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The map label for this gene is ybjD [H]

Identifier: 59713578

GI number: 59713578

Start: 446935

End: 448569

Strand: Reverse

Name: ybjD [H]

Synonym: VF_A0395

Alternate gene names: 59713578

Gene position: 448569-446935 (Counterclockwise)

Preceding gene: 59713581

Following gene: 59713576

Centisome position: 33.72

GC content: 38.29

Gene sequence:

>1635_bases
ATGCTCTTAGAACGAATAGAAGTTTCAGGATTTCGAGGCATTAAACGCTTATCACTTTCTTTTGAACAACTCACCACTTT
GATAGGCGAAAATACATGGGGCAAGTCATCATTGCTTGATGCGCTTTCTATTGCCCTGCCCATTTCAGGCGAATTACATC
AATTTACACTTAAAGATTTTCACCAAGACCACTCTATTTCATACACTCAAGACCAACATATTCAAATCATTATTACTTGG
CAAACCACAGAAAAAAACGAACATAAAGCGGGTCGCTATAGAAAACTCTCCTCACTGTGGCAACATGATGCAAATAGCAA
TACACAACGTATTTACTATCGTGTAAGTGCGACAAATAATGATGGAAAGATAACTTCTTCAAGCTCATTTTTAGATAAAG
ATGGTAATGTGTTACGTTATCACCGTATTGAATGCTTGGTTTATGAGCTCATCAAGTTACATCCTGTTATTAGGATCCGA
GATTCACGCCGACTTAGCCCTGGCCCTTTTACTGATCACGTTCCCGATGATCGAATTGAGCGACGAATTAATAATACCTG
CCGACGCCTATTAACAGCTCCAGGGCAAGTAAGCAGTGGAGAAATAAAAAGCGCCTTACAATCAATGCAATCTCTCGTTG
ATCATTACTTTTCTTTTAGAAATCATAGACGACATGGTCAACATAAAGTGCGTGATGACTTATTCTTTGGACAAAAAGCA
GAAGGTGTTTCTTTAAACCAATTTGTGAATCAAAATCAAAGCAAGCAGACTAAATTATTATTATTAGGCTTACTTAATAC
CTACTTACGAGCAAAAGGACCGAATACATTAAAACAATCAGCACGACCTGTCATGATTGTAGAAGATCCAGAAGGTCGTC
TTCACCCTACACAATTAATTCAAGCATGGACATTACTCAACCACATTCCCATGCAAAAAATACTCACAACAAACAGCAGT
GAATTGCTTAGCGCCGTTCCATTATCATCCATAAGACGTTTAGTTAGGGAGTCTGATTCTACCTCTAGTTACGCCTTAAC
CCCGACAAGTTTATCTCGTGATGATTTGCGTCGAATTACGTTTCATATTCGATTTCAACGCTCTAATGCTTTATTTGCTC
GTTGTTGGCTACTTGTTGAAGGTGAAACTGAAGTATGGTTATTTAATGAAATGGCTCGAATTCTTGGTTATAACCTTGCC
GCTGAAGGAGTACAAATCATAGAGTTTGCTCAGTCAGGGTTAAAATCATTAATAAAAATGGCCAAAGCACTTCATATTGA
GTGGCATGTGGTTACTGATGGTGATCCAGCTGGGAAAAAATACGCCTTTGCAGTAAAAAACCAGCTCGAAAACGAACATG
AGCGTCACCGTTTAACAGAACTACCACATAAAGATATTGAGCATTATTTATATCATCACGGCTTTGAAGAGTTATTCAGA
ACACTATCAAATATTTCAGCCGATCAACCTGTTCCACCTAAAAAGATCATAGTAAAAACGTTAAAAAAATACGCAAAACC
GGATGTCGCATTAGCTATTGTGGAGCATTGCGAAGAAATGGGACCTGAGAGTATTCCTTTATTACTGCGATGGACATTAA
AACGTACGGTTACAATGGCAAAAGGACAAGGATAA

Upstream 100 bases:

>100_bases
TTATTCAAAAAAATCAATTCTATAATTGTGATATCCATAATGCTTTACTCTCGTTACATGCTATATAGTTACTTATACAA
GTATCTGATGAGGAAGTCAT

Downstream 100 bases:

>100_bases
AAAAACGCCAACAGCATACACTGTTGGCGTTTATGTTTTATAAAGAACTCTTATTTATTACGTCGTGCCGTTACTGAATC
AGCTAATTGACGAAGTACTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 544; Mature: 544

Protein sequence:

>544_residues
MLLERIEVSGFRGIKRLSLSFEQLTTLIGENTWGKSSLLDALSIALPISGELHQFTLKDFHQDHSISYTQDQHIQIIITW
QTTEKNEHKAGRYRKLSSLWQHDANSNTQRIYYRVSATNNDGKITSSSSFLDKDGNVLRYHRIECLVYELIKLHPVIRIR
DSRRLSPGPFTDHVPDDRIERRINNTCRRLLTAPGQVSSGEIKSALQSMQSLVDHYFSFRNHRRHGQHKVRDDLFFGQKA
EGVSLNQFVNQNQSKQTKLLLLGLLNTYLRAKGPNTLKQSARPVMIVEDPEGRLHPTQLIQAWTLLNHIPMQKILTTNSS
ELLSAVPLSSIRRLVRESDSTSSYALTPTSLSRDDLRRITFHIRFQRSNALFARCWLLVEGETEVWLFNEMARILGYNLA
AEGVQIIEFAQSGLKSLIKMAKALHIEWHVVTDGDPAGKKYAFAVKNQLENEHERHRLTELPHKDIEHYLYHHGFEELFR
TLSNISADQPVPPKKIIVKTLKKYAKPDVALAIVEHCEEMGPESIPLLLRWTLKRTVTMAKGQG

Sequences:

>Translated_544_residues
MLLERIEVSGFRGIKRLSLSFEQLTTLIGENTWGKSSLLDALSIALPISGELHQFTLKDFHQDHSISYTQDQHIQIIITW
QTTEKNEHKAGRYRKLSSLWQHDANSNTQRIYYRVSATNNDGKITSSSSFLDKDGNVLRYHRIECLVYELIKLHPVIRIR
DSRRLSPGPFTDHVPDDRIERRINNTCRRLLTAPGQVSSGEIKSALQSMQSLVDHYFSFRNHRRHGQHKVRDDLFFGQKA
EGVSLNQFVNQNQSKQTKLLLLGLLNTYLRAKGPNTLKQSARPVMIVEDPEGRLHPTQLIQAWTLLNHIPMQKILTTNSS
ELLSAVPLSSIRRLVRESDSTSSYALTPTSLSRDDLRRITFHIRFQRSNALFARCWLLVEGETEVWLFNEMARILGYNLA
AEGVQIIEFAQSGLKSLIKMAKALHIEWHVVTDGDPAGKKYAFAVKNQLENEHERHRLTELPHKDIEHYLYHHGFEELFR
TLSNISADQPVPPKKIIVKTLKKYAKPDVALAIVEHCEEMGPESIPLLLRWTLKRTVTMAKGQG
>Mature_544_residues
MLLERIEVSGFRGIKRLSLSFEQLTTLIGENTWGKSSLLDALSIALPISGELHQFTLKDFHQDHSISYTQDQHIQIIITW
QTTEKNEHKAGRYRKLSSLWQHDANSNTQRIYYRVSATNNDGKITSSSSFLDKDGNVLRYHRIECLVYELIKLHPVIRIR
DSRRLSPGPFTDHVPDDRIERRINNTCRRLLTAPGQVSSGEIKSALQSMQSLVDHYFSFRNHRRHGQHKVRDDLFFGQKA
EGVSLNQFVNQNQSKQTKLLLLGLLNTYLRAKGPNTLKQSARPVMIVEDPEGRLHPTQLIQAWTLLNHIPMQKILTTNSS
ELLSAVPLSSIRRLVRESDSTSSYALTPTSLSRDDLRRITFHIRFQRSNALFARCWLLVEGETEVWLFNEMARILGYNLA
AEGVQIIEFAQSGLKSLIKMAKALHIEWHVVTDGDPAGKKYAFAVKNQLENEHERHRLTELPHKDIEHYLYHHGFEELFR
TLSNISADQPVPPKKIIVKTLKKYAKPDVALAIVEHCEEMGPESIPLLLRWTLKRTVTMAKGQG

Specific function: Unknown

COG id: COG3593

COG function: function code L; Predicted ATP-dependent endonuclease of the OLD family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787102, Length=559, Percent_Identity=41.8604651162791, Blast_Score=422, Evalue=1e-119,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022602 [H]

Pfam domain/function: PF11398 DUF2813 [H]

EC number: NA

Molecular weight: Translated: 62435; Mature: 62435

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLERIEVSGFRGIKRLSLSFEQLTTLIGENTWGKSSLLDALSIALPISGELHQFTLKDF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
HQDHSISYTQDQHIQIIITWQTTEKNEHKAGRYRKLSSLWQHDANSNTQRIYYRVSATNN
CCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECC
DGKITSSSSFLDKDGNVLRYHRIECLVYELIKLHPVIRIRDSRRLSPGPFTDHVPDDRIE
CCCEECCCCCCCCCCCEEEHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCHHHHH
RRINNTCRRLLTAPGQVSSGEIKSALQSMQSLVDHYFSFRNHRRHGQHKVRDDLFFGQKA
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC
EGVSLNQFVNQNQSKQTKLLLLGLLNTYLRAKGPNTLKQSARPVMIVEDPEGRLHPTQLI
CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCEEEEECCCCCCCHHHHH
QAWTLLNHIPMQKILTTNSSELLSAVPLSSIRRLVRESDSTSSYALTPTSLSRDDLRRIT
HHHHHHHHCCHHHHHCCCHHHHHHHCCHHHHHHHHHCCCCCCCEEECCCCCCHHHHHEEE
FHIRFQRSNALFARCWLLVEGETEVWLFNEMARILGYNLAAEGVQIIEFAQSGLKSLIKM
EEEEEECCCCEEEEEEEEEECCCCEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
AKALHIEWHVVTDGDPAGKKYAFAVKNQLENEHERHRLTELPHKDIEHYLYHHGFEELFR
HHHHEEEEEEEECCCCCCCEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHH
TLSNISADQPVPPKKIIVKTLKKYAKPDVALAIVEHCEEMGPESIPLLLRWTLKRTVTMA
HHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC
KGQG
CCCC
>Mature Secondary Structure
MLLERIEVSGFRGIKRLSLSFEQLTTLIGENTWGKSSLLDALSIALPISGELHQFTLKDF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
HQDHSISYTQDQHIQIIITWQTTEKNEHKAGRYRKLSSLWQHDANSNTQRIYYRVSATNN
CCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECC
DGKITSSSSFLDKDGNVLRYHRIECLVYELIKLHPVIRIRDSRRLSPGPFTDHVPDDRIE
CCCEECCCCCCCCCCCEEEHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCHHHHH
RRINNTCRRLLTAPGQVSSGEIKSALQSMQSLVDHYFSFRNHRRHGQHKVRDDLFFGQKA
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC
EGVSLNQFVNQNQSKQTKLLLLGLLNTYLRAKGPNTLKQSARPVMIVEDPEGRLHPTQLI
CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCEEEEECCCCCCCHHHHH
QAWTLLNHIPMQKILTTNSSELLSAVPLSSIRRLVRESDSTSSYALTPTSLSRDDLRRIT
HHHHHHHHCCHHHHHCCCHHHHHHHCCHHHHHHHHHCCCCCCCEEECCCCCCHHHHHEEE
FHIRFQRSNALFARCWLLVEGETEVWLFNEMARILGYNLAAEGVQIIEFAQSGLKSLIKM
EEEEEECCCCEEEEEEEEEECCCCEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
AKALHIEWHVVTDGDPAGKKYAFAVKNQLENEHERHRLTELPHKDIEHYLYHHGFEELFR
HHHHEEEEEEEECCCCCCCEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHH
TLSNISADQPVPPKKIIVKTLKKYAKPDVALAIVEHCEEMGPESIPLLLRWTLKRTVTMA
HHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC
KGQG
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]