Click here to switch to the map view.

The map label for this gene is pilN

Identifier: 59712903

GI number: 59712903

Start: 2578515

End: 2579081

Strand: Reverse

Name: pilN

Synonym: VF_2296

Alternate gene names: NA

Gene position: 2579081-2578515 (Counterclockwise)

Preceding gene: 59712904

Following gene: 59712902

Centisome position: 89.01

GC content: 37.04

Gene sequence:

>567_bases
ATGGCTTACCAAATAAACCTATTACCTTGGCGAGAAAAGCAGAGAGCAAGATATAAGCAACGTTTTATTGCATTACTTTG
TGCTGGGGTGACGCTATCTGTCGGTATTCAATGGGGGATTGCGCAATATTTAGAACAACAAGTTTCGATTCAGACACAAC
GTAAGCAATCGTTAGAAAAACATATCTCTTGGTTAAACAATGAATTAAAAGATCTTAACGAAGTTGGAAAGGAGCATGAA
GCGATATTAACTCGTCTTGATGTTGTCGAACAATTACAGCAGAACCGAAACAAAACCACTCAGTTATTGAACATTTTACC
CGACATCATTACTGAAGGTATTTATTTAAATAAAGTACGCATGCATGAAAGGGAAGTTGAGATTAAGGGATTCAGTGATA
GTAACTCTCGGCTAGCAAGTATGTTGGATAAATTAGAGCGTTCCTCTCAAATTACTTCAGTAGAAATGCACTCGATTATC
TCAGGGCAAAAAATATTTGGTCATGATGTCAGTAGTTTTGAAGTCTCGTTTAAATTACTTCCTCCAGTGAAAAAGGAACC
GTCGTAA

Upstream 100 bases:

>100_bases
TACTTTCTTTGTTTCAAACACCAAAGAAAAGAGTGGGTTCGTTTCATGAACAAAAAAATCAATACGCATCAGCTCTTGGA
TTGGCATTGAGAGGGATTGA

Downstream 100 bases:

>100_bases
TGGATTGGCGTGAATTAGATTTAGATGAAATTACGGAATGGCCGATTATTCCGCAGCTGTTAGTGATCTTGTTGTTGTGT
TTATGTATTCAAGGGGCTGG

Product: pili assembly protein PilN

Products: NA

Alternate protein names: Type IV Pilus Biogenesis Protein PilN; Type 4 Fimbrial Biogenesis Protein PilN; Type IV Pilus Assembly Protein PilN; Fimbrial Assembly Protein PilN; Tfp Pilus Assembly Protein PilN; Fimbrial Assembly; Fimbrial Assembly Protein; Periplasmic Sensor Signal Transduction Histidine Kinase; Tfp Pilus Assembly Protein; PilN Type IV Pilus Assembly Protein; Type IV Pilus Biogenesis Fimbrial Assembly; Fimbrial Assembly Membrane Protein; Pili Assembly Protein PilN; Type IV Fimbrial Biogenesis Protein PilN; Type 4 Fimbrial Biogenesis Protein; Type IV Pilus Biogenesis PilN; Type IV Pilus Assembly Protein Piln

Number of amino acids: Translated: 188; Mature: 187

Protein sequence:

>188_residues
MAYQINLLPWREKQRARYKQRFIALLCAGVTLSVGIQWGIAQYLEQQVSIQTQRKQSLEKHISWLNNELKDLNEVGKEHE
AILTRLDVVEQLQQNRNKTTQLLNILPDIITEGIYLNKVRMHEREVEIKGFSDSNSRLASMLDKLERSSQITSVEMHSII
SGQKIFGHDVSSFEVSFKLLPPVKKEPS

Sequences:

>Translated_188_residues
MAYQINLLPWREKQRARYKQRFIALLCAGVTLSVGIQWGIAQYLEQQVSIQTQRKQSLEKHISWLNNELKDLNEVGKEHE
AILTRLDVVEQLQQNRNKTTQLLNILPDIITEGIYLNKVRMHEREVEIKGFSDSNSRLASMLDKLERSSQITSVEMHSII
SGQKIFGHDVSSFEVSFKLLPPVKKEPS
>Mature_187_residues
AYQINLLPWREKQRARYKQRFIALLCAGVTLSVGIQWGIAQYLEQQVSIQTQRKQSLEKHISWLNNELKDLNEVGKEHEA
ILTRLDVVEQLQQNRNKTTQLLNILPDIITEGIYLNKVRMHEREVEIKGFSDSNSRLASMLDKLERSSQITSVEMHSIIS
GQKIFGHDVSSFEVSFKLLPPVKKEPS

Specific function: Unknown

COG id: COG3166

COG function: function code NU; Tfp pilus assembly protein PilN

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21742; Mature: 21611

Theoretical pI: Translated: 9.42; Mature: 9.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYQINLLPWREKQRARYKQRFIALLCAGVTLSVGIQWGIAQYLEQQVSIQTQRKQSLEK
CCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HISWLNNELKDLNEVGKEHEAILTRLDVVEQLQQNRNKTTQLLNILPDIITEGIYLNKVR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
MHEREVEIKGFSDSNSRLASMLDKLERSSQITSVEMHSIISGQKIFGHDVSSFEVSFKLL
HHHHHEEEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHCCCCCHHEEEEEEC
PPVKKEPS
CCCCCCCC
>Mature Secondary Structure 
AYQINLLPWREKQRARYKQRFIALLCAGVTLSVGIQWGIAQYLEQQVSIQTQRKQSLEK
CEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HISWLNNELKDLNEVGKEHEAILTRLDVVEQLQQNRNKTTQLLNILPDIITEGIYLNKVR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
MHEREVEIKGFSDSNSRLASMLDKLERSSQITSVEMHSIISGQKIFGHDVSSFEVSFKLL
HHHHHEEEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHCCCCCHHEEEEEEC
PPVKKEPS
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA