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The map label for this gene is rpe [H]

Identifier: 62185162

GI number: 62185162

Start: 616790

End: 617485

Strand: Direct

Name: rpe [H]

Synonym: CAB537

Alternate gene names: 62185162

Gene position: 616790-617485 (Clockwise)

Preceding gene: 62185156

Following gene: 62185163

Centisome position: 53.9

GC content: 40.8

Gene sequence:

>696_bases
GTGAATAACAAACAACGTCCGAAGACATTAATCGCCCCCTCAATTATGGGAGGAGACCTTGCTTGCATAGGTGCAGAGGC
AAAAAGAATAGAGGAATCGGGTGCAGACCTTATTCATATCGATGTTATGGATGGTCATTTCGTACCCAATCTCACTTTTG
GTCCAGGAGTCATCGCAGCAATCAATAGATCCACAGACATCTTTTTAGAAGTGCATGCTATGATCTACACGCCGTTTGAC
TTTGTAGAAGAGTTTGTCAAATCCGGTGCGGATCGTATTATCGTACATTTCGAAGCCTCTGAAGATCTTAAAGAGTTATT
GTCTTATATTAAAAAATGTGGAATACAAGCGGGGTTAGCTTTCTCTCCAGAAACCTCCATAGAATTTATACCTCCCTTCT
TACCTTTTTGTGATGTCATACTGTTAATGTCCGTGCACCCAGGATTTTGTGGTCAGGGTTTTATTCCGGATATTCCAGAC
AAAATTCGCTTTACAAAACAGGCAATAAAAACCATGGGGTTAGAAGGTTCTTGCCTAATTGAGGTTGATGGGGGAATTAA
CGAAACTTCCGCAAAAATATGTCGTGAAGCAGGTGCGGATATTCTCGTGGCTGCATCATACATATTCGAAAAGAACGAAC
AGACTATGGAAGAAAAAGTTTTGCTACTTCGAGGAGAAAATCATGGTATTAAGTAG

Upstream 100 bases:

>100_bases
TGTGGTTATCCTGTCCTACAGGATATGGTGAGATAAATAATTTGCTCATGACACCTTAAGAAGCTTCTTTTAATTTTGAT
CTGTTCGCAATAGGCTATAG

Downstream 100 bases:

>100_bases
CCAGCTCTCTGTGGGAATGTTTATTTCCACAAAAGATGGTCTTTATAAAGTCGTGGCGGTTTCTAAAGTCACAGGCAATA
AAGGGGAATCTTTTATCAAA

Product: ribulose-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MNNKQRPKTLIAPSIMGGDLACIGAEAKRIEESGADLIHIDVMDGHFVPNLTFGPGVIAAINRSTDIFLEVHAMIYTPFD
FVEEFVKSGADRIIVHFEASEDLKELLSYIKKCGIQAGLAFSPETSIEFIPPFLPFCDVILLMSVHPGFCGQGFIPDIPD
KIRFTKQAIKTMGLEGSCLIEVDGGINETSAKICREAGADILVAASYIFEKNEQTMEEKVLLLRGENHGIK

Sequences:

>Translated_231_residues
MNNKQRPKTLIAPSIMGGDLACIGAEAKRIEESGADLIHIDVMDGHFVPNLTFGPGVIAAINRSTDIFLEVHAMIYTPFD
FVEEFVKSGADRIIVHFEASEDLKELLSYIKKCGIQAGLAFSPETSIEFIPPFLPFCDVILLMSVHPGFCGQGFIPDIPD
KIRFTKQAIKTMGLEGSCLIEVDGGINETSAKICREAGADILVAASYIFEKNEQTMEEKVLLLRGENHGIK
>Mature_231_residues
MNNKQRPKTLIAPSIMGGDLACIGAEAKRIEESGADLIHIDVMDGHFVPNLTFGPGVIAAINRSTDIFLEVHAMIYTPFD
FVEEFVKSGADRIIVHFEASEDLKELLSYIKKCGIQAGLAFSPETSIEFIPPFLPFCDVILLMSVHPGFCGQGFIPDIPD
KIRFTKQAIKTMGLEGSCLIEVDGGINETSAKICREAGADILVAASYIFEKNEQTMEEKVLLLRGENHGIK

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=205, Percent_Identity=38.5365853658537, Blast_Score=159, Evalue=2e-39,
Organism=Homo sapiens, GI219879828, Length=205, Percent_Identity=36.0975609756098, Blast_Score=149, Evalue=2e-36,
Organism=Homo sapiens, GI24307923, Length=161, Percent_Identity=29.8136645962733, Blast_Score=88, Evalue=8e-18,
Organism=Escherichia coli, GI1789788, Length=205, Percent_Identity=41.4634146341463, Blast_Score=153, Evalue=1e-38,
Organism=Escherichia coli, GI1790523, Length=217, Percent_Identity=33.1797235023041, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1790754, Length=178, Percent_Identity=28.6516853932584, Blast_Score=78, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17552948, Length=214, Percent_Identity=35.981308411215, Blast_Score=150, Evalue=5e-37,
Organism=Saccharomyces cerevisiae, GI6322341, Length=215, Percent_Identity=35.8139534883721, Blast_Score=148, Evalue=6e-37,
Organism=Drosophila melanogaster, GI24586301, Length=206, Percent_Identity=34.4660194174757, Blast_Score=149, Evalue=2e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 25304; Mature: 25304

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1 ; PS01086 RIBUL_P_3_EPIMER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNKQRPKTLIAPSIMGGDLACIGAEAKRIEESGADLIHIDVMDGHFVPNLTFGPGVIAA
CCCCCCCCEEECCCCCCCCEEEECHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCEEEE
INRSTDIFLEVHAMIYTPFDFVEEFVKSGADRIIVHFEASEDLKELLSYIKKCGIQAGLA
ECCCCEEEEEEEEHEECCHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHCCCCCCCE
FSPETSIEFIPPFLPFCDVILLMSVHPGFCGQGFIPDIPDKIRFTKQAIKTMGLEGSCLI
ECCCCCCEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEE
EVDGGINETSAKICREAGADILVAASYIFEKNEQTMEEKVLLLRGENHGIK
EECCCCCHHHHHHHHHCCCCEEEEHHHHHHCCHHHHHHEEEEEECCCCCCC
>Mature Secondary Structure
MNNKQRPKTLIAPSIMGGDLACIGAEAKRIEESGADLIHIDVMDGHFVPNLTFGPGVIAA
CCCCCCCCEEECCCCCCCCEEEECHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCEEEE
INRSTDIFLEVHAMIYTPFDFVEEFVKSGADRIIVHFEASEDLKELLSYIKKCGIQAGLA
ECCCCEEEEEEEEHEECCHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHCCCCCCCE
FSPETSIEFIPPFLPFCDVILLMSVHPGFCGQGFIPDIPDKIRFTKQAIKTMGLEGSCLI
ECCCCCCEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEE
EVDGGINETSAKICREAGADILVAASYIFEKNEQTMEEKVLLLRGENHGIK
EECCCCCHHHHHHHHHCCCCEEEEHHHHHHCCHHHHHHEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9784136 [H]