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The map label for this gene is ybcM [H]

Identifier: 59714114

GI number: 59714114

Start: 1054291

End: 1055076

Strand: Reverse

Name: ybcM [H]

Synonym: VF_A0931

Alternate gene names: 59714114

Gene position: 1055076-1054291 (Counterclockwise)

Preceding gene: 59714115

Following gene: 59714110

Centisome position: 79.31

GC content: 35.75

Gene sequence:

>786_bases
ATGAGTGACACACTGCTTAAGGTACAAACTTATTCAGGCGTTAATGATCAACATTTACGTAATGTTCATATTTATGCTCC
AAGTATTATTTGGGTAAAATCTGGTATAAAAAGAGTAATTCAAGGTACTGAAAATTACGATATTGATGCTCAATTATGGT
TACTAACCGCGGCTAACCAAGATCTGAGTTTTATTAATAAACCAGCAAAAGATCATTTTTACTCGGTTCAGATCTGTTTT
TTGTTTCCGCCAACGCCTGAAATGATCGAGGAGAGTAAAGAGAATCGACGTAGACATGAACATCTTAACGCTATTAAGGT
TTCTTCAACATTAGCGTATGGTTTTTCTTTGCTAATCGAGATGAGTTCTCAGAATTTAAGCTCTAATGTGCAAAAACATC
ATTTATTTGCCTTTTATCAGCAGCTAGTAGAAGTTGGTGCATTGCATGTTTTATTCTCAGAGTCCCATGATTCTTTGCAA
AATAAACTGAGTGCTTATTTTTCCAAAGATCCCGCAGAAAATTATCAGTTAGATGAAGTATCACATGCTTTCTCTATGAG
TCGAGCGACGTTGATCCGTCGATTAAATCAAGATGGAACCAATTTTAGAACGGTATTAGCGAACGTAAGAATGAGTCATG
CTCTTTCTTTAATGCAAGAGAGAAAGCAAAGCCAATTAGATCTGGCATTACAGTGTGGATATCAATCTGAAACACGTTTT
AGTCAACGTTTTCATCAGCAGTTTGGTATTACCCCCAAACAATATATGAAAACCGTGTCGTATTAA

Upstream 100 bases:

>100_bases
CACCAGCAGTAGTTGGTTATACTTTAAATAGCATGGCGTTAGACAAAGCGGTATTAACAGCAACGTATGTGCGTTAATTG
ATAAGAATTAGGAGCATAAA

Downstream 100 bases:

>100_bases
TTAAAGACGTATTGATTAAAAAAGATAAAAAAACAGCGAGCCAAGTGCTCGCTGTTTTATGTTGTTACCTAGCTAAAAGC
GTTGTTATCGTTATATCACA

Product: transcriptional regulatory protein, AraC-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 260

Protein sequence:

>261_residues
MSDTLLKVQTYSGVNDQHLRNVHIYAPSIIWVKSGIKRVIQGTENYDIDAQLWLLTAANQDLSFINKPAKDHFYSVQICF
LFPPTPEMIEESKENRRRHEHLNAIKVSSTLAYGFSLLIEMSSQNLSSNVQKHHLFAFYQQLVEVGALHVLFSESHDSLQ
NKLSAYFSKDPAENYQLDEVSHAFSMSRATLIRRLNQDGTNFRTVLANVRMSHALSLMQERKQSQLDLALQCGYQSETRF
SQRFHQQFGITPKQYMKTVSY

Sequences:

>Translated_261_residues
MSDTLLKVQTYSGVNDQHLRNVHIYAPSIIWVKSGIKRVIQGTENYDIDAQLWLLTAANQDLSFINKPAKDHFYSVQICF
LFPPTPEMIEESKENRRRHEHLNAIKVSSTLAYGFSLLIEMSSQNLSSNVQKHHLFAFYQQLVEVGALHVLFSESHDSLQ
NKLSAYFSKDPAENYQLDEVSHAFSMSRATLIRRLNQDGTNFRTVLANVRMSHALSLMQERKQSQLDLALQCGYQSETRF
SQRFHQQFGITPKQYMKTVSY
>Mature_260_residues
SDTLLKVQTYSGVNDQHLRNVHIYAPSIIWVKSGIKRVIQGTENYDIDAQLWLLTAANQDLSFINKPAKDHFYSVQICFL
FPPTPEMIEESKENRRRHEHLNAIKVSSTLAYGFSLLIEMSSQNLSSNVQKHHLFAFYQQLVEVGALHVLFSESHDSLQN
KLSAYFSKDPAENYQLDEVSHAFSMSRATLIRRLNQDGTNFRTVLANVRMSHALSLMQERKQSQLDLALQCGYQSETRFS
QRFHQQFGITPKQYMKTVSY

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786758, Length=147, Percent_Identity=29.9319727891156, Blast_Score=79, Evalue=4e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30126; Mature: 29994

Theoretical pI: Translated: 8.62; Mature: 8.62

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDTLLKVQTYSGVNDQHLRNVHIYAPSIIWVKSGIKRVIQGTENYDIDAQLWLLTAANQ
CCCCEEEEEECCCCCHHHHCEEEEECCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCC
DLSFINKPAKDHFYSVQICFLFPPTPEMIEESKENRRRHEHLNAIKVSSTLAYGFSLLIE
CHHHHCCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MSSQNLSSNVQKHHLFAFYQQLVEVGALHVLFSESHDSLQNKLSAYFSKDPAENYQLDEV
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHCCCCCCCCCHHHH
SHAFSMSRATLIRRLNQDGTNFRTVLANVRMSHALSLMQERKQSQLDLALQCGYQSETRF
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHH
SQRFHQQFGITPKQYMKTVSY
HHHHHHHHCCCHHHHHHHHCC
>Mature Secondary Structure 
SDTLLKVQTYSGVNDQHLRNVHIYAPSIIWVKSGIKRVIQGTENYDIDAQLWLLTAANQ
CCCEEEEEECCCCCHHHHCEEEEECCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCC
DLSFINKPAKDHFYSVQICFLFPPTPEMIEESKENRRRHEHLNAIKVSSTLAYGFSLLIE
CHHHHCCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MSSQNLSSNVQKHHLFAFYQQLVEVGALHVLFSESHDSLQNKLSAYFSKDPAENYQLDEV
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHCCCCCCCCCHHHH
SHAFSMSRATLIRRLNQDGTNFRTVLANVRMSHALSLMQERKQSQLDLALQCGYQSETRF
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHH
SQRFHQQFGITPKQYMKTVSY
HHHHHHHHCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]