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The map label for this gene is ydaM [H]

Identifier: 59713875

GI number: 59713875

Start: 768231

End: 769550

Strand: Reverse

Name: ydaM [H]

Synonym: VF_A0692

Alternate gene names: 59713875

Gene position: 769550-768231 (Counterclockwise)

Preceding gene: 59713878

Following gene: 59713874

Centisome position: 57.85

GC content: 33.56

Gene sequence:

>1320_bases
ATGACGATGCTAAGACGATTAATGTTGCCACAGTTAAAAAGCTATATTTTTATTATTTTGAAAATGTGGACTTTGATCTT
TTGCGTATGTTTAATTTGCTATTTCTTCTTCAATATCATTTCAGTGAATCGATTAGAGCGTGAAATTGTAGATGACTATA
AAAGTGTCTATTCGATAAGTCGACGTTTCTCATCTTATTATAATAATGCAACAGCTATCACATTAGATGAAGGGCGTTAT
TTTAGGAATGATGTCACTGTTGTTGTTACTCGAGATACAGAAGTTAAGGTTTTATCTGAAGGGATAAGTAAATTACGAAC
TGAGTTAGAGAAACTTATTGGTGATAATTTATGGACAATCGCTGTCTTCCAGAACCCATCGAGTTATTTTCATTTAGATC
CGATCAGAGATAGTTATGAGCAATTTTATGAGAAGATAGAGGAAGATAACGTTATCTCACACATTGTAGATAATGAAAAT
TTAAAACAAACCTATCAATCTTTTTATGGTTGTAACCTGAAGTTGACGGAAAAATACATAGAAGATGGTACGAGTGAGAA
TATTCGCTCGATATATTATCCTATCTATAATAAACGACACTTAGATGCACTGTTAGTCGTTGATATTAAAGCATCACTTT
TACATGAGAGAATAGAGCACTATAACAAAATCAAAAATATGGTTGTGAACAGTCAAAACAAAAATAATTTATATCAAAAA
TCGGCTTATCTCCCATGTTCTGAGTTAGACCCATTTACATTAGGGATAAACCTTGTTGATTTAATAAAGAAAATAATTTT
TCCTTCGTTGTTCATTACCTTAGCTTTGTTTGCAATTGGCTATAATGTAAAGCGCAGCAAGTTTTTGTTGCAATATGATA
CGATGACAGGGTTTTATCGCCGTGACTTTTATGAAAAACGCCTGAAAAAAATGAAGGCATTTTCATTGTTGATTATTGAT
ATAGACAACTTCAAACAAATTAACGATACCTATGGTCATAAGAAAGGTGATGAAGTCATTCAGCAAATTGCGCAACGTAT
TTTAGCCTCAGTAAGAAGTAACCAAGATTATTGTATTCGTTGGGGAGGAGAGGAGTTTATCATTTTGTTGGACTCCGTTA
GTGTTACGAATTCAGAAGAAAAAGCTGAGAGGATACGATCAGCGATAGAAAAAGAATTAATTGCAGATCTGCATGTAACA
GTATCAATTGGTGGTGTTGTAGATGATGACACGACGTTTTCAGATGCATACAAACGTGCCGATGCTGCTCTATATCAATC
TAAGAATAACGGACGAAACCGTGTCACTATGGCAAATTGA

Upstream 100 bases:

>100_bases
TAGGCTTTCTCTAATTGGAGACAATGTCTCACTTTATAAAAAACAAAGATTGATTCCTTTTATTGTTGCTATATATTTCG
CACCTTTTACTACTCAAAGA

Downstream 100 bases:

>100_bases
ATATTGAGTGTGTCTTGCTTGTTGACATCATAAGTTGCGCAGACAAGAATGTCAGTGGATTAAAATTTCAACAAGTAAGG
CTTATTATTATGACGCATCC

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 438

Protein sequence:

>439_residues
MTMLRRLMLPQLKSYIFIILKMWTLIFCVCLICYFFFNIISVNRLEREIVDDYKSVYSISRRFSSYYNNATAITLDEGRY
FRNDVTVVVTRDTEVKVLSEGISKLRTELEKLIGDNLWTIAVFQNPSSYFHLDPIRDSYEQFYEKIEEDNVISHIVDNEN
LKQTYQSFYGCNLKLTEKYIEDGTSENIRSIYYPIYNKRHLDALLVVDIKASLLHERIEHYNKIKNMVVNSQNKNNLYQK
SAYLPCSELDPFTLGINLVDLIKKIIFPSLFITLALFAIGYNVKRSKFLLQYDTMTGFYRRDFYEKRLKKMKAFSLLIID
IDNFKQINDTYGHKKGDEVIQQIAQRILASVRSNQDYCIRWGGEEFIILLDSVSVTNSEEKAERIRSAIEKELIADLHVT
VSIGGVVDDDTTFSDAYKRADAALYQSKNNGRNRVTMAN

Sequences:

>Translated_439_residues
MTMLRRLMLPQLKSYIFIILKMWTLIFCVCLICYFFFNIISVNRLEREIVDDYKSVYSISRRFSSYYNNATAITLDEGRY
FRNDVTVVVTRDTEVKVLSEGISKLRTELEKLIGDNLWTIAVFQNPSSYFHLDPIRDSYEQFYEKIEEDNVISHIVDNEN
LKQTYQSFYGCNLKLTEKYIEDGTSENIRSIYYPIYNKRHLDALLVVDIKASLLHERIEHYNKIKNMVVNSQNKNNLYQK
SAYLPCSELDPFTLGINLVDLIKKIIFPSLFITLALFAIGYNVKRSKFLLQYDTMTGFYRRDFYEKRLKKMKAFSLLIID
IDNFKQINDTYGHKKGDEVIQQIAQRILASVRSNQDYCIRWGGEEFIILLDSVSVTNSEEKAERIRSAIEKELIADLHVT
VSIGGVVDDDTTFSDAYKRADAALYQSKNNGRNRVTMAN
>Mature_438_residues
TMLRRLMLPQLKSYIFIILKMWTLIFCVCLICYFFFNIISVNRLEREIVDDYKSVYSISRRFSSYYNNATAITLDEGRYF
RNDVTVVVTRDTEVKVLSEGISKLRTELEKLIGDNLWTIAVFQNPSSYFHLDPIRDSYEQFYEKIEEDNVISHIVDNENL
KQTYQSFYGCNLKLTEKYIEDGTSENIRSIYYPIYNKRHLDALLVVDIKASLLHERIEHYNKIKNMVVNSQNKNNLYQKS
AYLPCSELDPFTLGINLVDLIKKIIFPSLFITLALFAIGYNVKRSKFLLQYDTMTGFYRRDFYEKRLKKMKAFSLLIIDI
DNFKQINDTYGHKKGDEVIQQIAQRILASVRSNQDYCIRWGGEEFIILLDSVSVTNSEEKAERIRSAIEKELIADLHVTV
SIGGVVDDDTTFSDAYKRADAALYQSKNNGRNRVTMAN

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=158, Percent_Identity=43.0379746835443, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1787262, Length=169, Percent_Identity=34.3195266272189, Blast_Score=101, Evalue=8e-23,
Organism=Escherichia coli, GI145693134, Length=166, Percent_Identity=37.3493975903614, Blast_Score=101, Evalue=1e-22,
Organism=Escherichia coli, GI87081974, Length=357, Percent_Identity=28.8515406162465, Blast_Score=95, Evalue=8e-21,
Organism=Escherichia coli, GI87082007, Length=201, Percent_Identity=35.8208955223881, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1787802, Length=186, Percent_Identity=31.7204301075269, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1786584, Length=190, Percent_Identity=28.4210526315789, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1788381, Length=160, Percent_Identity=31.875, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787816, Length=153, Percent_Identity=30.718954248366, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1788085, Length=182, Percent_Identity=29.1208791208791, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1787056, Length=177, Percent_Identity=27.683615819209, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1788956, Length=154, Percent_Identity=33.1168831168831, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787541, Length=162, Percent_Identity=27.1604938271605, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI87081977, Length=156, Percent_Identity=32.6923076923077, Blast_Score=66, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 51328; Mature: 51196

Theoretical pI: Translated: 7.81; Mature: 7.81

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMLRRLMLPQLKSYIFIILKMWTLIFCVCLICYFFFNIISVNRLEREIVDDYKSVYSIS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRFSSYYNNATAITLDEGRYFRNDVTVVVTRDTEVKVLSEGISKLRTELEKLIGDNLWTI
HHHHHHHCCCEEEEECCCCEEECCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCEEEE
AVFQNPSSYFHLDPIRDSYEQFYEKIEEDNVISHIVDNENLKQTYQSFYGCNLKLTEKYI
EEEECCCCCEECCCHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHCCCEEEHHHHH
EDGTSENIRSIYYPIYNKRHLDALLVVDIKASLLHERIEHYNKIKNMVVNSQNKNNLYQK
CCCCCCCHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
SAYLPCSELDPFTLGINLVDLIKKIIFPSLFITLALFAIGYNVKRSKFLLQYDTMTGFYR
HCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEEEECCHHHHHH
RDFYEKRLKKMKAFSLLIIDIDNFKQINDTYGHKKGDEVIQQIAQRILASVRSNQDYCIR
HHHHHHHHHHHHHHEEEEEECCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
WGGEEFIILLDSVSVTNSEEKAERIRSAIEKELIADLHVTVSIGGVVDDDTTFSDAYKRA
ECCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHEEEEEEECCEECCCCCHHHHHHHH
DAALYQSKNNGRNRVTMAN
HHHHHHCCCCCCCEEEECC
>Mature Secondary Structure 
TMLRRLMLPQLKSYIFIILKMWTLIFCVCLICYFFFNIISVNRLEREIVDDYKSVYSIS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRFSSYYNNATAITLDEGRYFRNDVTVVVTRDTEVKVLSEGISKLRTELEKLIGDNLWTI
HHHHHHHCCCEEEEECCCCEEECCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCEEEE
AVFQNPSSYFHLDPIRDSYEQFYEKIEEDNVISHIVDNENLKQTYQSFYGCNLKLTEKYI
EEEECCCCCEECCCHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHCCCEEEHHHHH
EDGTSENIRSIYYPIYNKRHLDALLVVDIKASLLHERIEHYNKIKNMVVNSQNKNNLYQK
CCCCCCCHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
SAYLPCSELDPFTLGINLVDLIKKIIFPSLFITLALFAIGYNVKRSKFLLQYDTMTGFYR
HCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEEEECCHHHHHH
RDFYEKRLKKMKAFSLLIIDIDNFKQINDTYGHKKGDEVIQQIAQRILASVRSNQDYCIR
HHHHHHHHHHHHHHEEEEEECCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
WGGEEFIILLDSVSVTNSEEKAERIRSAIEKELIADLHVTVSIGGVVDDDTTFSDAYKRA
ECCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHEEEEEEECCEECCCCCHHHHHHHH
DAALYQSKNNGRNRVTMAN
HHHHHHCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]