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The map label for this gene is psd [H]

Identifier: 59712938

GI number: 59712938

Start: 2620518

End: 2621381

Strand: Direct

Name: psd [H]

Synonym: VF_2331

Alternate gene names: 59712938

Gene position: 2620518-2621381 (Clockwise)

Preceding gene: 59712937

Following gene: 59712939

Centisome position: 90.44

GC content: 39.12

Gene sequence:

>864_bases
GTGTCAGATAATTTAAAGATTGGGTTACAATATCTAACTCCAAAACATGCACTTACTCGTTTAGCTGGCAAATTAGCATC
AGCAAAAATGGGATGGTTAACAACTGCTGTTATTAAGTGGTTTATCAAGCAATACAACGTAAATATGGATGAGGCTAAAA
ACCCAGATCCTGAAGCGTATTCAACATTTAATAACTTCTTCGTTCGTGAATTAGAAGATGGCGCTCGTCCTATTAATGAG
GATGATTCTGTTATTTCTCACCCTGCTGATGCTTGCGTTAGTCAATTTGGTCCAATTATGGACGGTAAATTAGTACAAGC
AAAAGGCCACGTATATTCTGCGCAAGAATTACTTGGTGGTGATGAAGCACTTGCTGCTGAATTTATGGGTGGTGAGTTCG
CAACGCTGTATTTATCACCAAGCGATTACCATCGTGTTCATATGCCTTGTGATGCAACGTTACGTAAAATGATTTATGTT
CCTGGTGATTTATTTTCAGTTAATCCATTAACGGCTGAAAACGTACCGAACTTATTTGCACGCAATGAACGTGTTGTTTG
TATTTTTGATACCGAGTTTGGTCCTATGGCTCAAATTCTGGTTGGTGCAACGATCGTTGGTAGTATTGAAACTACATGGG
CTGAAACCGTAACACCACCAACAGGTCCTGCGGTTAAAACATGGCACTACCCTCTTTCTGGTGACGACATGATTTGCTTT
AAGAAAGGTGAAGAAATGGGTCGCTTTAAGTTAGGTTCTACTGTAATTAACTTGTTTGCTCCTAACTCAATTAAATTTGA
TGACTCAATGGAAAATGGTACTCCTACGCGTATGGGTACACCATTTGCTCATATCGTAAAATAA

Upstream 100 bases:

>100_bases
AACAAAAAAGCCGATTTATAACCACAATAAACCTTGGGTTTAGCGACAATGTAAATATGTGGTAATATCCACAGCAAATG
ATAACTATTAGGCAAACAAC

Downstream 100 bases:

>100_bases
TCAAATTTTATTAAGAAATAATAAATAGCGAACAATATGTTCGCTATTTTTTTATCTTTAGATAGTCAGAATCAATTAAC
TCAATGGAATGAATGATGGG

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 286

Protein sequence:

>287_residues
MSDNLKIGLQYLTPKHALTRLAGKLASAKMGWLTTAVIKWFIKQYNVNMDEAKNPDPEAYSTFNNFFVRELEDGARPINE
DDSVISHPADACVSQFGPIMDGKLVQAKGHVYSAQELLGGDEALAAEFMGGEFATLYLSPSDYHRVHMPCDATLRKMIYV
PGDLFSVNPLTAENVPNLFARNERVVCIFDTEFGPMAQILVGATIVGSIETTWAETVTPPTGPAVKTWHYPLSGDDMICF
KKGEEMGRFKLGSTVINLFAPNSIKFDDSMENGTPTRMGTPFAHIVK

Sequences:

>Translated_287_residues
MSDNLKIGLQYLTPKHALTRLAGKLASAKMGWLTTAVIKWFIKQYNVNMDEAKNPDPEAYSTFNNFFVRELEDGARPINE
DDSVISHPADACVSQFGPIMDGKLVQAKGHVYSAQELLGGDEALAAEFMGGEFATLYLSPSDYHRVHMPCDATLRKMIYV
PGDLFSVNPLTAENVPNLFARNERVVCIFDTEFGPMAQILVGATIVGSIETTWAETVTPPTGPAVKTWHYPLSGDDMICF
KKGEEMGRFKLGSTVINLFAPNSIKFDDSMENGTPTRMGTPFAHIVK
>Mature_286_residues
SDNLKIGLQYLTPKHALTRLAGKLASAKMGWLTTAVIKWFIKQYNVNMDEAKNPDPEAYSTFNNFFVRELEDGARPINED
DSVISHPADACVSQFGPIMDGKLVQAKGHVYSAQELLGGDEALAAEFMGGEFATLYLSPSDYHRVHMPCDATLRKMIYVP
GDLFSVNPLTAENVPNLFARNERVVCIFDTEFGPMAQILVGATIVGSIETTWAETVTPPTGPAVKTWHYPLSGDDMICFK
KGEEMGRFKLGSTVINLFAPNSIKFDDSMENGTPTRMGTPFAHIVK

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI13489112, Length=300, Percent_Identity=31, Blast_Score=128, Evalue=5e-30,
Organism=Escherichia coli, GI1790604, Length=284, Percent_Identity=59.1549295774648, Blast_Score=349, Evalue=1e-97,
Organism=Caenorhabditis elegans, GI71980840, Length=286, Percent_Identity=32.5174825174825, Blast_Score=133, Evalue=1e-31,
Organism=Caenorhabditis elegans, GI71980843, Length=286, Percent_Identity=32.5174825174825, Blast_Score=133, Evalue=1e-31,
Organism=Saccharomyces cerevisiae, GI6321609, Length=292, Percent_Identity=28.4246575342466, Blast_Score=116, Evalue=5e-27,
Organism=Saccharomyces cerevisiae, GI6324160, Length=168, Percent_Identity=39.8809523809524, Blast_Score=93, Evalue=4e-20,
Organism=Drosophila melanogaster, GI24649526, Length=306, Percent_Identity=31.6993464052288, Blast_Score=129, Evalue=2e-30,
Organism=Drosophila melanogaster, GI24649528, Length=306, Percent_Identity=31.6993464052288, Blast_Score=129, Evalue=2e-30,
Organism=Drosophila melanogaster, GI24649524, Length=306, Percent_Identity=31.6993464052288, Blast_Score=129, Evalue=2e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR005221 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 31620; Mature: 31489

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDNLKIGLQYLTPKHALTRLAGKLASAKMGWLTTAVIKWFIKQYNVNMDEAKNPDPEAY
CCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHH
STFNNFFVRELEDGARPINEDDSVISHPADACVSQFGPIMDGKLVQAKGHVYSAQELLGG
HHHHHHHHHHHHHCCCCCCCCCCHHCCCHHHHHHHCCCCCCCEEEEECCCEEEHHHHHCC
DEALAAEFMGGEFATLYLSPSDYHRVHMPCDATLRKMIYVPGDLFSVNPLTAENVPNLFA
CHHHHHHHCCCCEEEEEECCCCCEEEECCHHHHHHHEEECCCCEEECCCCCCCCCCHHHH
RNERVVCIFDTEFGPMAQILVGATIVGSIETTWAETVTPPTGPAVKTWHYPLSGDDMICF
CCCEEEEEEECCCCHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCEEEECCCCCCCEEEE
KKGEEMGRFKLGSTVINLFAPNSIKFDDSMENGTPTRMGTPFAHIVK
ECCCCCCCEECCCCEEEEECCCCEECCCCCCCCCCCCCCCCHHHHCC
>Mature Secondary Structure 
SDNLKIGLQYLTPKHALTRLAGKLASAKMGWLTTAVIKWFIKQYNVNMDEAKNPDPEAY
CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHH
STFNNFFVRELEDGARPINEDDSVISHPADACVSQFGPIMDGKLVQAKGHVYSAQELLGG
HHHHHHHHHHHHHCCCCCCCCCCHHCCCHHHHHHHCCCCCCCEEEEECCCEEEHHHHHCC
DEALAAEFMGGEFATLYLSPSDYHRVHMPCDATLRKMIYVPGDLFSVNPLTAENVPNLFA
CHHHHHHHCCCCEEEEEECCCCCEEEECCHHHHHHHEEECCCCEEECCCCCCCCCCHHHH
RNERVVCIFDTEFGPMAQILVGATIVGSIETTWAETVTPPTGPAVKTWHYPLSGDDMICF
CCCEEEEEEECCCCHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCEEEECCCCCCCEEEE
KKGEEMGRFKLGSTVINLFAPNSIKFDDSMENGTPTRMGTPFAHIVK
ECCCCCCCEECCCCEEEEECCCCEECCCCCCCCCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA