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The map label for this gene is yiaD [H]

Identifier: 59713771

GI number: 59713771

Start: 671775

End: 672329

Strand: Reverse

Name: yiaD [H]

Synonym: VF_A0588

Alternate gene names: 59713771

Gene position: 672329-671775 (Counterclockwise)

Preceding gene: 59713772

Following gene: 59713770

Centisome position: 50.54

GC content: 37.48

Gene sequence:

>555_bases
ATGAAAAAACAGCTACTTGGAATTATCATATCAGCAAGTTTATTAATGGGGTGCCAGAGCACATCAGATGATGAAATGGC
AGATATTGCAGAAACACCAACCGTTGCGTCATTTGTTGATTACCATAATGAACAGCTACAGCAATTTGTTACAGAAGATA
TTGGCAGTGTTGCTCAAACAAATGAAGAGATTATCATTTTACTAAATGGTGATAAGAGCTTCGATTCGGGCAGTATAGAA
ATAAAAAATGAGAGCAAACTTGTACTATCACAGTTAGCTAAATTACTGAATGATAAACCAGAGTCAGAAGTTTTTATTGC
AGGTCATACTGACAGCCGTGGCAGCAAAAAATTCAATATGTCTCTCTCAAATCAACGTGCTGATTCTGTTCTGGCTTTAC
TAGAAGAAAATGGTGTTGATGGAAATCGAATTAATACCTATGGTTTTGGTGAATCAGAGCCCATTGCTACTAACATAAAT
GCAGAAGGGCGCAAAAAGAACCGCCGTATCGAGATCAGAATAACGCCAATCACTGAGCTCTTTGACGAAGAATAA

Upstream 100 bases:

>100_bases
TTCAAAAGTAAATGAAGTGACTCGATTTCATTTTTACTGAGTGAGTAACTGTATAAGAAGTTTGATAAATTGTTCTTAGT
TTGGACTAGGGATACTTATA

Downstream 100 bases:

>100_bases
TCTCAGTTTATTAGAGTCGATCTACTTAAAAATTAACTCTCTCATGTATAATAAGCCTTATTTCAAAAAGGAAAATGAAA
TGGGGCTTTTTTCACGTCTA

Product: OmpA family domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MKKQLLGIIISASLLMGCQSTSDDEMADIAETPTVASFVDYHNEQLQQFVTEDIGSVAQTNEEIIILLNGDKSFDSGSIE
IKNESKLVLSQLAKLLNDKPESEVFIAGHTDSRGSKKFNMSLSNQRADSVLALLEENGVDGNRINTYGFGESEPIATNIN
AEGRKKNRRIEIRITPITELFDEE

Sequences:

>Translated_184_residues
MKKQLLGIIISASLLMGCQSTSDDEMADIAETPTVASFVDYHNEQLQQFVTEDIGSVAQTNEEIIILLNGDKSFDSGSIE
IKNESKLVLSQLAKLLNDKPESEVFIAGHTDSRGSKKFNMSLSNQRADSVLALLEENGVDGNRINTYGFGESEPIATNIN
AEGRKKNRRIEIRITPITELFDEE
>Mature_184_residues
MKKQLLGIIISASLLMGCQSTSDDEMADIAETPTVASFVDYHNEQLQQFVTEDIGSVAQTNEEIIILLNGDKSFDSGSIE
IKNESKLVLSQLAKLLNDKPESEVFIAGHTDSRGSKKFNMSLSNQRADSVLALLEENGVDGNRINTYGFGESEPIATNIN
AEGRKKNRRIEIRITPITELFDEE

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=140, Percent_Identity=37.8571428571429, Blast_Score=103, Evalue=7e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 20310; Mature: 20310

Theoretical pI: Translated: 4.30; Mature: 4.30

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKQLLGIIISASLLMGCQSTSDDEMADIAETPTVASFVDYHNEQLQQFVTEDIGSVAQT
CCHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
NEEIIILLNGDKSFDSGSIEIKNESKLVLSQLAKLLNDKPESEVFIAGHTDSRGSKKFNM
CCCEEEEECCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEEEEE
SLSNQRADSVLALLEENGVDGNRINTYGFGESEPIATNINAEGRKKNRRIEIRITPITEL
ECCCCHHHHHHHHHHHCCCCCCCEEECCCCCCCCEEECCCCCCCCCCCEEEEEEECHHHH
FDEE
CCCC
>Mature Secondary Structure
MKKQLLGIIISASLLMGCQSTSDDEMADIAETPTVASFVDYHNEQLQQFVTEDIGSVAQT
CCHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
NEEIIILLNGDKSFDSGSIEIKNESKLVLSQLAKLLNDKPESEVFIAGHTDSRGSKKFNM
CCCEEEEECCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEEEEE
SLSNQRADSVLALLEENGVDGNRINTYGFGESEPIATNINAEGRKKNRRIEIRITPITEL
ECCCCHHHHHHHHHHHCCCCCCCEEECCCCCCCCEEECCCCCCCCCCCEEEEEEECHHHH
FDEE
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]