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The map label for this gene is flgD [H]

Identifier: 59712482

GI number: 59712482

Start: 2110472

End: 2111182

Strand: Reverse

Name: flgD [H]

Synonym: VF_1875

Alternate gene names: 59712482

Gene position: 2111182-2110472 (Counterclockwise)

Preceding gene: 59712483

Following gene: 59712481

Centisome position: 72.86

GC content: 42.48

Gene sequence:

>711_bases
ATGACTGGAATCAATAACGTTGGTCAAAACGGCTTGTCCTACATCGACCAGTTAAAGAGTCTTCAAGAGGCGAACAAAAC
TGAAAAAACAACGGGCGGCAAAAATGAACTGAAGCAAGAAGACTTCCTTTCATTGCTAACCAAGCAGTTGTCTCAACAAG
ACCCATTTAAACCGGTTGAAAACGACCAGATGATTGCGCAAATGGCTTCATTTGCAACTGTCGACGGTATTGGCAAGATG
AATACACAGTTTGATAGCTTGAATTCATCAATGACATCTAACCAAGCATTACAAGCGTCTTCGCTTGTTGGTCGTGATGT
TCTAGTACCTGGCGCTAAAGGCTTAAAAGAAGCAGATAAAGGTATGGCGGCAATGGTTAAATTGCCTCAAGCAATTAATA
ACCTAATGGTTCGTGTTGAAAACGAACAAGGTCAATTAATTCGTACTTTAGATGTGGGCGCTAAACCTGCTGGCGACACT
CGAGTAGAGTGGGACGGCAAAGATGATAAAGGCAATGCAATGCCTGCTGGTCGCTACAATATTAAAGCTGCTGGCGTGCT
TGATGGAGAAAACAAAGAGTTTGGTGTATCTACATACGCAAACGTAAACAGTGTTCTTCTGGGCAAAGGTGATGGCAATG
TTCTGCTAAATCTTGCTGGTTTTGCTTCACCTATTAAACTGGCAGAAGTGCTAGAAGTAGGTAAGGCATAA

Upstream 100 bases:

>100_bases
TGCTTCTCGTTCATACCAAACGAATGTTCAAGTTGCAGATGCGAGTAAACAAATGTTGCAGAGTACTCTGCGAATGGGTC
AATAAGGATAGGAGGTAGCT

Downstream 100 bases:

>100_bases
AAGGGCGAATATTCAGTGCAGCAACTTATCGCTGCCTGAATACTCCCATTTTCATCATTTAATTATTCATAAAGCTATGC
CAATTCCATTAACACTCTTC

Product: flagellar basal body rod modification protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MTGINNVGQNGLSYIDQLKSLQEANKTEKTTGGKNELKQEDFLSLLTKQLSQQDPFKPVENDQMIAQMASFATVDGIGKM
NTQFDSLNSSMTSNQALQASSLVGRDVLVPGAKGLKEADKGMAAMVKLPQAINNLMVRVENEQGQLIRTLDVGAKPAGDT
RVEWDGKDDKGNAMPAGRYNIKAAGVLDGENKEFGVSTYANVNSVLLGKGDGNVLLNLAGFASPIKLAEVLEVGKA

Sequences:

>Translated_236_residues
MTGINNVGQNGLSYIDQLKSLQEANKTEKTTGGKNELKQEDFLSLLTKQLSQQDPFKPVENDQMIAQMASFATVDGIGKM
NTQFDSLNSSMTSNQALQASSLVGRDVLVPGAKGLKEADKGMAAMVKLPQAINNLMVRVENEQGQLIRTLDVGAKPAGDT
RVEWDGKDDKGNAMPAGRYNIKAAGVLDGENKEFGVSTYANVNSVLLGKGDGNVLLNLAGFASPIKLAEVLEVGKA
>Mature_235_residues
TGINNVGQNGLSYIDQLKSLQEANKTEKTTGGKNELKQEDFLSLLTKQLSQQDPFKPVENDQMIAQMASFATVDGIGKMN
TQFDSLNSSMTSNQALQASSLVGRDVLVPGAKGLKEADKGMAAMVKLPQAINNLMVRVENEQGQLIRTLDVGAKPAGDTR
VEWDGKDDKGNAMPAGRYNIKAAGVLDGENKEFGVSTYANVNSVLLGKGDGNVLLNLAGFASPIKLAEVLEVGKA

Specific function: Required for flagellar hook formation. May act as a scaffolding protein [H]

COG id: COG1843

COG function: function code N; Flagellar hook capping protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgD family [H]

Homologues:

Organism=Escherichia coli, GI1787315, Length=150, Percent_Identity=36, Blast_Score=107, Evalue=1e-24,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005648 [H]

Pfam domain/function: PF03963 FlgD [H]

EC number: NA

Molecular weight: Translated: 25117; Mature: 24986

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGINNVGQNGLSYIDQLKSLQEANKTEKTTGGKNELKQEDFLSLLTKQLSQQDPFKPVE
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
NDQMIAQMASFATVDGIGKMNTQFDSLNSSMTSNQALQASSLVGRDVLVPGAKGLKEADK
CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCHHHHHH
GMAAMVKLPQAINNLMVRVENEQGQLIRTLDVGAKPAGDTRVEWDGKDDKGNAMPAGRYN
HHHHHHHHHHHHHHHEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCE
IKAAGVLDGENKEFGVSTYANVNSVLLGKGDGNVLLNLAGFASPIKLAEVLEVGKA
EEEEEEECCCCCCCCCEECCCCCEEEEECCCCCEEEEECCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
TGINNVGQNGLSYIDQLKSLQEANKTEKTTGGKNELKQEDFLSLLTKQLSQQDPFKPVE
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
NDQMIAQMASFATVDGIGKMNTQFDSLNSSMTSNQALQASSLVGRDVLVPGAKGLKEADK
CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCHHHHHH
GMAAMVKLPQAINNLMVRVENEQGQLIRTLDVGAKPAGDTRVEWDGKDDKGNAMPAGRYN
HHHHHHHHHHHHHHHEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCE
IKAAGVLDGENKEFGVSTYANVNSVLLGKGDGNVLLNLAGFASPIKLAEVLEVGKA
EEEEEEECCCCCCCCCEECCCCCEEEEECCCCCEEEEECCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]