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The map label for this gene is tcpF

Identifier: 59714049

GI number: 59714049

Start: 978674

End: 979534

Strand: Reverse

Name: tcpF

Synonym: VF_A0866

Alternate gene names: NA

Gene position: 979534-978674 (Counterclockwise)

Preceding gene: 59714050

Following gene: 59714048

Centisome position: 73.63

GC content: 33.45

Gene sequence:

>861_bases
ATGTATTGTTTAAATAAATCATGTTTTTTTTTATTATTAACATCTTTTAATATATTCGCATTTGATAGTAGCTATGAATC
AGTATCATCTTATGATGACAGAACTTTAGCTGGAGTCCGTGATATTTATAATGCACCATATAGCTTTTGTCGGAATGATG
GATTATCTGATGATTTATGCGATAGCGTTTCTTTAAAAATAGGTGGTGACACATTTAAAAGAGTTTATATAGATCAAAAC
GTTGCAGATAAATCACTTAATTATTTTTCTCATGTGAATGAATCAACTTTATGGTCGATTACAAATAATTACAAACTAGA
AAATCAAAATAAGTTTGGTGTTCCTACTTTAGGTCAATTAGATCATATGATTGTAAATGGATTAGTTCCAAAGGGAGTTG
CTTCTGGCTATTGGTTTTGGTCTACTCTTAATAATAAGGCTAAGATTGCATATCCTAAGAATTCTAATGCCGACAATGAT
AATACTGCGATGATTATGCGATTGGTTTCTAGCTCTTATCCTTCATCTTGTGATGAAAATGATTGTAATTATTTCAAGGA
TAATGAACCTTGGACTTTACAATCTGGCAGTTTGAGTTCATTTACGGTAAGAACCAATTGGGGATATAGAATAAATGGAC
GAGATTTCTCGTGGCGTAAAACTTGGAGACAGGCTAAACATGCTATTCCAGCAGGAGCAACAAATGTTTGGATGGAAATT
TGGCACGATGGTGCCCCAGGATATTCTGGTCGATTTTATAATATTGAGAACCAACGAGGGATGTCCCCTGTTGTTTGTAT
AAGGCAAAGAGGTTCATTATTTGTTACTGGTGCTGATTTATTACGTGAATGGTGTTGGTAA

Upstream 100 bases:

>100_bases
ATTAAAAAATATATCATTAATTATGTTGGCAGGTTCAGTAATCTGGATCTTTGGTGCGATATTTAGCTTGGTTGATAAAT
TAGGTTCAGGATTTTAGATT

Downstream 100 bases:

>100_bases
TTTTTATGCTGGTTGAAACATTTGTTGATAATTTTGTTGGATTTGCTTTTATACGTTCATTAAATGATGATGTTATTTTA
TATAGTAATGATAGTTATAA

Product: toxin coregulated pilus biosynthesis protein TcpF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MYCLNKSCFFLLLTSFNIFAFDSSYESVSSYDDRTLAGVRDIYNAPYSFCRNDGLSDDLCDSVSLKIGGDTFKRVYIDQN
VADKSLNYFSHVNESTLWSITNNYKLENQNKFGVPTLGQLDHMIVNGLVPKGVASGYWFWSTLNNKAKIAYPKNSNADND
NTAMIMRLVSSSYPSSCDENDCNYFKDNEPWTLQSGSLSSFTVRTNWGYRINGRDFSWRKTWRQAKHAIPAGATNVWMEI
WHDGAPGYSGRFYNIENQRGMSPVVCIRQRGSLFVTGADLLREWCW

Sequences:

>Translated_286_residues
MYCLNKSCFFLLLTSFNIFAFDSSYESVSSYDDRTLAGVRDIYNAPYSFCRNDGLSDDLCDSVSLKIGGDTFKRVYIDQN
VADKSLNYFSHVNESTLWSITNNYKLENQNKFGVPTLGQLDHMIVNGLVPKGVASGYWFWSTLNNKAKIAYPKNSNADND
NTAMIMRLVSSSYPSSCDENDCNYFKDNEPWTLQSGSLSSFTVRTNWGYRINGRDFSWRKTWRQAKHAIPAGATNVWMEI
WHDGAPGYSGRFYNIENQRGMSPVVCIRQRGSLFVTGADLLREWCW
>Mature_286_residues
MYCLNKSCFFLLLTSFNIFAFDSSYESVSSYDDRTLAGVRDIYNAPYSFCRNDGLSDDLCDSVSLKIGGDTFKRVYIDQN
VADKSLNYFSHVNESTLWSITNNYKLENQNKFGVPTLGQLDHMIVNGLVPKGVASGYWFWSTLNNKAKIAYPKNSNADND
NTAMIMRLVSSSYPSSCDENDCNYFKDNEPWTLQSGSLSSFTVRTNWGYRINGRDFSWRKTWRQAKHAIPAGATNVWMEI
WHDGAPGYSGRFYNIENQRGMSPVVCIRQRGSLFVTGADLLREWCW

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32663; Mature: 32663

Theoretical pI: Translated: 7.31; Mature: 7.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYCLNKSCFFLLLTSFNIFAFDSSYESVSSYDDRTLAGVRDIYNAPYSFCRNDGLSDDLC
CCCCCCHHHHHHHHHCEEEEECCCHHHHHHCCCHHHHHHHHHHHCCHHHHHCCCCCHHHH
DSVSLKIGGDTFKRVYIDQNVADKSLNYFSHVNESTLWSITNNYKLENQNKFGVPTLGQL
CCEEEEECCCEEEEEEECCCCCHHHHHHHHHCCCCEEEEEECCEEECCCCCCCCCCHHHH
DHMIVNGLVPKGVASGYWFWSTLNNKAKIAYPKNSNADNDNTAMIMRLVSSSYPSSCDEN
HHHHHHCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCC
DCNYFKDNEPWTLQSGSLSSFTVRTNWGYRINGRDFSWRKTWRQAKHAIPAGATNVWMEI
CCCCCCCCCCEEEECCCCCEEEEEECCCEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHE
WHDGAPGYSGRFYNIENQRGMSPVVCIRQRGSLFVTGADLLREWCW
ECCCCCCCCCEEEEECCCCCCCCEEEEECCCCEEEECHHHHHHHCC
>Mature Secondary Structure
MYCLNKSCFFLLLTSFNIFAFDSSYESVSSYDDRTLAGVRDIYNAPYSFCRNDGLSDDLC
CCCCCCHHHHHHHHHCEEEEECCCHHHHHHCCCHHHHHHHHHHHCCHHHHHCCCCCHHHH
DSVSLKIGGDTFKRVYIDQNVADKSLNYFSHVNESTLWSITNNYKLENQNKFGVPTLGQL
CCEEEEECCCEEEEEEECCCCCHHHHHHHHHCCCCEEEEEECCEEECCCCCCCCCCHHHH
DHMIVNGLVPKGVASGYWFWSTLNNKAKIAYPKNSNADNDNTAMIMRLVSSSYPSSCDEN
HHHHHHCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCC
DCNYFKDNEPWTLQSGSLSSFTVRTNWGYRINGRDFSWRKTWRQAKHAIPAGATNVWMEI
CCCCCCCCCCEEEECCCCCEEEEEECCCEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHE
WHDGAPGYSGRFYNIENQRGMSPVVCIRQRGSLFVTGADLLREWCW
ECCCCCCCCCEEEEECCCCCCCCEEEEECCCCEEEECHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA