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The map label for this gene is ycjC [C]

Identifier: 59713884

GI number: 59713884

Start: 777672

End: 778328

Strand: Reverse

Name: ycjC [C]

Synonym: VF_A0701

Alternate gene names: 59713884

Gene position: 778328-777672 (Counterclockwise)

Preceding gene: 59713887

Following gene: 59713883

Centisome position: 58.51

GC content: 39.42

Gene sequence:

>657_bases
ATGATTAATGAGCACAAGGAGCGCTATGTGAGCGCAGAAAAAATAAACATGCAGGAAGCAAAAATCGTTAAAGTTGAGAA
AAATAACGAAGAGCAACCGATTGCTCCACTTGATCTTGGGCAAAGATTAAAAGATATACGGATTCAACTCGGTTTAACGC
TGGAAGAGGCGAGTAAAAGGACGGGGTTAGCACGCTCAACCTTATCAAAAATAGAAAACGAGCAAATATCACCAACATTT
CAAGCATTGCAAAAGTTAGCGACAGGCTTGGATATTGATATCCCACAAATCTTTGAACCGCCTAAAACAAAAGGGGCGGC
AGGTAGACGTGATATTACTTTAGCTGAGCAAGGTAAACCTCACCCAACGGCGACGTATGAACATGAGTTACTTGCCACGC
AATTATCTAATAAAAAAATGGTGCCTTTTAAAAGTCGAATTCGAGCTAGAGATTTTGATGCGTATGCAGAATGGGTTCGT
CACGATGGTGAAGAGTTTTTATTAGTTCTTGAGGGGGAAGTATGTTTTTACAGTGAATTTTATGAACCAGTAAATTTGAT
GGTTGGAGATAGCGTTTATTACGACGCAAGTATGGGACACGTATTAATATCAATCAGTAAAGAAGATGCTCAAATTCTTT
GGGTGACAGCAAAATAG

Upstream 100 bases:

>100_bases
TTGTTTCCTTTTTTGCTACCTAGCGCACTATTTAGACATTGTTGTTTCCTTTTATCTCGCAATTTTCTCCAGTAAAGTGA
ATATTAATAGCGCAATTTGA

Downstream 100 bases:

>100_bases
AAACATAGCTCAACACTTTTTATAACGACAAATTCAGCCATACATCGGCAAATGGAGATAGAAGAATGTCAGAACAATTA
CATAAAACGGCACTTTACGA

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator XRE Family; Transcriptional Regulator HTH_3 Family; Helix-Turn-Helix Family; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator Protein; Transcriptional Regulator Xre Family; XRE Family-Like Protein; Transcriptional Regulator XRE Family With Cupin Sensor; Cupin 2 Domain-Containing Protein; HTH_3family Transcriptional Regulator; Helix-Turn-Helix Transcriptional Regulator; Cro/CI Family Transcriptional Regulator

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MINEHKERYVSAEKINMQEAKIVKVEKNNEEQPIAPLDLGQRLKDIRIQLGLTLEEASKRTGLARSTLSKIENEQISPTF
QALQKLATGLDIDIPQIFEPPKTKGAAGRRDITLAEQGKPHPTATYEHELLATQLSNKKMVPFKSRIRARDFDAYAEWVR
HDGEEFLLVLEGEVCFYSEFYEPVNLMVGDSVYYDASMGHVLISISKEDAQILWVTAK

Sequences:

>Translated_218_residues
MINEHKERYVSAEKINMQEAKIVKVEKNNEEQPIAPLDLGQRLKDIRIQLGLTLEEASKRTGLARSTLSKIENEQISPTF
QALQKLATGLDIDIPQIFEPPKTKGAAGRRDITLAEQGKPHPTATYEHELLATQLSNKKMVPFKSRIRARDFDAYAEWVR
HDGEEFLLVLEGEVCFYSEFYEPVNLMVGDSVYYDASMGHVLISISKEDAQILWVTAK
>Mature_218_residues
MINEHKERYVSAEKINMQEAKIVKVEKNNEEQPIAPLDLGQRLKDIRIQLGLTLEEASKRTGLARSTLSKIENEQISPTF
QALQKLATGLDIDIPQIFEPPKTKGAAGRRDITLAEQGKPHPTATYEHELLATQLSNKKMVPFKSRIRARDFDAYAEWVR
HDGEEFLLVLEGEVCFYSEFYEPVNLMVGDSVYYDASMGHVLISISKEDAQILWVTAK

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24761; Mature: 24761

Theoretical pI: Translated: 5.42; Mature: 5.42

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINEHKERYVSAEKINMQEAKIVKVEKNNEEQPIAPLDLGQRLKDIRIQLGLTLEEASKR
CCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHEEEEECCCHHHHHHH
TGLARSTLSKIENEQISPTFQALQKLATGLDIDIPQIFEPPKTKGAAGRRDITLAEQGKP
CCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCEEECCCCCC
HPTATYEHELLATQLSNKKMVPFKSRIRARDFDAYAEWVRHDGEEFLLVLEGEVCFYSEF
CCCCCHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHCCCCEEEEEEECCEEEEHHH
YEPVNLMVGDSVYYDASMGHVLISISKEDAQILWVTAK
CCCEEEEECCCEEEECCCCEEEEEEECCCCEEEEEEEC
>Mature Secondary Structure
MINEHKERYVSAEKINMQEAKIVKVEKNNEEQPIAPLDLGQRLKDIRIQLGLTLEEASKR
CCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHEEEEECCCHHHHHHH
TGLARSTLSKIENEQISPTFQALQKLATGLDIDIPQIFEPPKTKGAAGRRDITLAEQGKP
CCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCEEECCCCCC
HPTATYEHELLATQLSNKKMVPFKSRIRARDFDAYAEWVRHDGEEFLLVLEGEVCFYSEF
CCCCCHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHCCCCEEEEEEECCEEEEHHH
YEPVNLMVGDSVYYDASMGHVLISISKEDAQILWVTAK
CCCEEEEECCCEEEECCCCEEEEEEECCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA