| Definition | Vibrio fischeri ES114 chromosome I, complete genome. |
|---|---|
| Accession | NC_006840 |
| Length | 2,897,536 |
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The map label for this gene is appF [H]
Identifier: 59712750
GI number: 59712750
Start: 2396033
End: 2397028
Strand: Direct
Name: appF [H]
Synonym: VF_2143
Alternate gene names: 59712750
Gene position: 2396033-2397028 (Clockwise)
Preceding gene: 59712749
Following gene: 59712751
Centisome position: 82.69
GC content: 40.46
Gene sequence:
>996_bases ATGAGCAAAGAATTTGGCGAATTACTGATTGAAGGTAAGAATCTGGTTAAAGATTTCCCTGTAAGCAGTAACGCACTTAA AAACCCAATGATGCGTGCGATTAATGACGTATCTTTCAAAATGTACAAAAGCCGTGGTCTTTCTGTTGTAGGTGAATCTG GTTCAGGTAAATCCACCACAGCAAAAATGATAGCAAAAATGTATGCACCAACAGATGGTGTAATCGAATATAAAGGTCGT GATATTCAAACTATCGTTAAGAAAAACGATTTAATGACTTATCGCGAAGGTGTTCAAATGGTATGGCAAGATCCGTTTGG TTCTTTAAACCCTACTCACAACATCTTCCACCATATTGCTCGTCCTCTTCTTATCCATAAGAAAGTGACTCCAGGCAATA AAAAGGAATTAGAAGAGCGCGTTTACGATCTTCTAGAACAAGTTGGCTTGATCCCACCTAAAGAAACTGCGGCAAAGTTC CCGCACCAACTTTCAGGTGGCCAACGTCAACGTGTAAACCTTGCAAGAAACATTGCTGTTGGTGCTGAAGTGGTATTAGC TGACGAACCAACCTCAATGCTTGATGTGTCGATTCGTGCTGGTGTTCTAAACCTAATGGAAGAGATGAAGTTCGAGAAAA AAATGTCTCTTCTTTATATCACTCACGATATCGCAACTGCACGTTACATTGCAGAAGATCTTGCAGTTATGTATGTCGGT CATATGGTTGAATGGGGTGATACGGATGAGATCATCCACGATCCACAACACCCATATACTCAACTACTTGTATCAGCAGT TCCAGATCCAAGTAAGTCGATTCATACAGAACTAAAAGGCAACAAAGGTGAAATTCCATTATGGACACCTGAATCAGTAG GCTGTCCTTTTGCTGGCCGCTGTCTTCACGCAAGTGCTAAATGTAAAGAACAAATGCCTGGCGTAACAAAACTGTCAGAC AACCATTTTGTTCGTTGTTACTTATACGAAAATTAA
Upstream 100 bases:
>100_bases CAGCTTCGTCAGATCGAGCCTGGACACTTGTCAAACTGTCACCTTTACGGTGAAACCATTGCACAAGTAAAAGCATAAAA CGGATTTTCTGGAGTAAATT
Downstream 100 bases:
>100_bases TTTCATTTGTAATTCTGAACAGCAGTAATTGGTATTTTGGAGAAATAGATGCAACTGTTAACTAACCATATTGGATATGA AACAAACGGACCGAAATCAG
Product: chitooligosaccharide transport ATP-binding protein
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 331; Mature: 330
Protein sequence:
>331_residues MSKEFGELLIEGKNLVKDFPVSSNALKNPMMRAINDVSFKMYKSRGLSVVGESGSGKSTTAKMIAKMYAPTDGVIEYKGR DIQTIVKKNDLMTYREGVQMVWQDPFGSLNPTHNIFHHIARPLLIHKKVTPGNKKELEERVYDLLEQVGLIPPKETAAKF PHQLSGGQRQRVNLARNIAVGAEVVLADEPTSMLDVSIRAGVLNLMEEMKFEKKMSLLYITHDIATARYIAEDLAVMYVG HMVEWGDTDEIIHDPQHPYTQLLVSAVPDPSKSIHTELKGNKGEIPLWTPESVGCPFAGRCLHASAKCKEQMPGVTKLSD NHFVRCYLYEN
Sequences:
>Translated_331_residues MSKEFGELLIEGKNLVKDFPVSSNALKNPMMRAINDVSFKMYKSRGLSVVGESGSGKSTTAKMIAKMYAPTDGVIEYKGR DIQTIVKKNDLMTYREGVQMVWQDPFGSLNPTHNIFHHIARPLLIHKKVTPGNKKELEERVYDLLEQVGLIPPKETAAKF PHQLSGGQRQRVNLARNIAVGAEVVLADEPTSMLDVSIRAGVLNLMEEMKFEKKMSLLYITHDIATARYIAEDLAVMYVG HMVEWGDTDEIIHDPQHPYTQLLVSAVPDPSKSIHTELKGNKGEIPLWTPESVGCPFAGRCLHASAKCKEQMPGVTKLSD NHFVRCYLYEN >Mature_330_residues SKEFGELLIEGKNLVKDFPVSSNALKNPMMRAINDVSFKMYKSRGLSVVGESGSGKSTTAKMIAKMYAPTDGVIEYKGRD IQTIVKKNDLMTYREGVQMVWQDPFGSLNPTHNIFHHIARPLLIHKKVTPGNKKELEERVYDLLEQVGLIPPKETAAKFP HQLSGGQRQRVNLARNIAVGAEVVLADEPTSMLDVSIRAGVLNLMEEMKFEKKMSLLYITHDIATARYIAEDLAVMYVGH MVEWGDTDEIIHDPQHPYTQLLVSAVPDPSKSIHTELKGNKGEIPLWTPESVGCPFAGRCLHASAKCKEQMPGVTKLSDN HFVRCYLYEN
Specific function: This protein is a component of an oligopeptide permease, a binding protein-dependent transport system. This APP system can completely substitute for the OPP system in both sporulation and genetic competence, though, unlike OPP, is incapable of transportin
COG id: COG4608
COG function: function code E; ABC-type oligopeptide transport system, ATPase component
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI42490749, Length=242, Percent_Identity=27.6859504132231, Blast_Score=86, Evalue=7e-17, Organism=Homo sapiens, GI105990541, Length=234, Percent_Identity=27.3504273504274, Blast_Score=85, Evalue=1e-16, Organism=Homo sapiens, GI42741659, Length=227, Percent_Identity=28.6343612334802, Blast_Score=82, Evalue=5e-16, Organism=Homo sapiens, GI116734710, Length=236, Percent_Identity=25, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI255708477, Length=318, Percent_Identity=23.5849056603774, Blast_Score=79, Evalue=8e-15, Organism=Homo sapiens, GI9961252, Length=225, Percent_Identity=28.4444444444444, Blast_Score=77, Evalue=3e-14, Organism=Homo sapiens, GI9961250, Length=225, Percent_Identity=28.4444444444444, Blast_Score=76, Evalue=4e-14, Organism=Homo sapiens, GI4505771, Length=225, Percent_Identity=28.4444444444444, Blast_Score=76, Evalue=4e-14, Organism=Homo sapiens, GI21536376, Length=239, Percent_Identity=23.0125523012552, Blast_Score=76, Evalue=5e-14, Organism=Homo sapiens, GI171184400, Length=266, Percent_Identity=26.6917293233083, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI47078218, Length=213, Percent_Identity=22.0657276995305, Blast_Score=72, Evalue=8e-13, Organism=Homo sapiens, GI45446740, Length=213, Percent_Identity=22.0657276995305, Blast_Score=72, Evalue=8e-13, Organism=Homo sapiens, GI156105685, Length=253, Percent_Identity=24.901185770751, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI21536378, Length=242, Percent_Identity=24.7933884297521, Blast_Score=70, Evalue=4e-12, Organism=Homo sapiens, GI27881501, Length=212, Percent_Identity=25.9433962264151, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI30795238, Length=212, Percent_Identity=25.9433962264151, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI150417984, Length=236, Percent_Identity=24.5762711864407, Blast_Score=67, Evalue=2e-11, Organism=Escherichia coli, GI1787500, Length=299, Percent_Identity=38.7959866220736, Blast_Score=216, Evalue=2e-57, Organism=Escherichia coli, GI1789962, Length=323, Percent_Identity=36.2229102167183, Blast_Score=214, Evalue=7e-57, Organism=Escherichia coli, GI145693107, Length=272, Percent_Identity=41.1764705882353, Blast_Score=202, Evalue=3e-53, Organism=Escherichia coli, GI1789963, Length=301, Percent_Identity=35.5481727574751, Blast_Score=197, Evalue=1e-51, Organism=Escherichia coli, GI1787758, Length=325, Percent_Identity=32.6153846153846, Blast_Score=184, Evalue=1e-47, Organism=Escherichia coli, GI1787759, Length=303, Percent_Identity=33.3333333333333, Blast_Score=170, Evalue=1e-43, Organism=Escherichia coli, GI48994883, Length=301, Percent_Identity=32.5581395348837, Blast_Score=169, Evalue=2e-43, Organism=Escherichia coli, GI1787547, Length=260, Percent_Identity=31.5384615384615, Blast_Score=152, Evalue=2e-38, Organism=Escherichia coli, GI1788506, Length=248, Percent_Identity=36.6935483870968, Blast_Score=150, Evalue=1e-37, Organism=Escherichia coli, GI48994997, Length=236, Percent_Identity=34.7457627118644, Blast_Score=140, Evalue=2e-34, Organism=Escherichia coli, GI1787548, Length=331, Percent_Identity=26.8882175226586, Blast_Score=132, Evalue=4e-32, Organism=Escherichia coli, GI1786398, Length=236, Percent_Identity=30.9322033898305, Blast_Score=118, Evalue=7e-28, Organism=Escherichia coli, GI1789032, Length=241, Percent_Identity=29.8755186721992, Blast_Score=115, Evalue=4e-27, Organism=Escherichia coli, GI1789891, Length=211, Percent_Identity=30.8056872037915, Blast_Score=113, Evalue=1e-26, Organism=Escherichia coli, GI1788225, Length=257, Percent_Identity=32.6848249027237, Blast_Score=110, Evalue=2e-25, Organism=Escherichia coli, GI1789890, Length=249, Percent_Identity=30.5220883534137, Blast_Score=108, Evalue=4e-25, Organism=Escherichia coli, GI87081791, Length=263, Percent_Identity=31.5589353612167, Blast_Score=107, Evalue=8e-25, Organism=Escherichia coli, GI1787029, Length=249, Percent_Identity=32.1285140562249, Blast_Score=105, Evalue=5e-24, Organism=Escherichia coli, GI1788761, Length=224, Percent_Identity=29.9107142857143, Blast_Score=103, Evalue=2e-23, Organism=Escherichia coli, GI1789873, Length=211, Percent_Identity=33.175355450237, Blast_Score=103, Evalue=2e-23, Organism=Escherichia coli, GI1786872, Length=226, Percent_Identity=35.8407079646018, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI87081834, Length=231, Percent_Identity=29.8701298701299, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1788450, Length=232, Percent_Identity=28.8793103448276, Blast_Score=98, Evalue=6e-22, Organism=Escherichia coli, GI1789672, Length=241, Percent_Identity=30.2904564315353, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1790162, Length=236, Percent_Identity=29.2372881355932, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1786253, Length=218, Percent_Identity=30.7339449541284, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI87081709, Length=248, Percent_Identity=27.4193548387097, Blast_Score=94, Evalue=2e-20, Organism=Escherichia coli, GI1787089, Length=230, Percent_Identity=29.1304347826087, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI1788644, Length=216, Percent_Identity=30.0925925925926, Blast_Score=92, Evalue=5e-20, Organism=Escherichia coli, GI1787712, Length=230, Percent_Identity=28.695652173913, Blast_Score=88, Evalue=6e-19, Organism=Escherichia coli, GI1787370, Length=214, Percent_Identity=29.9065420560748, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1786698, Length=194, Percent_Identity=29.3814432989691, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1790467, Length=279, Percent_Identity=26.8817204301075, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1787105, Length=217, Percent_Identity=27.1889400921659, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI87082267, Length=238, Percent_Identity=29.8319327731092, Blast_Score=84, Evalue=2e-17, Organism=Escherichia coli, GI1786563, Length=208, Percent_Identity=29.3269230769231, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1788210, Length=267, Percent_Identity=26.2172284644195, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1786703, Length=194, Percent_Identity=29.3814432989691, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1786803, Length=205, Percent_Identity=28.780487804878, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1790739, Length=231, Percent_Identity=25.974025974026, Blast_Score=76, Evalue=4e-15, Organism=Escherichia coli, GI1786345, Length=253, Percent_Identity=26.0869565217391, Blast_Score=74, Evalue=9e-15, Organism=Escherichia coli, GI1787164, Length=209, Percent_Identity=26.7942583732057, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1788165, Length=223, Percent_Identity=25.1121076233184, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1789586, Length=231, Percent_Identity=28.1385281385281, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1790534, Length=234, Percent_Identity=28.2051282051282, Blast_Score=69, Evalue=5e-13, Organism=Escherichia coli, GI1787792, Length=269, Percent_Identity=24.907063197026, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1787112, Length=228, Percent_Identity=26.3157894736842, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI48994943, Length=252, Percent_Identity=23.015873015873, Blast_Score=62, Evalue=5e-11, Organism=Caenorhabditis elegans, GI193208177, Length=248, Percent_Identity=26.6129032258064, Blast_Score=86, Evalue=3e-17, Organism=Caenorhabditis elegans, GI193209708, Length=233, Percent_Identity=29.6137339055794, Blast_Score=80, Evalue=2e-15, Organism=Caenorhabditis elegans, GI115533608, Length=209, Percent_Identity=26.3157894736842, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17565938, Length=264, Percent_Identity=27.2727272727273, Blast_Score=78, Evalue=6e-15, Organism=Caenorhabditis elegans, GI212646699, Length=255, Percent_Identity=25.0980392156863, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI71992285, Length=237, Percent_Identity=26.1603375527426, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI115534520, Length=231, Percent_Identity=27.2727272727273, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI193211015, Length=231, Percent_Identity=25.974025974026, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI71996809, Length=231, Percent_Identity=26.4069264069264, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17567265, Length=233, Percent_Identity=25.7510729613734, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI193211017, Length=230, Percent_Identity=26.0869565217391, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI25146777, Length=265, Percent_Identity=26.4150943396226, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17543740, Length=245, Percent_Identity=26.530612244898, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI115535101, Length=227, Percent_Identity=27.3127753303965, Blast_Score=71, Evalue=9e-13, Organism=Caenorhabditis elegans, GI193202349, Length=233, Percent_Identity=22.7467811158798, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17567269, Length=236, Percent_Identity=27.1186440677966, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17510237, Length=246, Percent_Identity=25.2032520325203, Blast_Score=67, Evalue=9e-12, Organism=Saccharomyces cerevisiae, GI6324985, Length=277, Percent_Identity=26.7148014440433, Blast_Score=90, Evalue=6e-19, Organism=Saccharomyces cerevisiae, GI6323217, Length=248, Percent_Identity=27.0161290322581, Blast_Score=74, Evalue=4e-14, Organism=Saccharomyces cerevisiae, GI6323959, Length=245, Percent_Identity=27.3469387755102, Blast_Score=73, Evalue=5e-14, Organism=Saccharomyces cerevisiae, GI6321752, Length=251, Percent_Identity=26.2948207171315, Blast_Score=67, Evalue=3e-12, Organism=Drosophila melanogaster, GI24643674, Length=213, Percent_Identity=24.8826291079812, Blast_Score=73, Evalue=3e-13, Organism=Drosophila melanogaster, GI28574533, Length=222, Percent_Identity=28.3783783783784, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI281363262, Length=227, Percent_Identity=26.8722466960352, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24653245, Length=229, Percent_Identity=27.0742358078603, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI221500365, Length=219, Percent_Identity=22.8310502283105, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI116007184, Length=219, Percent_Identity=22.8310502283105, Blast_Score=66, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 37051; Mature: 36920
Theoretical pI: Translated: 7.70; Mature: 7.70
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKEFGELLIEGKNLVKDFPVSSNALKNPMMRAINDVSFKMYKSRGLSVVGESGSGKSTT CCCHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHH AKMIAKMYAPTDGVIEYKGRDIQTIVKKNDLMTYREGVQMVWQDPFGSLNPTHNIFHHIA HHHHHHHHCCCCCEEEECCCCHHHHHHHCCHHHHHHHHHHEECCCCCCCCCHHHHHHHHH RPLLIHKKVTPGNKKELEERVYDLLEQVGLIPPKETAAKFPHQLSGGQRQRVNLARNIAV HHHHEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHCCCCHHHHHHHHHHCC GAEVVLADEPTSMLDVSIRAGVLNLMEEMKFEKKMSLLYITHDIATARYIAEDLAVMYVG CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEHHHHHHHHHHHHHHHHHHH HMVEWGDTDEIIHDPQHPYTQLLVSAVPDPSKSIHTELKGNKGEIPLWTPESVGCPFAGR HHHCCCCCHHHHCCCCCHHHHHHHHHCCCCCHHHHHHCCCCCCCCCEECCCCCCCCCCCH CLHASAKCKEQMPGVTKLSDNHFVRCYLYEN HHCCHHHHHHHCCCCEEECCCCEEEEEEECC >Mature Secondary Structure SKEFGELLIEGKNLVKDFPVSSNALKNPMMRAINDVSFKMYKSRGLSVVGESGSGKSTT CCHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHH AKMIAKMYAPTDGVIEYKGRDIQTIVKKNDLMTYREGVQMVWQDPFGSLNPTHNIFHHIA HHHHHHHHCCCCCEEEECCCCHHHHHHHCCHHHHHHHHHHEECCCCCCCCCHHHHHHHHH RPLLIHKKVTPGNKKELEERVYDLLEQVGLIPPKETAAKFPHQLSGGQRQRVNLARNIAV HHHHEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHCCCCHHHHHHHHHHCC GAEVVLADEPTSMLDVSIRAGVLNLMEEMKFEKKMSLLYITHDIATARYIAEDLAVMYVG CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEHHHHHHHHHHHHHHHHHHH HMVEWGDTDEIIHDPQHPYTQLLVSAVPDPSKSIHTELKGNKGEIPLWTPESVGCPFAGR HHHCCCCCHHHHCCCCCHHHHHHHHHCCCCCHHHHHHCCCCCCCCCEECCCCCCCCCCCH CLHASAKCKEQMPGVTKLSDNHFVRCYLYEN HHCCHHHHHHHCCCCEEECCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7997159; 9384377 [H]