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The map label for this gene is gph [C]

Identifier: 59712894

GI number: 59712894

Start: 2569804

End: 2570487

Strand: Reverse

Name: gph [C]

Synonym: VF_2287

Alternate gene names: 59712894

Gene position: 2570487-2569804 (Counterclockwise)

Preceding gene: 59712895

Following gene: 59712893

Centisome position: 88.71

GC content: 42.69

Gene sequence:

>684_bases
ATGTTTGAAGATATCAAACTGATCGCTTTTGATTTAGATGGGACGCTACTTGATAGCGTTCCTGATTTAGCTCGAGCGGT
GGATCTTGCAATGCAAGACATGGGATACCCTCGCGTTACATTAGAGCAAGCATCTCATTGGATTGGTAATGGTGCAGATG
TACTCGTTTCTCGCGCGTTAAGTCAAAACTATATCGTGAAAGACGATCTTGATGCTGAATTAATAAAGCAAGCTCGTGCA
AGATTAGATCAACATTATCATGATGGCGGTCATCAACTTAGCCACCTCTATCCTGATGTCAAAGACACGTTAGAACGATT
GCATCAGCAAGGTTATACCTTGGCGTTGGTGACGAACAAACCGTCTCAATTTGTACCTGAACTTCTTGAGCAGCATCAGC
TTACTCACTTATTTAGTGAGGTGATTGGTGGTGATACGTTCGCCGAGAAGAAACCGAATCCTTTTGCGCTAAATTGGCTG
CTTGATAAACATGGTTTAACGGCGCCTCAAATGCTAATGGTCGGGGATTCTAAAAATGATATTCAAGCGGCTCAAGCTGC
CGGATGTCATAGCTTTGCACTGACTTATGGCTATAATCATGGCGAACCTATCTCAGATAGCCAACCTGATGTAGTTAGCG
ATGAATTTAAGTATTTATTAGCCGTGTTGAGTATGGCAAGATAG

Upstream 100 bases:

>100_bases
TGTTTGTTGCAGGTTCAGCTATCTTTAATCAACCAAACTACAAAGAAGTGATTGATGAAATGCGTGCTGAATTAGCAAAA
GTAAAAGGTAACTAAGATTC

Downstream 100 bases:

>100_bases
TATTCATTGATAAGTACAGTAACTATTAATGTTCAGGCTTATCAAACTATATAGAATAACCATTAAATGATCCCACAGTG
GATCATTTAATTTTTACAGT

Product: phosphoglycolate phosphatase

Products: NA

Alternate protein names: PGP; PGPase

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MFEDIKLIAFDLDGTLLDSVPDLARAVDLAMQDMGYPRVTLEQASHWIGNGADVLVSRALSQNYIVKDDLDAELIKQARA
RLDQHYHDGGHQLSHLYPDVKDTLERLHQQGYTLALVTNKPSQFVPELLEQHQLTHLFSEVIGGDTFAEKKPNPFALNWL
LDKHGLTAPQMLMVGDSKNDIQAAQAAGCHSFALTYGYNHGEPISDSQPDVVSDEFKYLLAVLSMAR

Sequences:

>Translated_227_residues
MFEDIKLIAFDLDGTLLDSVPDLARAVDLAMQDMGYPRVTLEQASHWIGNGADVLVSRALSQNYIVKDDLDAELIKQARA
RLDQHYHDGGHQLSHLYPDVKDTLERLHQQGYTLALVTNKPSQFVPELLEQHQLTHLFSEVIGGDTFAEKKPNPFALNWL
LDKHGLTAPQMLMVGDSKNDIQAAQAAGCHSFALTYGYNHGEPISDSQPDVVSDEFKYLLAVLSMAR
>Mature_227_residues
MFEDIKLIAFDLDGTLLDSVPDLARAVDLAMQDMGYPRVTLEQASHWIGNGADVLVSRALSQNYIVKDDLDAELIKQARA
RLDQHYHDGGHQLSHLYPDVKDTLERLHQQGYTLALVTNKPSQFVPELLEQHQLTHLFSEVIGGDTFAEKKPNPFALNWL
LDKHGLTAPQMLMVGDSKNDIQAAQAAGCHSFALTYGYNHGEPISDSQPDVVSDEFKYLLAVLSMAR

Specific function: Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stres

COG id: COG0546

COG function: function code R; Predicted phosphatases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family

Homologues:

Organism=Escherichia coli, GI1789787, Length=238, Percent_Identity=46.6386554621849, Blast_Score=197, Evalue=7e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): GPH_VIBF1 (Q5E2G4)

Other databases:

- EMBL:   CP000020
- RefSeq:   YP_205670.1
- ProteinModelPortal:   Q5E2G4
- SMR:   Q5E2G4
- STRING:   Q5E2G4
- GeneID:   3279479
- GenomeReviews:   CP000020_GR
- KEGG:   vfi:VF_2287
- NMPDR:   fig|312309.3.peg.2287
- eggNOG:   COG0546
- HOGENOM:   HBG742904
- OMA:   DSSNDAQ
- PhylomeDB:   Q5E2G4
- ProtClustDB:   PRK13222
- BioCyc:   VFIS312309:VF2287-MONOMER
- HAMAP:   MF_00495
- InterPro:   IPR005834
- InterPro:   IPR023214
- InterPro:   IPR006439
- InterPro:   IPR006402
- InterPro:   IPR005833
- InterPro:   IPR006346
- InterPro:   IPR023198
- Gene3D:   G3DSA:3.40.50.1000
- Gene3D:   G3DSA:1.10.150.240
- PRINTS:   PR00413
- TIGRFAMs:   TIGR01549
- TIGRFAMs:   TIGR01509
- TIGRFAMs:   TIGR01449

Pfam domain/function: PF00702 Hydrolase; SSF56784 SSF56784

EC number: =3.1.3.18

Molecular weight: Translated: 25297; Mature: 25297

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: NA

Important sites: ACT_SITE 11-11

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFEDIKLIAFDLDGTLLDSVPDLARAVDLAMQDMGYPRVTLEQASHWIGNGADVLVSRAL
CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHCCCCHHHHHHHHH
SQNYIVKDDLDAELIKQARARLDQHYHDGGHQLSHLYPDVKDTLERLHQQGYTLALVTNK
HCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHCCCEEEEEECC
PSQFVPELLEQHQLTHLFSEVIGGDTFAEKKPNPFALNWLLDKHGLTAPQMLMVGDSKND
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEECCCCCH
IQAAQAAGCHSFALTYGYNHGEPISDSQPDVVSDEFKYLLAVLSMAR
HHHHHHCCCHHHHEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFEDIKLIAFDLDGTLLDSVPDLARAVDLAMQDMGYPRVTLEQASHWIGNGADVLVSRAL
CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHCCCCHHHHHHHHH
SQNYIVKDDLDAELIKQARARLDQHYHDGGHQLSHLYPDVKDTLERLHQQGYTLALVTNK
HCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHCCCEEEEEECC
PSQFVPELLEQHQLTHLFSEVIGGDTFAEKKPNPFALNWLLDKHGLTAPQMLMVGDSKND
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEECCCCCH
IQAAQAAGCHSFALTYGYNHGEPISDSQPDVVSDEFKYLLAVLSMAR
HHHHHHCCCHHHHEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA