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The map label for this gene is yqjA [H]

Identifier: 59713654

GI number: 59713654

Start: 542082

End: 542747

Strand: Reverse

Name: yqjA [H]

Synonym: VF_A0471

Alternate gene names: 59713654

Gene position: 542747-542082 (Counterclockwise)

Preceding gene: 59713665

Following gene: 59713644

Centisome position: 40.8

GC content: 37.39

Gene sequence:

>666_bases
ATGTTTGATTCATTTATTTCGATTCTAACGGCTTTATGGCAACAAGATTTCACAATTCTACAAAACCCAGCAAGTATGAC
GATGATCTACTTTTGTTTGATTCTATTTATTTGGTTAGAAAGTGCTTTTATTCCAGCTGCACCACTACCTTGCGATAGTG
TTGTTATTCTTGCAGGTTCTCTAGCTGCTGCTAATGTAATTAGCTACCCTGTAATTGTTGCTGGTCTTATCATGGCCGCG
GCAATTGGTAGTCAATTGGCTTTTATACAAGGTCGTTGGTTACATAAATTTCCAACAATTCAGAAATGGATTAATGCAGT
TCCACCACACAGATTACAGACAGTTGACTCTTTGTTAACTAAACATGGGCTAATTGCTCTTTTTGTAGCTCGTTTTATTC
CTGTTGTTCGCCCTCTTTTACCGTTAATGATGGGACTACGAATGCAACAAGCAGCTCGCTTCCATTATTTTGCTTGGATG
AGCGCTATTATTTGGATTTTATTACTAACTGGTTTCGGTTATTCATTATCATTTTTACCGGAAAAGCTGTCGAAATATAT
CACCATGGCACTAATGGCAGCACCAGTCATCACACTGGCGATTGCAGTATGTAGTTTTATCAGTGGTTACTGTTTAAAAA
AATACCGTCGTAAAAAAATCTGTTAA

Upstream 100 bases:

>100_bases
ATGACAGTGAAAATTCTTAGTGACTTTATCTATCACTTACCTTACTCTCGACCTATCTGTCACAACAAGTTTCGGCTTAA
TTTTCGTCTGGAGAATGGCG

Downstream 100 bases:

>100_bases
ATTAATTCGATATAAAAAGCCCCTAACTCATACAAGTTAGGGGCTTTTTTATTTTATCGATGAAAGGTAACAGCTACGAG
TTATACGTTGTCGATGATAC

Product: inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MFDSFISILTALWQQDFTILQNPASMTMIYFCLILFIWLESAFIPAAPLPCDSVVILAGSLAAANVISYPVIVAGLIMAA
AIGSQLAFIQGRWLHKFPTIQKWINAVPPHRLQTVDSLLTKHGLIALFVARFIPVVRPLLPLMMGLRMQQAARFHYFAWM
SAIIWILLLTGFGYSLSFLPEKLSKYITMALMAAPVITLAIAVCSFISGYCLKKYRRKKIC

Sequences:

>Translated_221_residues
MFDSFISILTALWQQDFTILQNPASMTMIYFCLILFIWLESAFIPAAPLPCDSVVILAGSLAAANVISYPVIVAGLIMAA
AIGSQLAFIQGRWLHKFPTIQKWINAVPPHRLQTVDSLLTKHGLIALFVARFIPVVRPLLPLMMGLRMQQAARFHYFAWM
SAIIWILLLTGFGYSLSFLPEKLSKYITMALMAAPVITLAIAVCSFISGYCLKKYRRKKIC
>Mature_221_residues
MFDSFISILTALWQQDFTILQNPASMTMIYFCLILFIWLESAFIPAAPLPCDSVVILAGSLAAANVISYPVIVAGLIMAA
AIGSQLAFIQGRWLHKFPTIQKWINAVPPHRLQTVDSLLTKHGLIALFVARFIPVVRPLLPLMMGLRMQQAARFHYFAWM
SAIIWILLLTGFGYSLSFLPEKLSKYITMALMAAPVITLAIAVCSFISGYCLKKYRRKKIC

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1789481, Length=174, Percent_Identity=44.2528735632184, Blast_Score=158, Evalue=2e-40,
Organism=Escherichia coli, GI1789384, Length=192, Percent_Identity=37.5, Blast_Score=145, Evalue=2e-36,
Organism=Escherichia coli, GI1788656, Length=154, Percent_Identity=25.974025974026, Blast_Score=61, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 24732; Mature: 24732

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDSFISILTALWQQDFTILQNPASMTMIYFCLILFIWLESAFIPAAPLPCDSVVILAGS
CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
LAAANVISYPVIVAGLIMAAAIGSQLAFIQGRWLHKFPTIQKWINAVPPHRLQTVDSLLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCHHHHHHHHCCCCHHHHHHHHHHH
KHGLIALFVARFIPVVRPLLPLMMGLRMQQAARFHYFAWMSAIIWILLLTGFGYSLSFLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
EKLSKYITMALMAAPVITLAIAVCSFISGYCLKKYRRKKIC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFDSFISILTALWQQDFTILQNPASMTMIYFCLILFIWLESAFIPAAPLPCDSVVILAGS
CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
LAAANVISYPVIVAGLIMAAAIGSQLAFIQGRWLHKFPTIQKWINAVPPHRLQTVDSLLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCHHHHHHHHCCCCHHHHHHHHHHH
KHGLIALFVARFIPVVRPLLPLMMGLRMQQAARFHYFAWMSAIIWILLLTGFGYSLSFLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
EKLSKYITMALMAAPVITLAIAVCSFISGYCLKKYRRKKIC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]