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The map label for this gene is ydhC [H]

Identifier: 62389551

GI number: 62389551

Start: 677688

End: 678410

Strand: Reverse

Name: ydhC [H]

Synonym: cg0764

Alternate gene names: 62389551

Gene position: 678410-677688 (Counterclockwise)

Preceding gene: 62389552

Following gene: 62389550

Centisome position: 20.67

GC content: 50.62

Gene sequence:

>723_bases
ATGGTCCAAAAAGATGCCCAGGCCTCCCCTGCTACGAGAAAAGCAGATCAGGTATACACACAGATTCGTCGTGAAATCGA
AGATGGAACCTTAAATCCTGGGCAACGAATGTCGGAAGTGTGGCTGGTTGAACACACCGGCGCTTCGAGAACCCCAGTCC
GGGATGCTCTCCGCCGGTTAGCCGCAGACGAGTTGATCATTTTGGAGCCACGTCAGGCGCCTATGGTGTCGCCACTTTCG
CTTCGCCACATTAAGGATCTGTTTGAGTTCCGCAGGATCGTCGAGGTCGCAGCGCTTGAGGAAATCTCTGTTGGAGCGAG
TAAATCACCGCGTATCTTTGGTGAGTTTTCTACGTTGGCGGCAGATTTTCGAGAGCTGGAAAACTCTGCAGACGATGCAG
ATTTCACCGCCGATTTTAGGCGATTGACCAGTAAGTTTGATGATCTTGTTGCAGCAAATACTCACAACCAATTCCTTGGA
CGCAGCATCTTAAGTTTAAAACCGCACACCACGAGGCTGCGGATCATTGCGCATTCCGATCATGCGCGTCTGCGCCAATC
GGTTCAGGAACATATTGAAATGTGTGAAGCTGTGGCCTCAGGAGATTTAAGGTCGGCAGGCGCTGCGTGTAGACAGCACC
TGATCCATGTAGAAAAGAGCATTTTGACCGCATTGATTAATGCTGATTCTACGGGCTCGCAGGGCATTGATATTAGGTCT
TAG

Upstream 100 bases:

>100_bases
AAGCAAAAAATTGCTTGTCGACGTCTCCCCCAACCTAGCATCCACTTTCTGCAACCCAGTGTCACAAATAGTCTAAATTT
CGGTGTACTAAGGTGTTGTC

Downstream 100 bases:

>100_bases
AACCAGCGTGCACTGATGGCGATTAAAGGGGGTTGCGCCTATACCTATTGCTGGTATACATTTCGGTATACCTAAACCGA
ATTGAGGGATTCATGCCAGA

Product: GNTR-family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MVQKDAQASPATRKADQVYTQIRREIEDGTLNPGQRMSEVWLVEHTGASRTPVRDALRRLAADELIILEPRQAPMVSPLS
LRHIKDLFEFRRIVEVAALEEISVGASKSPRIFGEFSTLAADFRELENSADDADFTADFRRLTSKFDDLVAANTHNQFLG
RSILSLKPHTTRLRIIAHSDHARLRQSVQEHIEMCEAVASGDLRSAGAACRQHLIHVEKSILTALINADSTGSQGIDIRS

Sequences:

>Translated_240_residues
MVQKDAQASPATRKADQVYTQIRREIEDGTLNPGQRMSEVWLVEHTGASRTPVRDALRRLAADELIILEPRQAPMVSPLS
LRHIKDLFEFRRIVEVAALEEISVGASKSPRIFGEFSTLAADFRELENSADDADFTADFRRLTSKFDDLVAANTHNQFLG
RSILSLKPHTTRLRIIAHSDHARLRQSVQEHIEMCEAVASGDLRSAGAACRQHLIHVEKSILTALINADSTGSQGIDIRS
>Mature_240_residues
MVQKDAQASPATRKADQVYTQIRREIEDGTLNPGQRMSEVWLVEHTGASRTPVRDALRRLAADELIILEPRQAPMVSPLS
LRHIKDLFEFRRIVEVAALEEISVGASKSPRIFGEFSTLAADFRELENSADDADFTADFRRLTSKFDDLVAANTHNQFLG
RSILSLKPHTTRLRIIAHSDHARLRQSVQEHIEMCEAVASGDLRSAGAACRQHLIHVEKSILTALINADSTGSQGIDIRS

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26731; Mature: 26731

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVQKDAQASPATRKADQVYTQIRREIEDGTLNPGQRMSEVWLVEHTGASRTPVRDALRRL
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHEEEEECCCCCCCCHHHHHHHH
AADELIILEPRQAPMVSPLSLRHIKDLFEFRRIVEVAALEEISVGASKSPRIFGEFSTLA
CCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
ADFRELENSADDADFTADFRRLTSKFDDLVAANTHNQFLGRSILSLKPHTTRLRIIAHSD
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEEEECC
HARLRQSVQEHIEMCEAVASGDLRSAGAACRQHLIHVEKSILTALINADSTGSQGIDIRS
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MVQKDAQASPATRKADQVYTQIRREIEDGTLNPGQRMSEVWLVEHTGASRTPVRDALRRL
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHEEEEECCCCCCCCHHHHHHHH
AADELIILEPRQAPMVSPLSLRHIKDLFEFRRIVEVAALEEISVGASKSPRIFGEFSTLA
CCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
ADFRELENSADDADFTADFRRLTSKFDDLVAANTHNQFLGRSILSLKPHTTRLRIIAHSD
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEEEECC
HARLRQSVQEHIEMCEAVASGDLRSAGAACRQHLIHVEKSILTALINADSTGSQGIDIRS
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]