Click here to switch to the map view.

The map label for this gene is yifE [C]

Identifier: 59714228

GI number: 59714228

Start: 1179843

End: 1180241

Strand: Reverse

Name: yifE [C]

Synonym: VF_A1045

Alternate gene names: 59714228

Gene position: 1180241-1179843 (Counterclockwise)

Preceding gene: 59714231

Following gene: 59714226

Centisome position: 88.72

GC content: 38.1

Gene sequence:

>399_bases
TTGTACAATGTGACTGCACTGAATTACATATACATTTTTTGTGGTCACGAAGAAGCATCAATGCGAACTCTTACTAAATT
TTACGATGACAAAAACTTCAAACGAGGTTTTAGTCGCAGTGGTTTCACAATCCGCGAAGCGTTGATTTTAGAAACCTATG
GTCGAACAATGCAGTCTCTATTAGACGGTACGTTGGCTCCTGAATCAGAAGCAGAATTGCGATTTGTTGAGCAAATACAG
CATCTACCTGCTGAGACTTCAGAATTTGCGCAATGTTGGTTGAAGTATCAAAATAAAATTAACTTTAAGCCAAGATTTCA
TACATTATGCGGAACACAGCGTTCATCAGATAATTCAGATGATGACGATAATGGTTCTGCCGATGATGATACAGAGTAA

Upstream 100 bases:

>100_bases
TAAGAAGGTTTTAAGCAGATCAGTATCCAAAGTTATCATCTCTTTGATGGTGGTAACCGCCACAATAAAATATTTTGATT
GAAATCGCTAATATTTTTCG

Downstream 100 bases:

>100_bases
GTAACGTAAAAAGCCCGTTTATATAAGCGGGCTTTTTGTTTTTTTATGAATAAATTTGGTTATAAATAGGGTTGCAGCTC
TTTTGCCATAAACTCCGCTA

Product: hypothetical protein

Products: NA

Alternate protein names: ORF3 [H]

Number of amino acids: Translated: 132; Mature: 132

Protein sequence:

>132_residues
MYNVTALNYIYIFCGHEEASMRTLTKFYDDKNFKRGFSRSGFTIREALILETYGRTMQSLLDGTLAPESEAELRFVEQIQ
HLPAETSEFAQCWLKYQNKINFKPRFHTLCGTQRSSDNSDDDDNGSADDDTE

Sequences:

>Translated_132_residues
MYNVTALNYIYIFCGHEEASMRTLTKFYDDKNFKRGFSRSGFTIREALILETYGRTMQSLLDGTLAPESEAELRFVEQIQ
HLPAETSEFAQCWLKYQNKINFKPRFHTLCGTQRSSDNSDDDDNGSADDDTE
>Mature_132_residues
MYNVTALNYIYIFCGHEEASMRTLTKFYDDKNFKRGFSRSGFTIREALILETYGRTMQSLLDGTLAPESEAELRFVEQIQ
HLPAETSEFAQCWLKYQNKINFKPRFHTLCGTQRSSDNSDDDDNGSADDDTE

Specific function: Not known, a mutation in ORF3 causes a slight decrease in transformation efficiency [H]

COG id: COG3085

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0438 family [H]

Homologues:

Organism=Escherichia coli, GI2367277, Length=103, Percent_Identity=35.9223300970874, Blast_Score=67, Evalue=5e-13,

Paralogues:

None

Copy number: 340 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007335 [H]

Pfam domain/function: PF04219 DUF413 [H]

EC number: NA

Molecular weight: Translated: 15259; Mature: 15259

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYNVTALNYIYIFCGHEEASMRTLTKFYDDKNFKRGFSRSGFTIREALILETYGRTMQSL
CCCCEEEEEEEEEECCCHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
LDGTLAPESEAELRFVEQIQHLPAETSEFAQCWLKYQNKINFKPRFHTLCGTQRSSDNSD
HCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCC
DDDNGSADDDTE
CCCCCCCCCCCC
>Mature Secondary Structure
MYNVTALNYIYIFCGHEEASMRTLTKFYDDKNFKRGFSRSGFTIREALILETYGRTMQSL
CCCCEEEEEEEEEECCCHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
LDGTLAPESEAELRFVEQIQHLPAETSEFAQCWLKYQNKINFKPRFHTLCGTQRSSDNSD
HCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCC
DDDNGSADDDTE
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1438213; 7542800; 10675023 [H]