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The map label for this gene is orfU

Identifier: 59713761

GI number: 59713761

Start: 661373

End: 662578

Strand: Reverse

Name: orfU

Synonym: VF_A0578

Alternate gene names: NA

Gene position: 662578-661373 (Counterclockwise)

Preceding gene: 172087808

Following gene: 59713760

Centisome position: 49.81

GC content: 35.24

Gene sequence:

>1206_bases
ATGTTTGTATTTTTATTCTTACTTTCTTTTTTAAGTACACCTGCGCTTTCTTCTACAAATCCTTACGGCCTTTGTATTTC
TGATTCTATTTTTAACAAAGATATTTATATTTCAGCTAATGATATCAATGCCGAAAAGTTTCCAAGTAAGCTGTGCCATC
AAGACTGCCAAGCAAATATTTATCATGTTCCAACAGTTTCCCATGTTCCTCCTCATTCAATGGATCAACTTAACTGGTTT
CAGTTTCAATATAAAAGAACGGGGGCTTCTTGTGGAGAAATACCAGAATGTGACTTGAATTCAACGCTATCACTTTCTTG
GAAACAATCTGATTTTGGTGATTTCCCTAATTATTGCTCTGGAAAGTGTTTATTTACTCCTACTTTTTTGCCAGCTTGCG
CTAACGGTTTATGCTCTGGCGATTTTAAAGCCCTAGGTAAATCCTGTGACGCTGAAGGCTTTATTCAGGGCGGTGATACT
GGCGGCGGCTCTGGTGGTGACGGTGGGGGTTCTGGTGGTGATGGCGGCGGTAGCGATTCTAATGGTGTATTTTCTGCTCA
AGATTCTGCGAATATATCAAAAACGTTATCATATGCAGCTTCTATAGATGTAAATCTACGTGAATCTATGGATAGAAATA
CACAACGATATATTCAAATGAGCGATCAACTTTCTGGTTTTCATTCTTCTGATAATAAAAACTTTCTTCAGCTTAATGAT
AAAATTGATAACCTCTCTCAAAACCTTGAAATGACTAATTCAAATATCAATTATAATCTTCAAGATATTAACGCTTCGAT
TAAGCTGATTAATGACAATATGAACTCTGGGAGCGGCGGCTCTGGGAGTGGAAAAGATTACACAAGTATTCTTAATTCAA
TTAAATCAGAAATAGGCGGATTAGGCTCTTTAGTTATGGGTAGCTGTACTCAAGAATCGTGCTCTATTCCTATTCAAACT
GCATTAAATAGTTATGAGCAAACGAAAATTAAATTTAAAAATGAAATTGAATCGTTAATATCAAAATCAAAAGAGCATGA
GTTTATTGGTCATGCATCCATACCTTCGTTCTGTAGTTATATCGATGCATTTGATTATAATTTCTGTTTGGATTTTTCCG
TATTTAATGAGCATCTGGATTTAATTAGAAAGATATTACTTGCTGCGGCTTATATCTTTGCAGCTATGATTATATTTTTA
AGGTAG

Upstream 100 bases:

>100_bases
TGTTGGCCTGTTTTCATCTGGTGTTGTTATTACTGGGTTTATATCAGGTCTTTATTTAGTTTAATTAATAGGAAGGGGCT
TCGGCCCCTTTGTTGATCTT

Downstream 100 bases:

>100_bases
CGCTATATGTTGGATTATATTTACTCTTGGTTTGTTGATGGTGTGGCTTTTTTAGTTATTGAATTAGCCGAGATGTTTTT
AGAAAGCAAATTATTTATTA

Product: OrfU

Products: NA

Alternate protein names: OrfU [H]

Number of amino acids: Translated: 401; Mature: 401

Protein sequence:

>401_residues
MFVFLFLLSFLSTPALSSTNPYGLCISDSIFNKDIYISANDINAEKFPSKLCHQDCQANIYHVPTVSHVPPHSMDQLNWF
QFQYKRTGASCGEIPECDLNSTLSLSWKQSDFGDFPNYCSGKCLFTPTFLPACANGLCSGDFKALGKSCDAEGFIQGGDT
GGGSGGDGGGSGGDGGGSDSNGVFSAQDSANISKTLSYAASIDVNLRESMDRNTQRYIQMSDQLSGFHSSDNKNFLQLND
KIDNLSQNLEMTNSNINYNLQDINASIKLINDNMNSGSGGSGSGKDYTSILNSIKSEIGGLGSLVMGSCTQESCSIPIQT
ALNSYEQTKIKFKNEIESLISKSKEHEFIGHASIPSFCSYIDAFDYNFCLDFSVFNEHLDLIRKILLAAAYIFAAMIIFL
R

Sequences:

>Translated_401_residues
MFVFLFLLSFLSTPALSSTNPYGLCISDSIFNKDIYISANDINAEKFPSKLCHQDCQANIYHVPTVSHVPPHSMDQLNWF
QFQYKRTGASCGEIPECDLNSTLSLSWKQSDFGDFPNYCSGKCLFTPTFLPACANGLCSGDFKALGKSCDAEGFIQGGDT
GGGSGGDGGGSGGDGGGSDSNGVFSAQDSANISKTLSYAASIDVNLRESMDRNTQRYIQMSDQLSGFHSSDNKNFLQLND
KIDNLSQNLEMTNSNINYNLQDINASIKLINDNMNSGSGGSGSGKDYTSILNSIKSEIGGLGSLVMGSCTQESCSIPIQT
ALNSYEQTKIKFKNEIESLISKSKEHEFIGHASIPSFCSYIDAFDYNFCLDFSVFNEHLDLIRKILLAAAYIFAAMIIFL
R
>Mature_401_residues
MFVFLFLLSFLSTPALSSTNPYGLCISDSIFNKDIYISANDINAEKFPSKLCHQDCQANIYHVPTVSHVPPHSMDQLNWF
QFQYKRTGASCGEIPECDLNSTLSLSWKQSDFGDFPNYCSGKCLFTPTFLPACANGLCSGDFKALGKSCDAEGFIQGGDT
GGGSGGDGGGSGGDGGGSDSNGVFSAQDSANISKTLSYAASIDVNLRESMDRNTQRYIQMSDQLSGFHSSDNKNFLQLND
KIDNLSQNLEMTNSNINYNLQDINASIKLINDNMNSGSGGSGSGKDYTSILNSIKSEIGGLGSLVMGSCTQESCSIPIQT
ALNSYEQTKIKFKNEIESLISKSKEHEFIGHASIPSFCSYIDAFDYNFCLDFSVFNEHLDLIRKILLAAAYIFAAMIIFL
R

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43552; Mature: 43552

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVFLFLLSFLSTPALSSTNPYGLCISDSIFNKDIYISANDINAEKFPSKLCHQDCQANI
CHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCE
YHVPTVSHVPPHSMDQLNWFQFQYKRTGASCGEIPECDLNSTLSLSWKQSDFGDFPNYCS
EECCCCCCCCCCCCCCCCHHEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC
GKCLFTPTFLPACANGLCSGDFKALGKSCDAEGFIQGGDTGGGSGGDGGGSGGDGGGSDS
CCEEECCCHHHHHHCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
NGVFSAQDSANISKTLSYAASIDVNLRESMDRNTQRYIQMSDQLSGFHSSDNKNFLQLND
CCEEECCCCCCHHHHHHHHHEECCCHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEECC
KIDNLSQNLEMTNSNINYNLQDINASIKLINDNMNSGSGGSGSGKDYTSILNSIKSEIGG
HHHHHHHHHEECCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCC
LGSLVMGSCTQESCSIPIQTALNSYEQTKIKFKNEIESLISKSKEHEFIGHASIPSFCSY
CHHHHHCCCCHHHCCCCHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
IDAFDYNFCLDFSVFNEHLDLIRKILLAAAYIFAAMIIFLR
HHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFVFLFLLSFLSTPALSSTNPYGLCISDSIFNKDIYISANDINAEKFPSKLCHQDCQANI
CHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCE
YHVPTVSHVPPHSMDQLNWFQFQYKRTGASCGEIPECDLNSTLSLSWKQSDFGDFPNYCS
EECCCCCCCCCCCCCCCCHHEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC
GKCLFTPTFLPACANGLCSGDFKALGKSCDAEGFIQGGDTGGGSGGDGGGSGGDGGGSDS
CCEEECCCHHHHHHCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
NGVFSAQDSANISKTLSYAASIDVNLRESMDRNTQRYIQMSDQLSGFHSSDNKNFLQLND
CCEEECCCCCCHHHHHHHHHEECCCHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEECC
KIDNLSQNLEMTNSNINYNLQDINASIKLINDNMNSGSGGSGSGKDYTSILNSIKSEIGG
HHHHHHHHHEECCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCC
LGSLVMGSCTQESCSIPIQTALNSYEQTKIKFKNEIESLISKSKEHEFIGHASIPSFCSY
CHHHHHCCCCHHHCCCCHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
IDAFDYNFCLDFSVFNEHLDLIRKILLAAAYIFAAMIIFLR
HHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8389476; 10952301 [H]