553

COG function: function code KL; Superfamily II DNA/RNA helicases, SNF2 family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SWIM-type zinc finger [H]

Homologues:

Organism=Homo sapiens, GI148612870, Length=453, Percent_Identity=27.5938189845475, Blast_Score=146, Evalue=8e-35,
Organism=Homo sapiens, GI21071058, Length=457, Percent_Identity=27.7899343544858, Blast_Score=133, Evalue=7e-31,
Organism=Homo sapiens, GI187761314, Length=450, Percent_Identity=28.4444444444444, Blast_Score=132, Evalue=1e-30,
Organism=Homo sapiens, GI21071060, Length=450, Percent_Identity=28.4444444444444, Blast_Score=132, Evalue=1e-30,
Organism=Homo sapiens, GI54112403, Length=473, Percent_Identity=26.6384778012685, Blast_Score=132, Evalue=1e-30,
Organism=Homo sapiens, GI95147342, Length=470, Percent_Identity=25.7446808510638, Blast_Score=130, Evalue=5e-30,
Organism=Homo sapiens, GI29244924, Length=466, Percent_Identity=25.7510729613734, Blast_Score=128, Evalue=2e-29,
Organism=Homo sapiens, GI164419749, Length=451, Percent_Identity=27.7161862527716, Blast_Score=127, Evalue=6e-29,
Organism=Homo sapiens, GI114326455, Length=484, Percent_Identity=25.2066115702479, Blast_Score=127, Evalue=6e-29,
Organism=Homo sapiens, GI282165704, Length=484, Percent_Identity=25.2066115702479, Blast_Score=126, Evalue=8e-29,
Organism=Homo sapiens, GI21071044, Length=463, Percent_Identity=26.9978401727862, Blast_Score=122, Evalue=2e-27,
Organism=Homo sapiens, GI51599156, Length=475, Percent_Identity=26.3157894736842, Blast_Score=117, Evalue=4e-26,
Organism=Homo sapiens, GI68299795, Length=469, Percent_Identity=25.7995735607676, Blast_Score=112, Evalue=2e-24,
Organism=Homo sapiens, GI118421089, Length=473, Percent_Identity=25.7928118393235, Blast_Score=110, Evalue=5e-24,
Organism=Homo sapiens, GI58331268, Length=485, Percent_Identity=25.7731958762887, Blast_Score=108, Evalue=3e-23,
Organism=Homo sapiens, GI190358534, Length=259, Percent_Identity=30.1158301158301, Blast_Score=97, Evalue=7e-20,
Organism=Homo sapiens, GI190358536, Length=259, Percent_Identity=30.1158301158301, Blast_Score=97, Evalue=7e-20,
Organism=Homo sapiens, GI190358532, Length=259, Percent_Identity=30.1158301158301, Blast_Score=97, Evalue=7e-20,
Organism=Homo sapiens, GI62860046, Length=441, Percent_Identity=25.1700680272109, Blast_Score=97, Evalue=9e-20,
Organism=Homo sapiens, GI146219843, Length=306, Percent_Identity=29.0849673202614, Blast_Score=94, Evalue=4e-19,
Organism=Homo sapiens, GI58219008, Length=281, Percent_Identity=26.3345195729537, Blast_Score=87, Evalue=7e-17,
Organism=Homo sapiens, GI27477070, Length=275, Percent_Identity=28.7272727272727, Blast_Score=79, Evalue=2e-14,
Organism=Homo sapiens, GI38708321, Length=260, Percent_Identity=26.1538461538462, Blast_Score=72, Evalue=2e-12,
Organism=Homo sapiens, GI6912622, Length=191, Percent_Identity=28.2722513089005, Blast_Score=72, Evalue=2e-12,
Organism=Homo sapiens, GI40807471, Length=124, Percent_Identity=29.0322580645161, Blast_Score=69, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI25148958, Length=443, Percent_Identity=29.1196388261851, Blast_Score=144, Evalue=2e-34,
Organism=Caenorhabditis elegans, GI25148960, Length=443, Percent_Identity=29.1196388261851, Blast_Score=144, Evalue=2e-34,
Organism=Caenorhabditis elegans, GI17552194, Length=443, Percent_Identity=29.1196388261851, Blast_Score=144, Evalue=2e-34,
Organism=Caenorhabditis elegans, GI71995707, Length=461, Percent_Identity=25.8134490238612, Blast_Score=130, Evalue=3e-30,
Organism=Caenorhabditis elegans, GI25144179, Length=513, Percent_Identity=27.0955165692008, Blast_Score=130, Evalue=5e-30,
Organism=Caenorhabditis elegans, GI32563629, Length=451, Percent_Identity=26.8292682926829, Blast_Score=123, Evalue=3e-28,
Organism=Caenorhabditis elegans, GI71991518, Length=494, Percent_Identity=25.9109311740891, Blast_Score=111, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI115534248, Length=276, Percent_Identity=31.1594202898551, Blast_Score=104, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI193203249, Length=147, Percent_Identity=35.3741496598639, Blast_Score=89, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI71988744, Length=289, Percent_Identity=25.6055363321799, Blast_Score=87, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17540630, Length=147, Percent_Identity=31.2925170068027, Blast_Score=79, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17508659, Length=205, Percent_Identity=27.8048780487805, Blast_Score=75, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI193203140, Length=142, Percent_Identity=34.5070422535211, Blast_Score=73, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17561718, Length=96, Percent_Identity=38.5416666666667, Blast_Score=72, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17538806, Length=144, Percent_Identity=32.6388888888889, Blast_Score=70, Evalue=7e-12,
Organism=Saccharomyces cerevisiae, GI6324879, Length=454, Percent_Identity=27.3127753303965, Blast_Score=120, Evalue=1e-27,
Organism=Saccharomyces cerevisiae, GI6319722, Length=450, Percent_Identity=26.8888888888889, Blast_Score=118, Evalue=5e-27,
Organism=Saccharomyces cerevisiae, GI6321012, Length=440, Percent_Identity=25.6818181818182, Blast_Score=113, Evalue=1e-25,
Organism=Saccharomyces cerevisiae, GI6319547, Length=464, Percent_Identity=22.8448275862069, Blast_Score=102, Evalue=4e-22,
Organism=Saccharomyces cerevisiae, GI6319300, Length=270, Percent_Identity=27.037037037037, Blast_Score=97, Evalue=1e-20,
Organism=Saccharomyces cerevisiae, GI6320541, Length=271, Percent_Identity=28.7822878228782, Blast_Score=96, Evalue=3e-20,
Organism=Saccharomyces cerevisiae, GI6321153, Length=189, Percent_Identity=30.1587301587302, Blast_Score=76, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6325175, Length=276, Percent_Identity=26.0869565217391, Blast_Score=75, Evalue=5e-14,
Organism=Saccharomyces cerevisiae, GI6321289, Length=167, Percent_Identity=34.7305389221557, Blast_Score=75, Evalue=6e-14,
Organism=Saccharomyces cerevisiae, GI6323060, Length=198, Percent_Identity=30.3030303030303, Blast_Score=75, Evalue=6e-14,
Organism=Saccharomyces cerevisiae, GI6319590, Length=149, Percent_Identity=26.1744966442953, Blast_Score=67, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6321275, Length=209, Percent_Identity=26.7942583732057, Blast_Score=66, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6322065, Length=164, Percent_Identity=28.6585365853659, Blast_Score=64, Evalue=8e-11,
Organism=Drosophila melanogaster, GI17986031, Length=467, Percent_Identity=26.1241970021413, Blast_Score=123, Evalue=5e-28,
Organism=Drosophila melanogaster, GI221330583, Length=467, Percent_Identity=26.1241970021413, Blast_Score=122, Evalue=8e-28,
Organism=Drosophila melanogaster, GI24653134, Length=454, Percent_Identity=26.6519823788546, Blast_Score=122, Evalue=2e-27,
Organism=Drosophila melanogaster, GI24653132, Length=454, Percent_Identity=26.6519823788546, Blast_Score=122, Evalue=2e-27,
Organism=Drosophila melanogaster, GI17737463, Length=454, Percent_Identity=26.6519823788546, Blast_Score=122, Evalue=2e-27,
Organism=Drosophila melanogaster, GI24581780, Length=434, Percent_Identity=24.6543778801843, Blast_Score=100, Evalue=3e-21,
Organism=Drosophila melanogaster, GI24664914, Length=440, Percent_Identity=24.0909090909091, Blast_Score=99, Evalue=2e-20,
Organism=Drosophila melanogaster, GI17985967, Length=440, Percent_Identity=24.0909090909091, Blast_Score=99, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24664907, Length=440, Percent_Identity=24.0909090909091, Blast_Score=99, Evalue=2e-20,
Organism=Drosophila melanogaster, GI28574896, Length=440, Percent_Identity=24.0909090909091, Blast_Score=99, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24656966, Length=256, Percent_Identity=28.125, Blast_Score=92, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24656962, Length=256, Percent_Identity=28.125, Blast_Score=92, Evalue=1e-18,
Organism=Drosophila melanogaster, GI28573600, Length=256, Percent_Identity=28.125, Blast_Score=91, Evalue=3e-18,
Organism=Drosophila melanogaster, GI85724912, Length=270, Percent_Identity=25.5555555555556, Blast_Score=83, Evalue=1e-15,
Organism=Drosophila melanogaster, GI85724914, Length=270, Percent_Identity=25.5555555555556, Blast_Score=83, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24583161, Length=270, Percent_Identity=25.5555555555556, Blast_Score=82, Evalue=1e-15,
Organism=Drosophila melanogaster, GI281361889, Length=268, Percent_Identity=25.3731343283582, Blast_Score=80, Evalue=5e-15,
Organism=Drosophila melanogaster, GI21356675, Length=184, Percent_Identity=27.1739130434783, Blast_Score=78, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24650076, Length=184, Percent_Identity=27.1739130434783, Blast_Score=78, Evalue=3e-14,
Organism=Drosophila melanogaster, GI17136368, Length=211, Percent_Identity=28.436018957346, Blast_Score=74, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24648168, Length=136, Percent_Identity=29.4117647058824, Blast_Score=69, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR001650
- InterPro:   IPR014021
- InterPro:   IPR000330
- InterPro:   IPR007527 [H]

Pfam domain/function: PF00271 Helicase_C; PF00176 SNF2_N; PF04434 SWIM [H]

EC number: 3.6.1.- [C]

Molecular weight: Translated: 98973; Mature: 98842

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAESNAMDRAQISALLDRAQHTINLAEQANNVLRLLKTPGTATVGDNGTLGTDTYLIPSR
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCC
NITWPDNLYVNVFLDGMNAEATLTDYVASVASIPRLCQIINEGQGGMFRRLFNPTKVQAG
CCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCC
DQAVFDLMVKLDEISSTTHEVSRMLEGVHAARTRQQQGVALFPGIHGVGERYIERAQQVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHH
ASALGIAGFGAEPWDGHTLAQARRVVQRYAQDPNSEYRLKSEAEKHLTSINELRVQILLE
HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QLPVDALRMATDHRLRFGSLDSIHVATVADVLKTHTSILTTVQGIGAQTAGRMKAAAETL
HCCHHHHHHHHHCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
KQEALRRQNTSIGDEPTQPAMRLINVLARFDQTETITPEERARRTRVIDYVEHIPPSLDP
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
YIVINPATPEFNNFTDDLRWIDANPNLFHPQTITTPPADIWDDYISRPAHYQGLLATLLG
EEEEECCCCCCCCCCCCCEEEECCCCEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHC
RDIEGADELLDATTLQKIRDLTLDKTHLTDLHLRGYQSFGARFAIIQKKTLLGDDMGLGK
CCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHCCEEEEEEHHHHCCCCCCCCH
TVQALSAAAHLAATEKDFRTLVVVPASVIVNWTRECKRFLNLPVFIAHGDNKQDAINAWS
HHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCC
NTNGIAICTYDGVRTMDIPAPGLVIADEAHLIKNPSTKRTQALRKLIDAAPYTLLMTGTP
CCCCEEEEEECCEEEECCCCCCEEEECCCHHHCCCCHHHHHHHHHHHHCCCCEEEEECCC
LENKVEEFVNLVRYIQPELITRGMSKMQAENFRERIAPAYLRRNQADVLDELPERTDSID
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCC
WIDLTPEDRSAYDDQVRQGSWMGMRRSAMLSPTPRLTSAKMQRILELFEEAEEHGRKALI
EEECCCCCCHHHHHHHHCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEH
FTYFLDVLDELEKHLGERVIGRISGDVPATKRQLLVDALSHSKPGSALIAQITAGGVGLN
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEE
IQSASLCIICEPQVKPTIEQQAVARVHRMGQTATVQVHRLIGDETADERMLEILAGKTHV
ECCCCEEEEECCCCCCCHHHHHHHHHHHCCCCHHEEHHHHHCCCCHHHHHHHHHHCCHHH
FDVYARLSETAEIPDAVDITESQLAARVIDEERARLGLTESTGPKDEETALS
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCC
>Mature Secondary Structure 
AESNAMDRAQISALLDRAQHTINLAEQANNVLRLLKTPGTATVGDNGTLGTDTYLIPSR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCC
NITWPDNLYVNVFLDGMNAEATLTDYVASVASIPRLCQIINEGQGGMFRRLFNPTKVQAG
CCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCC
DQAVFDLMVKLDEISSTTHEVSRMLEGVHAARTRQQQGVALFPGIHGVGERYIERAQQVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHH
ASALGIAGFGAEPWDGHTLAQARRVVQRYAQDPNSEYRLKSEAEKHLTSINELRVQILLE
HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QLPVDALRMATDHRLRFGSLDSIHVATVADVLKTHTSILTTVQGIGAQTAGRMKAAAETL
HCCHHHHHHHHHCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
KQEALRRQNTSIGDEPTQPAMRLINVLARFDQTETITPEERARRTRVIDYVEHIPPSLDP
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
YIVINPATPEFNNFTDDLRWIDANPNLFHPQTITTPPADIWDDYISRPAHYQGLLATLLG
EEEEECCCCCCCCCCCCCEEEECCCCEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHC
RDIEGADELLDATTLQKIRDLTLDKTHLTDLHLRGYQSFGARFAIIQKKTLLGDDMGLGK
CCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHCCEEEEEEHHHHCCCCCCCCH
TVQALSAAAHLAATEKDFRTLVVVPASVIVNWTRECKRFLNLPVFIAHGDNKQDAINAWS
HHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCC
NTNGIAICTYDGVRTMDIPAPGLVIADEAHLIKNPSTKRTQALRKLIDAAPYTLLMTGTP
CCCCEEEEEECCEEEECCCCCCEEEECCCHHHCCCCHHHHHHHHHHHHCCCCEEEEECCC
LENKVEEFVNLVRYIQPELITRGMSKMQAENFRERIAPAYLRRNQADVLDELPERTDSID
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCC
WIDLTPEDRSAYDDQVRQGSWMGMRRSAMLSPTPRLTSAKMQRILELFEEAEEHGRKALI
EEECCCCCCHHHHHHHHCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEH
FTYFLDVLDELEKHLGERVIGRISGDVPATKRQLLVDALSHSKPGSALIAQITAGGVGLN
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEE
IQSASLCIICEPQVKPTIEQQAVARVHRMGQTATVQVHRLIGDETADERMLEILAGKTHV
ECCCCEEEEECCCCCCCHHHHHHHHHHHCCCCHHEEHHHHHCCCCHHHHHHHHHHCCHHH
FDVYARLSETAEIPDAVDITESQLAARVIDEERARLGLTESTGPKDEETALS
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8948633 [H]