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The map label for this gene is ydeE [H]

Identifier: 59713968

GI number: 59713968

Start: 880057

End: 880956

Strand: Reverse

Name: ydeE [H]

Synonym: VF_A0785

Alternate gene names: 59713968

Gene position: 880956-880057 (Counterclockwise)

Preceding gene: 59713969

Following gene: 59713967

Centisome position: 66.22

GC content: 35.78

Gene sequence:

>900_bases
ATGTCGACCGATTTTGAAATAGATAAATCGTTTAATCGAATTGAGAATATTTTGGTATTTATCCACCAAAATATAGATAA
GCCATTAACTGTCGAAATTTTAGCAGAAATGAGCTGTTGGTCTCGATGGCAATTACAAAGAGTGTTTCAGAATTACACAG
GTATGAATGTTGCGCAATATGTTCGAGAACAACGTCTAAGTATGTCTGCACTGGAGGTTTTGGATAAAAAAAAGCGTATG
TTAGATATCGCTTATTCTTATGGATTTACTTCTGAAATTGCGTTTAGTCGTGCATTTAAACAATATTTTCATAAGTCACC
ACGTGAATACCAAAAGCAAGCGAAAAAAATAGGGATTCAAAAACCATTTTTAAAGCAAGTAAATGTAGACCCATTACTTA
ACTCACATTTTTATCGTGTTCGTCTTGAATATAAACCCAGTTTCAAAGTGCTCGGATTAAGCACCAGAGTACAAGGTATT
TTATCTGACACTCCAGATTTTATCGAAAAAGTCCCTTCGGTGTGGAATGCATTAGATACGTATATTACGTGTTTATCATC
TATTCCAGAGCAGAAATATGCGGTTATTGATACTCGTGAAGAGAATGCTGACTTTTTACTTTATTGGGCTGGTATTAGTT
GTGACGCTCTTTCTATTGATGAGTTGAACCTACATAAAGCTGATTTACAAATAATCACGATTCCAGAACAAGAGTATGCT
GTTTTGCCCTTTAAAGGTGCAGCACAAGATTTTTCTAAATCTGTTGAATGGCTTATATCTGAATGGTTACCGACATCAGG
CCATCAAGGTATCGAGGGCTTTGATCTGGAAATTTATCGATCAGATACGACTCAAGGGATAATTGATGTCGAATATTGGT
TGCCTATCCGCAGTTTGTGA

Upstream 100 bases:

>100_bases
TGGGTCTTCCGTTTTTTATTTTACTATTTCTCGGTTATGTTTTTGATAAGCCATAGAACACAATGTAAGCTATATAGAGT
TAATGTGTTTGGAGTTTTAT

Downstream 100 bases:

>100_bases
TTTTTATTATAAATCAATTTATCAATAAATAATTTTCTTCATGCACCAAATTGTTAACTTTCATTAGGGATAAATCATTA
TACTCTTGCGCAAGAGAATC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 298

Protein sequence:

>299_residues
MSTDFEIDKSFNRIENILVFIHQNIDKPLTVEILAEMSCWSRWQLQRVFQNYTGMNVAQYVREQRLSMSALEVLDKKKRM
LDIAYSYGFTSEIAFSRAFKQYFHKSPREYQKQAKKIGIQKPFLKQVNVDPLLNSHFYRVRLEYKPSFKVLGLSTRVQGI
LSDTPDFIEKVPSVWNALDTYITCLSSIPEQKYAVIDTREENADFLLYWAGISCDALSIDELNLHKADLQIITIPEQEYA
VLPFKGAAQDFSKSVEWLISEWLPTSGHQGIEGFDLEIYRSDTTQGIIDVEYWLPIRSL

Sequences:

>Translated_299_residues
MSTDFEIDKSFNRIENILVFIHQNIDKPLTVEILAEMSCWSRWQLQRVFQNYTGMNVAQYVREQRLSMSALEVLDKKKRM
LDIAYSYGFTSEIAFSRAFKQYFHKSPREYQKQAKKIGIQKPFLKQVNVDPLLNSHFYRVRLEYKPSFKVLGLSTRVQGI
LSDTPDFIEKVPSVWNALDTYITCLSSIPEQKYAVIDTREENADFLLYWAGISCDALSIDELNLHKADLQIITIPEQEYA
VLPFKGAAQDFSKSVEWLISEWLPTSGHQGIEGFDLEIYRSDTTQGIIDVEYWLPIRSL
>Mature_298_residues
STDFEIDKSFNRIENILVFIHQNIDKPLTVEILAEMSCWSRWQLQRVFQNYTGMNVAQYVREQRLSMSALEVLDKKKRML
DIAYSYGFTSEIAFSRAFKQYFHKSPREYQKQAKKIGIQKPFLKQVNVDPLLNSHFYRVRLEYKPSFKVLGLSTRVQGIL
SDTPDFIEKVPSVWNALDTYITCLSSIPEQKYAVIDTREENADFLLYWAGISCDALSIDELNLHKADLQIITIPEQEYAV
LPFKGAAQDFSKSVEWLISEWLPTSGHQGIEGFDLEIYRSDTTQGIIDVEYWLPIRSL

Specific function: Binds To The Right Arm Of The Replication Origin Oric Of The E.Coli Chromosome. Rob Binding May Influence The Formation Of The Nucleoprotein Structure, Required For Oric Function In The Initiation Of Replication. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790857, Length=273, Percent_Identity=25.2747252747253, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1790497, Length=100, Percent_Identity=33, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI87081928, Length=98, Percent_Identity=35.7142857142857, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34795; Mature: 34664

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTDFEIDKSFNRIENILVFIHQNIDKPLTVEILAEMSCWSRWQLQRVFQNYTGMNVAQY
CCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
VREQRLSMSALEVLDKKKRMLDIAYSYGFTSEIAFSRAFKQYFHKSPREYQKQAKKIGIQ
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC
KPFLKQVNVDPLLNSHFYRVRLEYKPSFKVLGLSTRVQGILSDTPDFIEKVPSVWNALDT
CCHHHHCCCCHHHCCCEEEEEEEECCCEEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHH
YITCLSSIPEQKYAVIDTREENADFLLYWAGISCDALSIDELNLHKADLQIITIPEQEYA
HHHHHHHCCCCCEEEEECCCCCCCEEEEEECCCCCEEECCCCCCEECCEEEEEECCCCEE
VLPFKGAAQDFSKSVEWLISEWLPTSGHQGIEGFDLEIYRSDTTQGIIDVEYWLPIRSL
EECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEECCCCCC
>Mature Secondary Structure 
STDFEIDKSFNRIENILVFIHQNIDKPLTVEILAEMSCWSRWQLQRVFQNYTGMNVAQY
CCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
VREQRLSMSALEVLDKKKRMLDIAYSYGFTSEIAFSRAFKQYFHKSPREYQKQAKKIGIQ
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC
KPFLKQVNVDPLLNSHFYRVRLEYKPSFKVLGLSTRVQGILSDTPDFIEKVPSVWNALDT
CCHHHHCCCCHHHCCCEEEEEEEECCCEEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHH
YITCLSSIPEQKYAVIDTREENADFLLYWAGISCDALSIDELNLHKADLQIITIPEQEYA
HHHHHHHCCCCCEEEEECCCCCCCEEEEEECCCCCEEECCCCCCEECCEEEEEECCCCEE
VLPFKGAAQDFSKSVEWLISEWLPTSGHQGIEGFDLEIYRSDTTQGIIDVEYWLPIRSL
EECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]