Click here to switch to the map view.

The map label for this gene is yacF [C]

Identifier: 59712797

GI number: 59712797

Start: 2461490

End: 2462236

Strand: Direct

Name: yacF [C]

Synonym: VF_2190

Alternate gene names: 59712797

Gene position: 2461490-2462236 (Clockwise)

Preceding gene: 59712796

Following gene: 59712798

Centisome position: 84.95

GC content: 38.02

Gene sequence:

>747_bases
ATGAATGGATTGGGTATGCAAAAATTTGAACACCCTTTAAATGAAAGGACTCGAATTTATTTACGAATAGAATCTCTATT
TCGTAAATTAGGGCATTCCGCTGATTTAACACAACCATTTGAATACCAAGTTTTTTTCAGTTCTTTATTTAATATGCTTG
ATATCTTAGAACAGGTACAAGTAAAAGCAGAGCTAGGTAAAGATCTAGAAAAGCTTCGCTTACAATATCGAGCTTGGATG
GACATTGAAGGCGTTGATCAATCAGCACTACTTTCTGTACTTGAACAGATCAGTCAGGTACATCAAAACTTAATGCAAAC
CACTCGCCCAGGTCACTCTTTAAAAGAGGATCGCTTCCTTTCTGCATTAAAACAACGCTTCTTTATTCCTGGTGGAGATT
GCTGTTTTGACTTACCAGCTCTACATCATTGGCTACATTTACCATTAGAAGTGCGCTGCCGTAATACGCATAATTGGATG
GCACAGCTCCTTTCTCTTTCTGATGCATTATCTTTATGGTTAAGACTAACTAGAGAAACAGCACGCTTTGAGCCTCAAAT
CGCTCGTAATGGATTCATGCAGAGTGAAATGGAAAATGCCAACTTACTTCGTCTGGAAATACCAATTGATCAAGGTGTTT
ATCCAATGATCTCTGGGCATAAAAGTCGTTTTGCGTTACGCTTTATGTCTTTTGAAACAAATAAGAATTGCGAAAAAGAT
ATCGAGTTCACGCTTGCTGTCTGCTGA

Upstream 100 bases:

>100_bases
GATCACAAAATAATGACTTAGATATGAAAATATCTCTGCTACATGAGAAATATCTGCTATTGTCTCTGGCATCTATAAAT
AAAGAGAATGAATAACGACT

Downstream 100 bases:

>100_bases
GGAAACTATGACAAAACCAACGACAGAGCAACCAACTACAGTTAAATGTCCAACATGTCAGTCTGCTGTTATTTGGAATG
CTGAAAGCCCATTTCGTCCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MNGLGMQKFEHPLNERTRIYLRIESLFRKLGHSADLTQPFEYQVFFSSLFNMLDILEQVQVKAELGKDLEKLRLQYRAWM
DIEGVDQSALLSVLEQISQVHQNLMQTTRPGHSLKEDRFLSALKQRFFIPGGDCCFDLPALHHWLHLPLEVRCRNTHNWM
AQLLSLSDALSLWLRLTRETARFEPQIARNGFMQSEMENANLLRLEIPIDQGVYPMISGHKSRFALRFMSFETNKNCEKD
IEFTLAVC

Sequences:

>Translated_248_residues
MNGLGMQKFEHPLNERTRIYLRIESLFRKLGHSADLTQPFEYQVFFSSLFNMLDILEQVQVKAELGKDLEKLRLQYRAWM
DIEGVDQSALLSVLEQISQVHQNLMQTTRPGHSLKEDRFLSALKQRFFIPGGDCCFDLPALHHWLHLPLEVRCRNTHNWM
AQLLSLSDALSLWLRLTRETARFEPQIARNGFMQSEMENANLLRLEIPIDQGVYPMISGHKSRFALRFMSFETNKNCEKD
IEFTLAVC
>Mature_248_residues
MNGLGMQKFEHPLNERTRIYLRIESLFRKLGHSADLTQPFEYQVFFSSLFNMLDILEQVQVKAELGKDLEKLRLQYRAWM
DIEGVDQSALLSVLEQISQVHQNLMQTTRPGHSLKEDRFLSALKQRFFIPGGDCCFDLPALHHWLHLPLEVRCRNTHNWM
AQLLSLSDALSLWLRLTRETARFEPQIARNGFMQSEMENANLLRLEIPIDQGVYPMISGHKSRFALRFMSFETNKNCEKD
IEFTLAVC

Specific function: Unknown

COG id: COG4582

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0289 family

Homologues:

Organism=Escherichia coli, GI1786291, Length=241, Percent_Identity=41.0788381742739, Blast_Score=194, Evalue=4e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2190_VIBF1 (Q5E2R1)

Other databases:

- EMBL:   CP000020
- RefSeq:   YP_205573.1
- ProteinModelPortal:   Q5E2R1
- SMR:   Q5E2R1
- STRING:   Q5E2R1
- GeneID:   3278388
- GenomeReviews:   CP000020_GR
- KEGG:   vfi:VF_2190
- NMPDR:   fig|312309.3.peg.2190
- eggNOG:   COG4582
- HOGENOM:   HBG432810
- OMA:   CYPTISG
- PhylomeDB:   Q5E2R1
- ProtClustDB:   PRK05287
- BioCyc:   VFIS312309:VF2190-MONOMER
- HAMAP:   MF_01092
- InterPro:   IPR009777

Pfam domain/function: PF07072 DUF1342

EC number: NA

Molecular weight: Translated: 29003; Mature: 29003

Theoretical pI: Translated: 7.00; Mature: 7.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGLGMQKFEHPLNERTRIYLRIESLFRKLGHSADLTQPFEYQVFFSSLFNMLDILEQVQ
CCCCCCHHHHCCCCCHHEEEEEHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
VKAELGKDLEKLRLQYRAWMDIEGVDQSALLSVLEQISQVHQNLMQTTRPGHSLKEDRFL
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
SALKQRFFIPGGDCCFDLPALHHWLHLPLEVRCRNTHNWMAQLLSLSDALSLWLRLTRET
HHHHHHHCCCCCCHHCCCHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
ARFEPQIARNGFMQSEMENANLLRLEIPIDQGVYPMISGHKSRFALRFMSFETNKNCEKD
HHCCHHHHHCCCHHHHCCCCCEEEEEECCCCCCCHHHCCCCHHHEEHEEECCCCCCCCCC
IEFTLAVC
CCEEEEEC
>Mature Secondary Structure
MNGLGMQKFEHPLNERTRIYLRIESLFRKLGHSADLTQPFEYQVFFSSLFNMLDILEQVQ
CCCCCCHHHHCCCCCHHEEEEEHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
VKAELGKDLEKLRLQYRAWMDIEGVDQSALLSVLEQISQVHQNLMQTTRPGHSLKEDRFL
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
SALKQRFFIPGGDCCFDLPALHHWLHLPLEVRCRNTHNWMAQLLSLSDALSLWLRLTRET
HHHHHHHCCCCCCHHCCCHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
ARFEPQIARNGFMQSEMENANLLRLEIPIDQGVYPMISGHKSRFALRFMSFETNKNCEKD
HHCCHHHHHCCCHHHHCCCCCEEEEEECCCCCCCHHHCCCCHHHEEHEEECCCCCCCCCC
IEFTLAVC
CCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA