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The map label for this gene is sopB [H]

Identifier: 59714354

GI number: 59714354

Start: 1328112

End: 1329086

Strand: Reverse

Name: sopB [H]

Synonym: VF_A1171

Alternate gene names: 59714354

Gene position: 1329086-1328112 (Counterclockwise)

Preceding gene: 59714355

Following gene: 59714352

Centisome position: 99.91

GC content: 39.18

Gene sequence:

>975_bases
ATGGCGATTAAAACTTCTGACTTAAACGCAAAATTATTTGGTAAAACTAATAAGCGCCGTGCGACAACTCCTGTCGAAGC
ACAAAAAGCAGCTAAATCACAAGCTCAAGTTATTGAATTAGCTGTTGCCGGTGAAGATTTAGTGACGTTTGAGTTACGTA
AAATTCCTGCTAAAGATGTGAGTTCATCAACGGTAGTCTTTGCTGAAAATGCTCGTGAACAGTCTTTTTTAACTGAGCAT
GCACTATCAGATATCTTATCTACATTACGTGATCGTGGTCAGCAATATCCAGCTGTTGGTCGTGTAGTTGAAGGCGGCAA
GATTGAAGTTCTTGATGGTAGCCGTCGTCGTATGTCATGTATTTTGGCTGAGCAAGATTTCTTAATCTATGTTGCCGAAG
GTATTAATACAAAACATGCCAAATTCTTATCAGATGTTGCCAATGCTCATAAACCACTTTCATTATATGAACGTGGTAAA
GAAATGCAGGCAATGCTTTCTCGTGGTGATGTTGCCGATCAAAAAGAATTAGCAAAAGTATGCCAATGCAGTGAAGCTTT
AGTCAGTGGAGCTCTAAAAGCAGCGACTTTACCATTGGAATTACTACAAGCTTACCCAAGCGTAAGTGAAATAGGTCGTC
CAACTGTAGTTAAGCTTCATAAGCTCTATAACGCCCTCTCAGAAGAAGAGCAGAAAACCTTATTAAAGCAATGTGCTGGT
GAACAAGGAGCTGCCTGGACGCGTTCTACGGCTCTTGGTGTTAGTCGAATGACTAAAGAAGTAACAGAGCTGATTGAAGT
ATGGATTGAAGATCTATTACCGAAAAAAGAACCAGCAAAATCGTTAACGACTGAATTAGTAAAAGGGCGTGCTTCTTATA
AACGTAAAGGCTCTGGCTTAACGTTAAGTTTGAAAAAAGTTGATGATGCTTTGATGGAAGATATTCTTGAATACATTAGT
CAAAAAGTATCGTAA

Upstream 100 bases:

>100_bases
ACTTGCTGTAGCTCAAGATGCTGTTAAGAAAAGTGCATTAGAGTTTGAACGCGTATTACACAGTCACTGGAATTCATTAA
ATAAAGGGGAGTACTAATTC

Downstream 100 bases:

>100_bases
CTAGTATTTATTAAATAATAAAAAGAGCCTGATTTAATCATTAAATCAGGCTCTTTTTTTATCTAAGAAAGCATTAAACC
AGTGGTGCTAAATCAGCAGG

Product: ParB family protein

Products: NA

Alternate protein names: Plasmid partition protein B [H]

Number of amino acids: Translated: 324; Mature: 323

Protein sequence:

>324_residues
MAIKTSDLNAKLFGKTNKRRATTPVEAQKAAKSQAQVIELAVAGEDLVTFELRKIPAKDVSSSTVVFAENAREQSFLTEH
ALSDILSTLRDRGQQYPAVGRVVEGGKIEVLDGSRRRMSCILAEQDFLIYVAEGINTKHAKFLSDVANAHKPLSLYERGK
EMQAMLSRGDVADQKELAKVCQCSEALVSGALKAATLPLELLQAYPSVSEIGRPTVVKLHKLYNALSEEEQKTLLKQCAG
EQGAAWTRSTALGVSRMTKEVTELIEVWIEDLLPKKEPAKSLTTELVKGRASYKRKGSGLTLSLKKVDDALMEDILEYIS
QKVS

Sequences:

>Translated_324_residues
MAIKTSDLNAKLFGKTNKRRATTPVEAQKAAKSQAQVIELAVAGEDLVTFELRKIPAKDVSSSTVVFAENAREQSFLTEH
ALSDILSTLRDRGQQYPAVGRVVEGGKIEVLDGSRRRMSCILAEQDFLIYVAEGINTKHAKFLSDVANAHKPLSLYERGK
EMQAMLSRGDVADQKELAKVCQCSEALVSGALKAATLPLELLQAYPSVSEIGRPTVVKLHKLYNALSEEEQKTLLKQCAG
EQGAAWTRSTALGVSRMTKEVTELIEVWIEDLLPKKEPAKSLTTELVKGRASYKRKGSGLTLSLKKVDDALMEDILEYIS
QKVS
>Mature_323_residues
AIKTSDLNAKLFGKTNKRRATTPVEAQKAAKSQAQVIELAVAGEDLVTFELRKIPAKDVSSSTVVFAENAREQSFLTEHA
LSDILSTLRDRGQQYPAVGRVVEGGKIEVLDGSRRRMSCILAEQDFLIYVAEGINTKHAKFLSDVANAHKPLSLYERGKE
MQAMLSRGDVADQKELAKVCQCSEALVSGALKAATLPLELLQAYPSVSEIGRPTVVKLHKLYNALSEEEQKTLLKQCAGE
QGAAWTRSTALGVSRMTKEVTELIEVWIEDLLPKKEPAKSLTTELVKGRASYKRKGSGLTLSLKKVDDALMEDILEYISQ
KVS

Specific function: Control of plasmid partitioning; required to recognize the cis-acting. Binds specifically with the DNA segment containing the sopC region. SopB is trans-acting [H]

COG id: COG1475

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the parB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004437
- InterPro:   IPR003115 [H]

Pfam domain/function: PF02195 ParBc [H]

EC number: NA

Molecular weight: Translated: 35563; Mature: 35432

Theoretical pI: Translated: 8.83; Mature: 8.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIKTSDLNAKLFGKTNKRRATTPVEAQKAAKSQAQVIELAVAGEDLVTFELRKIPAKDV
CCEECCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHCCCCCC
SSSTVVFAENAREQSFLTEHALSDILSTLRDRGQQYPAVGRVVEGGKIEVLDGSRRRMSC
CCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHEECCCEEEEECCCCHHHHH
ILAEQDFLIYVAEGINTKHAKFLSDVANAHKPLSLYERGKEMQAMLSRGDVADQKELAKV
HEECCCEEEEEECCCCHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHCCCCCCHHHHHHH
CQCSEALVSGALKAATLPLELLQAYPSVSEIGRPTVVKLHKLYNALSEEEQKTLLKQCAG
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
EQGAAWTRSTALGVSRMTKEVTELIEVWIEDLLPKKEPAKSLTTELVKGRASYKRKGSGL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCC
TLSLKKVDDALMEDILEYISQKVS
EEEHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AIKTSDLNAKLFGKTNKRRATTPVEAQKAAKSQAQVIELAVAGEDLVTFELRKIPAKDV
CEECCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHCCCCCC
SSSTVVFAENAREQSFLTEHALSDILSTLRDRGQQYPAVGRVVEGGKIEVLDGSRRRMSC
CCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHEECCCEEEEECCCCHHHHH
ILAEQDFLIYVAEGINTKHAKFLSDVANAHKPLSLYERGKEMQAMLSRGDVADQKELAKV
HEECCCEEEEEECCCCHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHCCCCCCHHHHHHH
CQCSEALVSGALKAATLPLELLQAYPSVSEIGRPTVVKLHKLYNALSEEEQKTLLKQCAG
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
EQGAAWTRSTALGVSRMTKEVTELIEVWIEDLLPKKEPAKSLTTELVKGRASYKRKGSGL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCC
TLSLKKVDDALMEDILEYISQKVS
EEEHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9722640; 9628576 [H]