Click here to switch to the map view.

The map label for this gene is ndvB [H]

Identifier: 59712754

GI number: 59712754

Start: 2401637

End: 2404042

Strand: Direct

Name: ndvB [H]

Synonym: VF_2147

Alternate gene names: 59712754

Gene position: 2401637-2404042 (Clockwise)

Preceding gene: 59712753

Following gene: 59712755

Centisome position: 82.89

GC content: 41.85

Gene sequence:

>2406_bases
ATGAAATACGGTTTTTTCGATAACGACAATCGTGAATATGTCATCACACGCCCTGACGTACCAGCACCATGGACTAACTA
CTTAGGTACAGAAAAGTTCTGTACGGTTATTTCTCACAATGCTGGCGGTTACTCTTTCTATAACTCTCCAGAGTACAACC
GTGTTACTAAGTTCCGCCCAAATGGCACATTTGATCGCCCAGGACATTATGTTTATTTACGTGATGATGAAACTGGTGAT
TACTGGTCAATCTCATGGCAACCAGTAGCAAAAAGCTTAGACGAAGCAAACTATGAAGTTCGCCACGGTCTTTCTTACTC
AAAATTCAAATGTGAGTACAACGGTATTGAAGCAACAAAAACGTTATTCGTACCAAAAGGTGAAGATGCTGAAGTATGGG
ATGTCGTGATTAAAAACACGAGCGATAAACCACGCACTATTTCAACGTTCTCATTTGTTGAGTTTTCATTTAGCCATATT
CAATCTGATAATCAAAACCACCAGATGTCTCTTTACTCTGCGGGTACAGAATACAAAAATGGCGTACTTGAATACGATCT
TTACTACAACACCAATGACTTTGAAGGCTTCTACTACCTAGCTTCAACGTTTGATCCTGATTCATATGATGGCCAACGCG
ATACCTTCTTAGGTCTATACCGTGATGAAGCAAATCCGATTGCCGTTGAAAAAGGACGTTGTTCAAACTCAGCGCAAACT
TGTTATAACCACTGTGGTTCTCTGCATAAACAATTCACAATTCAACCAGGTGAAGAAGTCCGTTTTGCTTACGTACTAGG
TATTGGTAAAGGTAATGGCGAACGTCTACGTGAAAAATATCAAGACGTAGCAAATGTGGATGCGGCATTCCAAGAAATTA
AAAATCACTGGAATGAGCGCTGCGAAAAATTCCAAGTATCATCACCAAACGAAGGCCTAGATACGATGATCAACACATGG
ACGCTATACCAAGCTGAAACGTGTGTTGTATGGTCTCGCTTTGCTTCTTTCATTGAAGTTGGTGGTCGTACTGGTCTTGG
TTATCGTGATACTGCTCAAGATGCGATTTCTGTGCCTCACGCTAACCCAGCAATGACTCGCAAACGTATTGTGGATTTAC
TACGTGGACAAGTAAAAGCAGGTTACGGTCTACACCTATTCGATCCAGATTGGTTTGATCCAGAAAAAGCAGATGTTAAA
CCATCTAAATCACCGACAGTGGTTCCAACACCATCAGACGACGACAAGATCCACGGTATTGAAGATACGTGTTCTGATGA
CCACTTATGGATCGTTCCTACTATTATCAAATACGTAATGGAAACTGGTGAGCATTCTTTCTTTGATGAAGTGATCCCAT
ATGCTGATGGTGGCGATGCAACAGTCTACGAACACATGAAAGCAGCACTAGATTTTTCTGCTGAATATGTTGGTCAAACA
GGTATCTGTAAAGGGTTACGAGCTGACTGGAATGACTGTCTAAACTTAGGTGGTGGTGAATCATCAATGGTTTCATTCCT
ACATTTCTGGGCACTTCAAGAGTTCCTAGATTTAGCTAAATTCCGTAATAACGATGCTGACGTAACGAAATATACAGAAA
TGGCAGCAAATGTTCGTGAAGCGTGTGAAACACACCTTTGGGATGACGAAGGTGGTTGGTACATTCGTGGCCTAACAAAA
GATGGCGACAAAATTGGTACAGCGCAACAAACCGAAGGTCGAGTGCATCTTGAGTCAAATACATTAGCGGTACTTTCTGG
TGCGGTATCTCAAGAACGCGGTGAGAAAGCGATGGATGCAGTTGATGAAAACCTATTCTCTGAATACGGTCTTCACCTAA
ATTCACCATCATTTGCAACACCAAATGATGATATCGGTTTTGTTACTCGTGTTTATCAAGGCGTAAAAGAAAATGGCGCA
ATCTTCTCTCATCCAAACCCATGGGCTTGGGTAGCAGAAGCGAAACTTGGTCGTGGTGACCGTGCGATGAAGTTCTATGA
TGCACTTAACCCATATAACCAAAATGACATCATTGAAAAACGTATTGCTGAACCATACTCATACGTTCAATTCATTATGG
GTAAAGATCACCAAGATCATGGTCGTGCAAACCACCCTTGGTTAACTGGAACATCGGGTTGGGCTTACTTTGCAGTAACT
AACTTTATCTTGGGTGTTCGTACTGGTTTTGATGGATTAACAATTGATCCATGTATTCCAACAAACTGGCCTGAATTTAC
CGTTACTCGCCAATGGCGTGGCGCCACTTACCACATTCAGGTGAAAAACCCGAATTCTGTAAGTAAAGGGGTTCAAAGCA
TTACGCTTAATGGTGCAGACGTTGTGGGTTCAGTACCGGTTCAAGCTGAAGGTTCTATTAACGAAGTTGTCGTAATTATG
GGCTAA

Upstream 100 bases:

>100_bases
CAAGGTTAAATGGACGATTACCAACCCTAACACGTCAGGGTATTAATTTCCGTCAACCATAAGTCACCCATTTATTAGTA
TTTTAGTTAAGGATAAAAAA

Downstream 100 bases:

>100_bases
GCTCGTTTAATGATGAGCTAAGTGTTATAGACAAAAGTAAGGCACCTTATTCTGGTGCCTTACTATAAAAGGAATTTACT
ATGATTCAATTTGGTACAGG

Product: N,N'-diacetylchitobiose phosphorylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 801; Mature: 801

Protein sequence:

>801_residues
MKYGFFDNDNREYVITRPDVPAPWTNYLGTEKFCTVISHNAGGYSFYNSPEYNRVTKFRPNGTFDRPGHYVYLRDDETGD
YWSISWQPVAKSLDEANYEVRHGLSYSKFKCEYNGIEATKTLFVPKGEDAEVWDVVIKNTSDKPRTISTFSFVEFSFSHI
QSDNQNHQMSLYSAGTEYKNGVLEYDLYYNTNDFEGFYYLASTFDPDSYDGQRDTFLGLYRDEANPIAVEKGRCSNSAQT
CYNHCGSLHKQFTIQPGEEVRFAYVLGIGKGNGERLREKYQDVANVDAAFQEIKNHWNERCEKFQVSSPNEGLDTMINTW
TLYQAETCVVWSRFASFIEVGGRTGLGYRDTAQDAISVPHANPAMTRKRIVDLLRGQVKAGYGLHLFDPDWFDPEKADVK
PSKSPTVVPTPSDDDKIHGIEDTCSDDHLWIVPTIIKYVMETGEHSFFDEVIPYADGGDATVYEHMKAALDFSAEYVGQT
GICKGLRADWNDCLNLGGGESSMVSFLHFWALQEFLDLAKFRNNDADVTKYTEMAANVREACETHLWDDEGGWYIRGLTK
DGDKIGTAQQTEGRVHLESNTLAVLSGAVSQERGEKAMDAVDENLFSEYGLHLNSPSFATPNDDIGFVTRVYQGVKENGA
IFSHPNPWAWVAEAKLGRGDRAMKFYDALNPYNQNDIIEKRIAEPYSYVQFIMGKDHQDHGRANHPWLTGTSGWAYFAVT
NFILGVRTGFDGLTIDPCIPTNWPEFTVTRQWRGATYHIQVKNPNSVSKGVQSITLNGADVVGSVPVQAEGSINEVVVIM
G

Sequences:

>Translated_801_residues
MKYGFFDNDNREYVITRPDVPAPWTNYLGTEKFCTVISHNAGGYSFYNSPEYNRVTKFRPNGTFDRPGHYVYLRDDETGD
YWSISWQPVAKSLDEANYEVRHGLSYSKFKCEYNGIEATKTLFVPKGEDAEVWDVVIKNTSDKPRTISTFSFVEFSFSHI
QSDNQNHQMSLYSAGTEYKNGVLEYDLYYNTNDFEGFYYLASTFDPDSYDGQRDTFLGLYRDEANPIAVEKGRCSNSAQT
CYNHCGSLHKQFTIQPGEEVRFAYVLGIGKGNGERLREKYQDVANVDAAFQEIKNHWNERCEKFQVSSPNEGLDTMINTW
TLYQAETCVVWSRFASFIEVGGRTGLGYRDTAQDAISVPHANPAMTRKRIVDLLRGQVKAGYGLHLFDPDWFDPEKADVK
PSKSPTVVPTPSDDDKIHGIEDTCSDDHLWIVPTIIKYVMETGEHSFFDEVIPYADGGDATVYEHMKAALDFSAEYVGQT
GICKGLRADWNDCLNLGGGESSMVSFLHFWALQEFLDLAKFRNNDADVTKYTEMAANVREACETHLWDDEGGWYIRGLTK
DGDKIGTAQQTEGRVHLESNTLAVLSGAVSQERGEKAMDAVDENLFSEYGLHLNSPSFATPNDDIGFVTRVYQGVKENGA
IFSHPNPWAWVAEAKLGRGDRAMKFYDALNPYNQNDIIEKRIAEPYSYVQFIMGKDHQDHGRANHPWLTGTSGWAYFAVT
NFILGVRTGFDGLTIDPCIPTNWPEFTVTRQWRGATYHIQVKNPNSVSKGVQSITLNGADVVGSVPVQAEGSINEVVVIM
G
>Mature_801_residues
MKYGFFDNDNREYVITRPDVPAPWTNYLGTEKFCTVISHNAGGYSFYNSPEYNRVTKFRPNGTFDRPGHYVYLRDDETGD
YWSISWQPVAKSLDEANYEVRHGLSYSKFKCEYNGIEATKTLFVPKGEDAEVWDVVIKNTSDKPRTISTFSFVEFSFSHI
QSDNQNHQMSLYSAGTEYKNGVLEYDLYYNTNDFEGFYYLASTFDPDSYDGQRDTFLGLYRDEANPIAVEKGRCSNSAQT
CYNHCGSLHKQFTIQPGEEVRFAYVLGIGKGNGERLREKYQDVANVDAAFQEIKNHWNERCEKFQVSSPNEGLDTMINTW
TLYQAETCVVWSRFASFIEVGGRTGLGYRDTAQDAISVPHANPAMTRKRIVDLLRGQVKAGYGLHLFDPDWFDPEKADVK
PSKSPTVVPTPSDDDKIHGIEDTCSDDHLWIVPTIIKYVMETGEHSFFDEVIPYADGGDATVYEHMKAALDFSAEYVGQT
GICKGLRADWNDCLNLGGGESSMVSFLHFWALQEFLDLAKFRNNDADVTKYTEMAANVREACETHLWDDEGGWYIRGLTK
DGDKIGTAQQTEGRVHLESNTLAVLSGAVSQERGEKAMDAVDENLFSEYGLHLNSPSFATPNDDIGFVTRVYQGVKENGA
IFSHPNPWAWVAEAKLGRGDRAMKFYDALNPYNQNDIIEKRIAEPYSYVQFIMGKDHQDHGRANHPWLTGTSGWAYFAVT
NFILGVRTGFDGLTIDPCIPTNWPEFTVTRQWRGATYHIQVKNPNSVSKGVQSITLNGADVVGSVPVQAEGSINEVVVIM
G

Specific function: Involved in the production of beta-(1,2)-glucan. It is involved not only in invasion but also in bacteroid development [H]

COG id: COG3459

COG function: function code G; Cellobiose phosphorylase

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To A.tumefaciens ChvB [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008928
- InterPro:   IPR009342
- InterPro:   IPR019282
- InterPro:   IPR021478
- InterPro:   IPR011013
- InterPro:   IPR010383
- InterPro:   IPR010403 [H]

Pfam domain/function: PF06204 CBM_X; PF10091 DUF2329; PF11329 DUF3131; PF06165 Glyco_transf_36; PF06205 GT36_AF [H]

EC number: NA

Molecular weight: Translated: 90311; Mature: 90311

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYGFFDNDNREYVITRPDVPAPWTNYLGTEKFCTVISHNAGGYSFYNSPEYNRVTKFRP
CCCCCCCCCCCEEEEECCCCCCCHHHHCCCHHHHHHEECCCCCCCCCCCCCCCCEEEECC
NGTFDRPGHYVYLRDDETGDYWSISWQPVAKSLDEANYEVRHGLSYSKFKCEYNGIEATK
CCCCCCCCCEEEEEECCCCCEEEEEHHHHHHHHHHCCCHHHCCCCCCEEEEEECCCCEEE
TLFVPKGEDAEVWDVVIKNTSDKPRTISTFSFVEFSFSHIQSDNQNHQMSLYSAGTEYKN
EEEECCCCCCCEEEEEEECCCCCCCEEEEEHHHHHHHHHHCCCCCCCEEEEEECCCHHCC
GVLEYDLYYNTNDFEGFYYLASTFDPDSYDGQRDTFLGLYRDEANPIAVEKGRCSNSAQT
CEEEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCHHHH
CYNHCGSLHKQFTIQPGEEVRFAYVLGIGKGNGERLREKYQDVANVDAAFQEIKNHWNER
HHHHHHHHHHEEECCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CEKFQVSSPNEGLDTMINTWTLYQAETCVVWSRFASFIEVGGRTGLGYRDTAQDAISVPH
HHEEECCCCCCCHHHHHHEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCC
ANPAMTRKRIVDLLRGQVKAGYGLHLFDPDWFDPEKADVKPSKSPTVVPTPSDDDKIHGI
CCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
EDTCSDDHLWIVPTIIKYVMETGEHSFFDEVIPYADGGDATVYEHMKAALDFSAEYVGQT
CCCCCCCCEEEHHHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHCCCC
GICKGLRADWNDCLNLGGGESSMVSFLHFWALQEFLDLAKFRNNDADVTKYTEMAANVRE
HHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
ACETHLWDDEGGWYIRGLTKDGDKIGTAQQTEGRVHLESNTLAVLSGAVSQERGEKAMDA
HHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCEEEEECHHHHHHHHHHHHH
VDENLFSEYGLHLNSPSFATPNDDIGFVTRVYQGVKENGAIFSHPNPWAWVAEAKLGRGD
HHHHHHHHHCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCCEEEEECCCCCCC
RAMKFYDALNPYNQNDIIEKRIAEPYSYVQFIMGKDHQDHGRANHPWLTGTSGWAYFAVT
HHHHHHHHCCCCCCCHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCEEECCCCCHHHHHH
NFILGVRTGFDGLTIDPCIPTNWPEFTVTRQWRGATYHIQVKNPNSVSKGVQSITLNGAD
HHHHHHCCCCCCCEECCCCCCCCCCEEEEEECCCEEEEEEECCCCHHHHCCCEEEECCCH
VVGSVPVQAEGSINEVVVIMG
HEECCCCCCCCCCCEEEEEEC
>Mature Secondary Structure
MKYGFFDNDNREYVITRPDVPAPWTNYLGTEKFCTVISHNAGGYSFYNSPEYNRVTKFRP
CCCCCCCCCCCEEEEECCCCCCCHHHHCCCHHHHHHEECCCCCCCCCCCCCCCCEEEECC
NGTFDRPGHYVYLRDDETGDYWSISWQPVAKSLDEANYEVRHGLSYSKFKCEYNGIEATK
CCCCCCCCCEEEEEECCCCCEEEEEHHHHHHHHHHCCCHHHCCCCCCEEEEEECCCCEEE
TLFVPKGEDAEVWDVVIKNTSDKPRTISTFSFVEFSFSHIQSDNQNHQMSLYSAGTEYKN
EEEECCCCCCCEEEEEEECCCCCCCEEEEEHHHHHHHHHHCCCCCCCEEEEEECCCHHCC
GVLEYDLYYNTNDFEGFYYLASTFDPDSYDGQRDTFLGLYRDEANPIAVEKGRCSNSAQT
CEEEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCHHHH
CYNHCGSLHKQFTIQPGEEVRFAYVLGIGKGNGERLREKYQDVANVDAAFQEIKNHWNER
HHHHHHHHHHEEECCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CEKFQVSSPNEGLDTMINTWTLYQAETCVVWSRFASFIEVGGRTGLGYRDTAQDAISVPH
HHEEECCCCCCCHHHHHHEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCC
ANPAMTRKRIVDLLRGQVKAGYGLHLFDPDWFDPEKADVKPSKSPTVVPTPSDDDKIHGI
CCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
EDTCSDDHLWIVPTIIKYVMETGEHSFFDEVIPYADGGDATVYEHMKAALDFSAEYVGQT
CCCCCCCCEEEHHHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHCCCC
GICKGLRADWNDCLNLGGGESSMVSFLHFWALQEFLDLAKFRNNDADVTKYTEMAANVRE
HHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
ACETHLWDDEGGWYIRGLTKDGDKIGTAQQTEGRVHLESNTLAVLSGAVSQERGEKAMDA
HHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCEEEEECHHHHHHHHHHHHH
VDENLFSEYGLHLNSPSFATPNDDIGFVTRVYQGVKENGAIFSHPNPWAWVAEAKLGRGD
HHHHHHHHHCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCCEEEEECCCCCCC
RAMKFYDALNPYNQNDIIEKRIAEPYSYVQFIMGKDHQDHGRANHPWLTGTSGWAYFAVT
HHHHHHHHCCCCCCCHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCEEECCCCCHHHHHH
NFILGVRTGFDGLTIDPCIPTNWPEFTVTRQWRGATYHIQVKNPNSVSKGVQSITLNGAD
HHHHHHCCCCCCCEECCCCCCCCCCEEEEEECCCEEEEEEECCCCHHHHCCCEEEECCCH
VVGSVPVQAEGSINEVVVIMG
HEECCCCCCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2154461; 11481430 [H]