Click here to switch to the map view.

The map label for this gene is ydiK [C]

Identifier: 59712743

GI number: 59712743

Start: 2384801

End: 2385886

Strand: Direct

Name: ydiK [C]

Synonym: VF_2136

Alternate gene names: 59712743

Gene position: 2384801-2385886 (Clockwise)

Preceding gene: 59712742

Following gene: 59712744

Centisome position: 82.3

GC content: 38.12

Gene sequence:

>1086_bases
GTGTCTCATTTCAATAAACTGAACTCCAGTCACTGGGTTTTAATTGCCGCTTTGCTTGCTGCTGGTTACGCATGCTTCCT
TTTAATTGAGCCCTACTTAAATCCAATCATCCTCGCTTTTATTATGTCGCTATTATTTGCACCGTTACATAATAAAATCA
GTGATAGACTTCCAAATAGTCCAAACAGCGCAGCAATACTTTCTTGTATGGCACTCACTTTTATTATCGCCATTCCTCTA
TTTTTTGTTTTTATTGCTATCGTGCAACAAGGTGCAACATTCTCAAAAGACGCTTATCACTGGGTAATAGACGGTGGCAT
ACAAACGTTATTTCAGCACCCATTTGTAGCTAAGGTATTGTCTTTTATTAATAAGTATCTACCTTTTGATGCTATCGACC
CTGCAGAAGTCACCCAAAAAGTAGCTCAATTAGCTTCACAAATAGGTACTCGAATTGTCGGTATGAGCGCTCAAATCGTT
GGCGATGTTACCAACGTTCTAATGAATTTCTTTTTAATGTTATTTGTTTTGTTCTTTTTACTTCGCGATCAAGACAAAAT
TATCTCAGCATTTCGTCATGTACTGCCACTTTCTCGCAGTCAAGAAGATCGCTTATTAGATGAGATTGAACAAGTATCTA
AATCGGCGGTTCTTGGTTCATTTCTCACAGCAATAGCACAAGGTATTGCTGGTGGTTTTGCAATGTGGCTTGCAGGATTC
CCGGGGCTATTTTGGGGAACAATGATGGGGTTTGCTTCATTTATTCCAGTTGTCGGTACCGCTTTAATCTGGGTTCCAGC
AACCATTTATCTATTGCTTACTAATCAATGGGAATGGGCAATCTTCTTAACAGCATGGGGCGTGTTAGTTGTAGGGTCTA
TCGATAACATCGTACGTCCACTCTTAATGCAAGGTAATTCAGGTATGAATACCTTACTGATTTTCTTCTCTTTATTAGGT
GGTATTCAACTTTACGGTCTAATTGGTTTAATTTATGGGCCAATCATTTTTGCTCTAACGCTGGTTTTATTTAACATGTA
TGAAACTGAGTTTAAGAGTTTTTTAGATCAACAAGATAAGAACTAA

Upstream 100 bases:

>100_bases
TCTCCATTAATCTTGCTATGATGATCAACTAGCTATATAACTATCTAAATTGCTATCATCTTAATTTCATAAACTGATAA
TCGCATCATAAGGGAATAAT

Downstream 100 bases:

>100_bases
ACCACAATTAAAACTCTTTAAGGCCACTGATTTTCATCATCTTCAGTGGCCTTTTCTTTTCCTTCAAAGCACTTTGTGGG
ACAATCCTGCCAGTTTTTAT

Product: permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 361; Mature: 360

Protein sequence:

>361_residues
MSHFNKLNSSHWVLIAALLAAGYACFLLIEPYLNPIILAFIMSLLFAPLHNKISDRLPNSPNSAAILSCMALTFIIAIPL
FFVFIAIVQQGATFSKDAYHWVIDGGIQTLFQHPFVAKVLSFINKYLPFDAIDPAEVTQKVAQLASQIGTRIVGMSAQIV
GDVTNVLMNFFLMLFVLFFLLRDQDKIISAFRHVLPLSRSQEDRLLDEIEQVSKSAVLGSFLTAIAQGIAGGFAMWLAGF
PGLFWGTMMGFASFIPVVGTALIWVPATIYLLLTNQWEWAIFLTAWGVLVVGSIDNIVRPLLMQGNSGMNTLLIFFSLLG
GIQLYGLIGLIYGPIIFALTLVLFNMYETEFKSFLDQQDKN

Sequences:

>Translated_361_residues
MSHFNKLNSSHWVLIAALLAAGYACFLLIEPYLNPIILAFIMSLLFAPLHNKISDRLPNSPNSAAILSCMALTFIIAIPL
FFVFIAIVQQGATFSKDAYHWVIDGGIQTLFQHPFVAKVLSFINKYLPFDAIDPAEVTQKVAQLASQIGTRIVGMSAQIV
GDVTNVLMNFFLMLFVLFFLLRDQDKIISAFRHVLPLSRSQEDRLLDEIEQVSKSAVLGSFLTAIAQGIAGGFAMWLAGF
PGLFWGTMMGFASFIPVVGTALIWVPATIYLLLTNQWEWAIFLTAWGVLVVGSIDNIVRPLLMQGNSGMNTLLIFFSLLG
GIQLYGLIGLIYGPIIFALTLVLFNMYETEFKSFLDQQDKN
>Mature_360_residues
SHFNKLNSSHWVLIAALLAAGYACFLLIEPYLNPIILAFIMSLLFAPLHNKISDRLPNSPNSAAILSCMALTFIIAIPLF
FVFIAIVQQGATFSKDAYHWVIDGGIQTLFQHPFVAKVLSFINKYLPFDAIDPAEVTQKVAQLASQIGTRIVGMSAQIVG
DVTNVLMNFFLMLFVLFFLLRDQDKIISAFRHVLPLSRSQEDRLLDEIEQVSKSAVLGSFLTAIAQGIAGGFAMWLAGFP
GLFWGTMMGFASFIPVVGTALIWVPATIYLLLTNQWEWAIFLTAWGVLVVGSIDNIVRPLLMQGNSGMNTLLIFFSLLGG
IQLYGLIGLIYGPIIFALTLVLFNMYETEFKSFLDQQDKN

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

Organism=Escherichia coli, GI1787979, Length=224, Percent_Identity=27.6785714285714, Blast_Score=80, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 40006; Mature: 39875

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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C
>Mature Secondary Structure 
SHFNKLNSSHWVLIAALLAAGYACFLLIEPYLNPIILAFIMSLLFAPLHNKISDRLPNS
CCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PNSAAILSCMALTFIIAIPLFFVFIAIVQQGATFSKDAYHWVIDGGIQTLFQHPFVAKVL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEHHHHHHHHHCCHHHHHH
SFINKYLPFDAIDPAEVTQKVAQLASQIGTRIVGMSAQIVGDVTNVLMNFFLMLFVLFFL
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
LRDQDKIISAFRHVLPLSRSQEDRLLDEIEQVSKSAVLGSFLTAIAQGIAGGFAMWLAGF
HCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PGLFWGTMMGFASFIPVVGTALIWVPATIYLLLTNQWEWAIFLTAWGVLVVGSIDNIVRP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHH
LLMQGNSGMNTLLIFFSLLGGIQLYGLIGLIYGPIIFALTLVLFNMYETEFKSFLDQQDK
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
N
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]