| Definition | Chlamydophila abortus S26/3, complete genome. |
|---|---|
| Accession | NC_004552 |
| Length | 1,144,377 |
Click here to switch to the map view.
The map label for this gene is bfmBAB [H]
Identifier: 62184951
GI number: 62184951
Start: 371541
End: 373577
Strand: Direct
Name: bfmBAB [H]
Synonym: CAB319
Alternate gene names: 62184951
Gene position: 371541-373577 (Clockwise)
Preceding gene: 62184950
Following gene: 62184953
Centisome position: 32.47
GC content: 43.59
Gene sequence:
>2037_bases ATGGTAGCAATACAGCATGAATTAGGATCTTCGATTAAAGAAGTTCTGAAATTGGTCTGGAGTTTAAGATTTGCTGAAAA TAAGATGCTCCTTCTTTCCCGCCAGAGCGATTCTGGAGGAACTTTCCAGTTGTCTTGTGCTGGTCACGAGCTTGTTGGAG TGGTGGCCGGGAAAAGTCTCCTTCGAGGGAAGGATTGGTCTTTCCCATATTATAGGGATCAAGGATTCCCTGTAGGTCTA GGGTGTGATCTTTCTGAGATTTTTGCTTCCTTTCTTGGGCGATTAGCTCCGAACCATTCTTCTGGTAGGATGATGCCCTA CCACTATTCTCATAAAAAACTCCGTATTTGTTGCCAATCGAGTGTAGTAGGTTCCCAATTTCTTCAGGCAGCGGGGCGCG CATGGGCTGTAAAACATACCAAATCTAACGAAGTCGTTTACGTCTCTGGAGGGGATGGATCCACTTCTCAAGGTGAATTC CACGAGATGTTAAACTATGTTGCGTTGCATAAGTTGCCCTTAGTCACCGTCGTACAGAATAATGCTTGGGCGATCTCCGT GCCTTTTAAAGATCAGTGTTCTACAGATTTAGTGCGTTTAGGGGAGAGTTATCAAGGTCTCTCTGTTTATGAAGTTGATG GCGGGGATTACTTTAAGCTTGTAGATACTTTTTCTAAAGCTGTAGATCAAGCTAGACATACCTCGGTTCCTGCGTTAATT CTAGTCGATGTTATGCGTTTAGAGCCGCATAGCAACTCTGATAATCATGAGAAATATCGCAGTCGTGAAGATTTAGATCA TTGTAAGAGTCATGATCCTTTAATCCGGTTAGAACGGCTGATGATAGACGAATGCGGCATTTCACCTGCGGAGATTTTAG ACATAAAAGCAGAGGCTGAAGCCGAAGTCACTCGTGCTTGTGAAATCGCTGAGGGGATGCCCTTCCCCAGTAAAGGTTCT ACGAGCCATGATGTATTTTCTCCACATACAACTTCTTTAATTGATTATGAAAATTCTTTAGAAGCTCAGCGTTTGCGTGA CACTCAACCCAAAGTTATGCGAGATGCCATTACAGAAGCGCTCATTGAAGAAATGAGCCGAGATTCTGGTGTGGTTGTTT TCGGTGAAGACGTGGCTGGAGATAAAGGTGGGGTTTTTGGTGTCACTAGAAATCTTACAGATAGGTTTGGCAGCGAACGT TGTTTTAATACACCGTTAGCAGAGGCTACCATTATAGGCACAGCTATTGGTATGGCGATGGATGGGATCCATAAGCCTGT TGCTGAGATTCAGTTTGCTGATTATATCTGGCCCGGCATTAATCAATTATTTTCTGAAGCTTCGAGTATTTACTACCGTT CTGCTGGTGAGTGGGAAGTGCCTTTAGTTATTCGTGCTCCTTGTGGAGGTTACATACAAGGTGGCCCTTACCATTCACAA AGTATAGAAGCGTTCTTAGCCCATTGCCCGGGCATCAAGGTGGCTTATCCATCCAATGCCGCAGATGCAAAAGCCTTGTT AAAAGCGGCGATTCGCGATCCTAACCCTGTGGTTTTTTTAGAACACAAGGCGCTGTATCAACGACGTATTTTTAGTGCGT GTCCGGTATTTTCTTCGGATTATGTTTTGCCTTTTGGTAAAGCAGCGATCACGCAAGTCGGTTCAGATTTGACCATTGTT TCTTGGGGAATGTCTTTAGTTATGAGTATGGAAGTAGCTAAGGAATTGGCAGCTTTAGATATTTCTGCAGAGGTTATAGA TTTACGTACGATAGTACCTTGTGATTTTTCTACTGTTATAGAGTCTGTTAAGAAAACTAGTAAGTTACTTATAGCTCATG AAGCGTCGGAGTTTTGTGGGTTTGGTGCAGAGCTTGCTGCAACTGTAGCAGAGCAAGCATATGCATACCTAGATGCACCT ATTAGGCGTGTTGCGGGATTACATGCCCCAGTTCCTTACTCAAAAATACTGGAAAACGAAGTTCTCCCTCAGAAGGAGAA AATCTTTCAAGCAGCGAAGAGTTTAGCCGAGTTTTAA
Upstream 100 bases:
>100_bases AATTTCCCTAAGAAACGCAGTTTCTTGGATAAAATTAAGGGTTTTTTTTCTGACCTCACCGTATAGATAAGGATAGCACA GATCTATCCGAGGAGCACAT
Downstream 100 bases:
>100_bases TTGCGATTTTTATTAAATGCTTCCTGTAAGACCAATAATAGTGGAAGTTCTTTTAAGTGATTTACAGTAATTTGTACTAC TGTCCTTTTTTTGTTTTTTT
Product: putative oxidoreductase
Products: NA
Alternate protein names: Branched-chain alpha-keto acid dehydrogenase E1 component beta chain; BCKDH E1-beta [H]
Number of amino acids: Translated: 678; Mature: 678
Protein sequence:
>678_residues MVAIQHELGSSIKEVLKLVWSLRFAENKMLLLSRQSDSGGTFQLSCAGHELVGVVAGKSLLRGKDWSFPYYRDQGFPVGL GCDLSEIFASFLGRLAPNHSSGRMMPYHYSHKKLRICCQSSVVGSQFLQAAGRAWAVKHTKSNEVVYVSGGDGSTSQGEF HEMLNYVALHKLPLVTVVQNNAWAISVPFKDQCSTDLVRLGESYQGLSVYEVDGGDYFKLVDTFSKAVDQARHTSVPALI LVDVMRLEPHSNSDNHEKYRSREDLDHCKSHDPLIRLERLMIDECGISPAEILDIKAEAEAEVTRACEIAEGMPFPSKGS TSHDVFSPHTTSLIDYENSLEAQRLRDTQPKVMRDAITEALIEEMSRDSGVVVFGEDVAGDKGGVFGVTRNLTDRFGSER CFNTPLAEATIIGTAIGMAMDGIHKPVAEIQFADYIWPGINQLFSEASSIYYRSAGEWEVPLVIRAPCGGYIQGGPYHSQ SIEAFLAHCPGIKVAYPSNAADAKALLKAAIRDPNPVVFLEHKALYQRRIFSACPVFSSDYVLPFGKAAITQVGSDLTIV SWGMSLVMSMEVAKELAALDISAEVIDLRTIVPCDFSTVIESVKKTSKLLIAHEASEFCGFGAELAATVAEQAYAYLDAP IRRVAGLHAPVPYSKILENEVLPQKEKIFQAAKSLAEF
Sequences:
>Translated_678_residues MVAIQHELGSSIKEVLKLVWSLRFAENKMLLLSRQSDSGGTFQLSCAGHELVGVVAGKSLLRGKDWSFPYYRDQGFPVGL GCDLSEIFASFLGRLAPNHSSGRMMPYHYSHKKLRICCQSSVVGSQFLQAAGRAWAVKHTKSNEVVYVSGGDGSTSQGEF HEMLNYVALHKLPLVTVVQNNAWAISVPFKDQCSTDLVRLGESYQGLSVYEVDGGDYFKLVDTFSKAVDQARHTSVPALI LVDVMRLEPHSNSDNHEKYRSREDLDHCKSHDPLIRLERLMIDECGISPAEILDIKAEAEAEVTRACEIAEGMPFPSKGS TSHDVFSPHTTSLIDYENSLEAQRLRDTQPKVMRDAITEALIEEMSRDSGVVVFGEDVAGDKGGVFGVTRNLTDRFGSER CFNTPLAEATIIGTAIGMAMDGIHKPVAEIQFADYIWPGINQLFSEASSIYYRSAGEWEVPLVIRAPCGGYIQGGPYHSQ SIEAFLAHCPGIKVAYPSNAADAKALLKAAIRDPNPVVFLEHKALYQRRIFSACPVFSSDYVLPFGKAAITQVGSDLTIV SWGMSLVMSMEVAKELAALDISAEVIDLRTIVPCDFSTVIESVKKTSKLLIAHEASEFCGFGAELAATVAEQAYAYLDAP IRRVAGLHAPVPYSKILENEVLPQKEKIFQAAKSLAEF >Mature_678_residues MVAIQHELGSSIKEVLKLVWSLRFAENKMLLLSRQSDSGGTFQLSCAGHELVGVVAGKSLLRGKDWSFPYYRDQGFPVGL GCDLSEIFASFLGRLAPNHSSGRMMPYHYSHKKLRICCQSSVVGSQFLQAAGRAWAVKHTKSNEVVYVSGGDGSTSQGEF HEMLNYVALHKLPLVTVVQNNAWAISVPFKDQCSTDLVRLGESYQGLSVYEVDGGDYFKLVDTFSKAVDQARHTSVPALI LVDVMRLEPHSNSDNHEKYRSREDLDHCKSHDPLIRLERLMIDECGISPAEILDIKAEAEAEVTRACEIAEGMPFPSKGS TSHDVFSPHTTSLIDYENSLEAQRLRDTQPKVMRDAITEALIEEMSRDSGVVVFGEDVAGDKGGVFGVTRNLTDRFGSER CFNTPLAEATIIGTAIGMAMDGIHKPVAEIQFADYIWPGINQLFSEASSIYYRSAGEWEVPLVIRAPCGGYIQGGPYHSQ SIEAFLAHCPGIKVAYPSNAADAKALLKAAIRDPNPVVFLEHKALYQRRIFSACPVFSSDYVLPFGKAAITQVGSDLTIV SWGMSLVMSMEVAKELAALDISAEVIDLRTIVPCDFSTVIESVKKTSKLLIAHEASEFCGFGAELAATVAEQAYAYLDAP IRRVAGLHAPVPYSKILENEVLPQKEKIFQAAKSLAEF
Specific function: The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components:branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltran
COG id: COG0022
COG function: function code C; Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI4557353, Length=372, Percent_Identity=40.8602150537634, Blast_Score=255, Evalue=9e-68, Organism=Homo sapiens, GI34101272, Length=372, Percent_Identity=40.8602150537634, Blast_Score=255, Evalue=9e-68, Organism=Homo sapiens, GI156564403, Length=344, Percent_Identity=38.0813953488372, Blast_Score=223, Evalue=3e-58, Organism=Homo sapiens, GI291084858, Length=344, Percent_Identity=36.046511627907, Blast_Score=202, Evalue=1e-51, Organism=Homo sapiens, GI258645172, Length=331, Percent_Identity=28.3987915407855, Blast_Score=109, Evalue=7e-24, Organism=Homo sapiens, GI11386135, Length=332, Percent_Identity=28.3132530120482, Blast_Score=106, Evalue=8e-23, Organism=Homo sapiens, GI4885543, Length=319, Percent_Identity=27.8996865203762, Blast_Score=100, Evalue=8e-21, Organism=Homo sapiens, GI4505685, Length=315, Percent_Identity=27.9365079365079, Blast_Score=97, Evalue=4e-20, Organism=Homo sapiens, GI291084742, Length=315, Percent_Identity=27.9365079365079, Blast_Score=97, Evalue=6e-20, Organism=Homo sapiens, GI291084744, Length=278, Percent_Identity=28.0575539568345, Blast_Score=94, Evalue=5e-19, Organism=Homo sapiens, GI291084757, Length=181, Percent_Identity=28.7292817679558, Blast_Score=72, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17538422, Length=335, Percent_Identity=40.5970149253731, Blast_Score=250, Evalue=2e-66, Organism=Caenorhabditis elegans, GI17506935, Length=355, Percent_Identity=41.6901408450704, Blast_Score=230, Evalue=1e-60, Organism=Caenorhabditis elegans, GI86563357, Length=300, Percent_Identity=27.6666666666667, Blast_Score=103, Evalue=3e-22, Organism=Caenorhabditis elegans, GI86563355, Length=300, Percent_Identity=27.6666666666667, Blast_Score=103, Evalue=3e-22, Organism=Caenorhabditis elegans, GI32564172, Length=303, Percent_Identity=26.7326732673267, Blast_Score=86, Evalue=6e-17, Organism=Caenorhabditis elegans, GI17536047, Length=303, Percent_Identity=26.7326732673267, Blast_Score=86, Evalue=6e-17, Organism=Saccharomyces cerevisiae, GI6319698, Length=358, Percent_Identity=37.4301675977654, Blast_Score=233, Evalue=7e-62, Organism=Saccharomyces cerevisiae, GI6321026, Length=253, Percent_Identity=26.0869565217391, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI160714832, Length=328, Percent_Identity=41.7682926829268, Blast_Score=246, Evalue=5e-65, Organism=Drosophila melanogaster, GI160714828, Length=328, Percent_Identity=41.7682926829268, Blast_Score=246, Evalue=5e-65, Organism=Drosophila melanogaster, GI21358145, Length=349, Percent_Identity=39.2550143266476, Blast_Score=236, Evalue=6e-62, Organism=Drosophila melanogaster, GI24650940, Length=349, Percent_Identity=39.2550143266476, Blast_Score=236, Evalue=6e-62, Organism=Drosophila melanogaster, GI21355903, Length=334, Percent_Identity=23.9520958083832, Blast_Score=94, Evalue=3e-19, Organism=Drosophila melanogaster, GI24639746, Length=259, Percent_Identity=25.4826254826255, Blast_Score=75, Evalue=1e-13, Organism=Drosophila melanogaster, GI24639740, Length=259, Percent_Identity=25.4826254826255, Blast_Score=75, Evalue=1e-13, Organism=Drosophila melanogaster, GI24639744, Length=259, Percent_Identity=25.4826254826255, Blast_Score=75, Evalue=1e-13, Organism=Drosophila melanogaster, GI28571106, Length=259, Percent_Identity=25.4826254826255, Blast_Score=75, Evalue=1e-13, Organism=Drosophila melanogaster, GI24639748, Length=267, Percent_Identity=28.8389513108614, Blast_Score=74, Evalue=2e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009014 - InterPro: IPR015941 - InterPro: IPR005475 - InterPro: IPR005476 [H]
Pfam domain/function: PF02779 Transket_pyr; PF02780 Transketolase_C [H]
EC number: =1.2.4.4 [H]
Molecular weight: Translated: 74334; Mature: 74334
Theoretical pI: Translated: 5.78; Mature: 5.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVAIQHELGSSIKEVLKLVWSLRFAENKMLLLSRQSDSGGTFQLSCAGHELVGVVAGKSL CEEECHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEEECCCHHHHHHHHHHH LRGKDWSFPYYRDQGFPVGLGCDLSEIFASFLGRLAPNHSSGRMMPYHYSHKKLRICCQS HCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHCCCCCCCCCCCEECCCCCEEHHHHH SVVGSQFLQAAGRAWAVKHTKSNEVVYVSGGDGSTSQGEFHEMLNYVALHKLPLVTVVQN HHHHHHHHHHCCCEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCEEEEEEC NAWAISVPFKDQCSTDLVRLGESYQGLSVYEVDGGDYFKLVDTFSKAVDQARHTSVPALI CCEEEECCCCCCCCHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHH LVDVMRLEPHSNSDNHEKYRSREDLDHCKSHDPLIRLERLMIDECGISPAEILDIKAEAE HHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHEEECCCHH AEVTRACEIAEGMPFPSKGSTSHDVFSPHTTSLIDYENSLEAQRLRDTQPKVMRDAITEA HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHCCCHHHHHHHHHHH LIEEMSRDSGVVVFGEDVAGDKGGVFGVTRNLTDRFGSERCFNTPLAEATIIGTAIGMAM HHHHHCCCCCEEEECCCCCCCCCCEEEEEHHHHHHHCCCHHCCCCCHHHHHHHHHHHHHH DGIHKPVAEIQFADYIWPGINQLFSEASSIYYRSAGEWEVPLVIRAPCGGYIQGGPYHSQ HHHHCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEECCEEEECCCCCCCCCCCCCHH SIEAFLAHCPGIKVAYPSNAADAKALLKAAIRDPNPVVFLEHKALYQRRIFSACPVFSSD HHHHHHHHCCCCEEECCCCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHCCCCCCC YVLPFGKAAITQVGSDLTIVSWGMSLVMSMEVAKELAALDISAEVIDLRTIVPCDFSTVI CCCCCCHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCHHEEEEEEECCCCHHHHH ESVKKTSKLLIAHEASEFCGFGAELAATVAEQAYAYLDAPIRRVAGLHAPVPYSKILENE HHHHHHHHEEEEECHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH VLPQKEKIFQAAKSLAEF CCCHHHHHHHHHHHHHCC >Mature Secondary Structure MVAIQHELGSSIKEVLKLVWSLRFAENKMLLLSRQSDSGGTFQLSCAGHELVGVVAGKSL CEEECHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEEECCCHHHHHHHHHHH LRGKDWSFPYYRDQGFPVGLGCDLSEIFASFLGRLAPNHSSGRMMPYHYSHKKLRICCQS HCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHCCCCCCCCCCCEECCCCCEEHHHHH SVVGSQFLQAAGRAWAVKHTKSNEVVYVSGGDGSTSQGEFHEMLNYVALHKLPLVTVVQN HHHHHHHHHHCCCEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCEEEEEEC NAWAISVPFKDQCSTDLVRLGESYQGLSVYEVDGGDYFKLVDTFSKAVDQARHTSVPALI CCEEEECCCCCCCCHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHH LVDVMRLEPHSNSDNHEKYRSREDLDHCKSHDPLIRLERLMIDECGISPAEILDIKAEAE HHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHEEECCCHH AEVTRACEIAEGMPFPSKGSTSHDVFSPHTTSLIDYENSLEAQRLRDTQPKVMRDAITEA HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHCCCHHHHHHHHHHH LIEEMSRDSGVVVFGEDVAGDKGGVFGVTRNLTDRFGSERCFNTPLAEATIIGTAIGMAM HHHHHCCCCCEEEECCCCCCCCCCEEEEEHHHHHHHCCCHHCCCCCHHHHHHHHHHHHHH DGIHKPVAEIQFADYIWPGINQLFSEASSIYYRSAGEWEVPLVIRAPCGGYIQGGPYHSQ HHHHCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEECCEEEECCCCCCCCCCCCCHH SIEAFLAHCPGIKVAYPSNAADAKALLKAAIRDPNPVVFLEHKALYQRRIFSACPVFSSD HHHHHHHHCCCCEEECCCCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHCCCCCCC YVLPFGKAAITQVGSDLTIVSWGMSLVMSMEVAKELAALDISAEVIDLRTIVPCDFSTVI CCCCCCHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCHHEEEEEEECCCCHHHHH ESVKKTSKLLIAHEASEFCGFGAELAATVAEQAYAYLDAPIRRVAGLHAPVPYSKILENE HHHHHHHHEEEEECHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH VLPQKEKIFQAAKSLAEF CCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8504804; 8969508; 9384377 [H]