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The map label for this gene is whiG [H]

Identifier: 62185044

GI number: 62185044

Start: 477744

End: 478517

Strand: Direct

Name: whiG [H]

Synonym: CAB415

Alternate gene names: 62185044

Gene position: 477744-478517 (Clockwise)

Preceding gene: 62185043

Following gene: 62185046

Centisome position: 41.75

GC content: 41.34

Gene sequence:

>774_bases
GTGAAAACACAAAATACGCAAAACATTTCTGAGATTTGGGAATTATATTGGCAGACTCAAGAAATCGAGTATCGAGATAC
TCTGATTGATTTTTACCTGCACTTAGTTAAGTGTGTGGCCCACCGCTTAATTTCCGGTATGCCTTCCCATGTAAAGACCG
AGGATCTGTATGCTTCCGGTGTTGAGGGTTTAGTTCGAGCTGTTGAACGTTTTAACCCGGAAAAGAGTCGTCGTTTTGAA
GGGTATGCTTTATTTTTAATTAAAGCAGCTATTATCGATGATTTAAGGAAGCAAGACTGGGTGCCAAGGAGCGTACATCA
AAAAGCAAATAAGCTTGCTGATGCTATGGATGCTCTGCGGCTGTCACTAGGAAGAGAGCCTACGGATGGTGATCTTTGTG
AGTATTTCCAAATTTCTCAACAAGAGCTTTCTGGCTGGTTTGCTTCAGCACGACCTGCGTTAATTATTTCTTTAAACGAG
GAAAGACCCTCGTTATCTGATGGTGAATCTGGTGTAGCTCTAGAAGAACGTATCGCTGATGAAAGAGCAGAAACAGGGTA
CGACATTGTTGATAAAAAGGAATTCTCTTCATTTTTAGCAAGTGCTATCGAGAGCCTAGAAGAGAAGGAAAGAAAGGTGA
TGGCTCTATACTACTATGAAGAGCTCGTTCTTAAGGAAATTGGAAAGATTCTAGGAGTTAGCGAATCACGAGTATCCCAG
ATTCATTCCAAAGCCCTTATCAAACTCCGAGCTGCTTTATCTGCTTTCCTTTAA

Upstream 100 bases:

>100_bases
GAAATTCATCTAATTAAAACAAATAAAATATTTTAATTGAGGTGTTGTTTAAAATATTTTTTTTATTTAATCTTAAAATA
ATTACTGAAAGAAAAAATTT

Downstream 100 bases:

>100_bases
GGAATTCTCTCTGCTTGTTGTTCCACAGTTAATCTGCTTGTTGTTCCACAGTCAATGTGAATGCTCATCATGCCAAGAGA
TAATAAGATCCCTCCAACAA

Product: RNA polymerase sigma factor sigma-28

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MKTQNTQNISEIWELYWQTQEIEYRDTLIDFYLHLVKCVAHRLISGMPSHVKTEDLYASGVEGLVRAVERFNPEKSRRFE
GYALFLIKAAIIDDLRKQDWVPRSVHQKANKLADAMDALRLSLGREPTDGDLCEYFQISQQELSGWFASARPALIISLNE
ERPSLSDGESGVALEERIADERAETGYDIVDKKEFSSFLASAIESLEEKERKVMALYYYEELVLKEIGKILGVSESRVSQ
IHSKALIKLRAALSAFL

Sequences:

>Translated_257_residues
MKTQNTQNISEIWELYWQTQEIEYRDTLIDFYLHLVKCVAHRLISGMPSHVKTEDLYASGVEGLVRAVERFNPEKSRRFE
GYALFLIKAAIIDDLRKQDWVPRSVHQKANKLADAMDALRLSLGREPTDGDLCEYFQISQQELSGWFASARPALIISLNE
ERPSLSDGESGVALEERIADERAETGYDIVDKKEFSSFLASAIESLEEKERKVMALYYYEELVLKEIGKILGVSESRVSQ
IHSKALIKLRAALSAFL
>Mature_257_residues
MKTQNTQNISEIWELYWQTQEIEYRDTLIDFYLHLVKCVAHRLISGMPSHVKTEDLYASGVEGLVRAVERFNPEKSRRFE
GYALFLIKAAIIDDLRKQDWVPRSVHQKANKLADAMDALRLSLGREPTDGDLCEYFQISQQELSGWFASARPALIISLNE
ERPSLSDGESGVALEERIADERAETGYDIVDKKEFSSFLASAIESLEEKERKVMALYYYEELVLKEIGKILGVSESRVSQ
IHSKALIKLRAALSAFL

Specific function: The level of this sigma factor may be crucial in determining the developmental fate of hyphae [H]

COG id: COG1191

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family [H]

Homologues:

Organism=Escherichia coli, GI1788231, Length=225, Percent_Identity=36.4444444444444, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1789098, Length=245, Percent_Identity=26.530612244898, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000943
- InterPro:   IPR007627
- InterPro:   IPR007624
- InterPro:   IPR007630
- InterPro:   IPR012845
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04539 Sigma70_r3; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 29353; Mature: 29353

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTQNTQNISEIWELYWQTQEIEYRDTLIDFYLHLVKCVAHRLISGMPSHVKTEDLYASG
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
VEGLVRAVERFNPEKSRRFEGYALFLIKAAIIDDLRKQDWVPRSVHQKANKLADAMDALR
HHHHHHHHHHCCCHHHHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
LSLGREPTDGDLCEYFQISQQELSGWFASARPALIISLNEERPSLSDGESGVALEERIAD
HHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHH
ERAETGYDIVDKKEFSSFLASAIESLEEKERKVMALYYYEELVLKEIGKILGVSESRVSQ
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
IHSKALIKLRAALSAFL
HHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MKTQNTQNISEIWELYWQTQEIEYRDTLIDFYLHLVKCVAHRLISGMPSHVKTEDLYASG
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
VEGLVRAVERFNPEKSRRFEGYALFLIKAAIIDDLRKQDWVPRSVHQKANKLADAMDALR
HHHHHHHHHHCCCHHHHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
LSLGREPTDGDLCEYFQISQQELSGWFASARPALIISLNEERPSLSDGESGVALEERIAD
HHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHH
ERAETGYDIVDKKEFSSFLASAIESLEEKERKVMALYYYEELVLKEIGKILGVSESRVSQ
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
IHSKALIKLRAALSAFL
HHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2507166; 12000953 [H]