Click here to switch to the map view.

The map label for this gene is rbsC [H]

Identifier: 62390140

GI number: 62390140

Start: 1320473

End: 1321447

Strand: Direct

Name: rbsC [H]

Synonym: cg1412

Alternate gene names: 62390140

Gene position: 1320473-1321447 (Clockwise)

Preceding gene: 62390139

Following gene: 62390141

Centisome position: 40.23

GC content: 54.15

Gene sequence:

>975_bases
TTGAGCACCGCCGTAGTTTCACAGAAGAAGTCCACAACGGCATCCAAAATTGGACATTGGATGCTCAATAACGGTGCGTT
GGTGGGGCTGATTGCACTGTGTGTTGGACTTTTTATTGCAACACCCCACTTTCTCACCATTCCTAACCTGATCAACATCG
GTATCCAATCGGCGACGGTGGCGATCCTGGCGTTCGGCATGACCTTCGTCATCGTTACCGCAGGCATTGATTTGTCTGTG
GGATCAGTGGCTGCGTTGGGTGCGATGACCTCGGCGTATTTCTTCGCGGAAGTTGGTTTGCCGGGCTGGATCACGCTGCT
GATTGGCCTGTTCATCGGATTGTTGGCGGGTGCGATCTCTGGCATTTCTATTGCTTATGGCAAGTTGCCTGCGTTTATTG
CCACCTTGGCCATGATGTCGATCGCCAGGGGAATCACCTTGGTCATTTCCCAAGGCTCACCAATTCCCAGTGCACCAGCT
GTGAACGCTTTGGGGCGCACCTACTTTGGCATCCCGATGCCGATTCTGATGATGGCACTGGCTGGCATTGTGTGTTGGTT
TATTTTGAGCCGCACCGTGCTGGGACGGTCCATGTACGCCATTGGCGGAAACATGGAAGCAGCCCGACTATCTGGTCTGC
CAGTGAAGAAAATCCTGGTCATGGTCTATGCACTGGCTGGTGTGTATGCAGCACTTGCGGGTCTGGTCATGACGGGACGC
TTGTCGTCCGCGCAGCCGCAGGCAGGCGTGGGATACGAACTCGATGCGATTGCCGCCGTGGTCATTGGTGGTGCGTCACT
TGCTGGCGGAACCGGAAAAGCAACGGGCACTTTGATTGGTGCCATCTTGTTGGCCGTGATCCGCAATGGCTTGAACATTT
TGAACGTGTCCTCGTTCTGGCAGCAGATTGTCATCGGTTGTGTCATCGCGCTTGCGGTGGGCTTCGATGTCATCCGAAAC
AAAACCTCTAAGTAA

Upstream 100 bases:

>100_bases
GAACAACCCAGGACGATGTCATGGCTCTAGCTGTTTCCCAGGTGGATGATTCCATCACCGAGGAAGCTGCTGCAGAAATC
GAAAACACAAAGGAGGACCG

Downstream 100 bases:

>100_bases
TTCCTGAAAGGAAATTTTCACATGTACGCTCGTAAACTTATTGCTCTGTCCGCTTCTGTCGTTTTGGCTTTCAGCTTGTC
TGCTTGCAACCGTGAATCTT

Product: ribose/xylose/arabinose/galactoside ABC-type transporter permease

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 323

Protein sequence:

>324_residues
MSTAVVSQKKSTTASKIGHWMLNNGALVGLIALCVGLFIATPHFLTIPNLINIGIQSATVAILAFGMTFVIVTAGIDLSV
GSVAALGAMTSAYFFAEVGLPGWITLLIGLFIGLLAGAISGISIAYGKLPAFIATLAMMSIARGITLVISQGSPIPSAPA
VNALGRTYFGIPMPILMMALAGIVCWFILSRTVLGRSMYAIGGNMEAARLSGLPVKKILVMVYALAGVYAALAGLVMTGR
LSSAQPQAGVGYELDAIAAVVIGGASLAGGTGKATGTLIGAILLAVIRNGLNILNVSSFWQQIVIGCVIALAVGFDVIRN
KTSK

Sequences:

>Translated_324_residues
MSTAVVSQKKSTTASKIGHWMLNNGALVGLIALCVGLFIATPHFLTIPNLINIGIQSATVAILAFGMTFVIVTAGIDLSV
GSVAALGAMTSAYFFAEVGLPGWITLLIGLFIGLLAGAISGISIAYGKLPAFIATLAMMSIARGITLVISQGSPIPSAPA
VNALGRTYFGIPMPILMMALAGIVCWFILSRTVLGRSMYAIGGNMEAARLSGLPVKKILVMVYALAGVYAALAGLVMTGR
LSSAQPQAGVGYELDAIAAVVIGGASLAGGTGKATGTLIGAILLAVIRNGLNILNVSSFWQQIVIGCVIALAVGFDVIRN
KTSK
>Mature_323_residues
STAVVSQKKSTTASKIGHWMLNNGALVGLIALCVGLFIATPHFLTIPNLINIGIQSATVAILAFGMTFVIVTAGIDLSVG
SVAALGAMTSAYFFAEVGLPGWITLLIGLFIGLLAGAISGISIAYGKLPAFIATLAMMSIARGITLVISQGSPIPSAPAV
NALGRTYFGIPMPILMMALAGIVCWFILSRTVLGRSMYAIGGNMEAARLSGLPVKKILVMVYALAGVYAALAGLVMTGRL
SSAQPQAGVGYELDAIAAVVIGGASLAGGTGKATGTLIGAILLAVIRNGLNILNVSSFWQQIVIGCVIALAVGFDVIRNK
TSK

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=324, Percent_Identity=46.2962962962963, Blast_Score=242, Evalue=2e-65,
Organism=Escherichia coli, GI1790524, Length=296, Percent_Identity=38.5135135135135, Blast_Score=177, Evalue=7e-46,
Organism=Escherichia coli, GI145693152, Length=310, Percent_Identity=36.1290322580645, Blast_Score=168, Evalue=4e-43,
Organism=Escherichia coli, GI1788896, Length=320, Percent_Identity=33.75, Blast_Score=166, Evalue=3e-42,
Organism=Escherichia coli, GI1789992, Length=343, Percent_Identity=37.6093294460641, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI87082395, Length=296, Percent_Identity=37.5, Blast_Score=144, Evalue=9e-36,
Organism=Escherichia coli, GI145693214, Length=266, Percent_Identity=37.218045112782, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1788471, Length=327, Percent_Identity=35.7798165137615, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1787793, Length=287, Percent_Identity=33.1010452961672, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1787794, Length=269, Percent_Identity=29.368029739777, Blast_Score=86, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33054; Mature: 32923

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTAVVSQKKSTTASKIGHWMLNNGALVGLIALCVGLFIATPHFLTIPNLINIGIQSATV
CCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEECCHHHHHCHHHHHH
AILAFGMTFVIVTAGIDLSVGSVAALGAMTSAYFFAEVGLPGWITLLIGLFIGLLAGAIS
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
GISIAYGKLPAFIATLAMMSIARGITLVISQGSPIPSAPAVNALGRTYFGIPMPILMMAL
HHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHCCCCHHHHHHHH
AGIVCWFILSRTVLGRSMYAIGGNMEAARLSGLPVKKILVMVYALAGVYAALAGLVMTGR
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
LSSAQPQAGVGYELDAIAAVVIGGASLAGGTGKATGTLIGAILLAVIRNGLNILNVSSFW
CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEHHHHH
QQIVIGCVIALAVGFDVIRNKTSK
HHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
STAVVSQKKSTTASKIGHWMLNNGALVGLIALCVGLFIATPHFLTIPNLINIGIQSATV
CCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEECCHHHHHCHHHHHH
AILAFGMTFVIVTAGIDLSVGSVAALGAMTSAYFFAEVGLPGWITLLIGLFIGLLAGAIS
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
GISIAYGKLPAFIATLAMMSIARGITLVISQGSPIPSAPAVNALGRTYFGIPMPILMMAL
HHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHCCCCHHHHHHHH
AGIVCWFILSRTVLGRSMYAIGGNMEAARLSGLPVKKILVMVYALAGVYAALAGLVMTGR
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
LSSAQPQAGVGYELDAIAAVVIGGASLAGGTGKATGTLIGAILLAVIRNGLNILNVSSFW
CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEHHHHH
QQIVIGCVIALAVGFDVIRNKTSK
HHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]