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The map label for this gene is fliN [H]

Identifier: 59712451

GI number: 59712451

Start: 2076237

End: 2076626

Strand: Reverse

Name: fliN [H]

Synonym: VF_1844

Alternate gene names: 59712451

Gene position: 2076626-2076237 (Counterclockwise)

Preceding gene: 59712452

Following gene: 59712450

Centisome position: 71.67

GC content: 41.03

Gene sequence:

>390_bases
ATGGATTCAAATGAACAACAAATGGCTGACGAATGGGCAGCAGCATTAAGTGAAAGTGCAGAAGCTCAAGCAGTAACCGC
ACCTTTAGAAGATCTAGAAGAAAAAGCGCCAGAGTTCAACGAAGATGAACGTCGTAAGCTTGATACGATTCTAGATATTC
CTGTAACGATTTCTATGGAAGTAGGTCGTTCACACATTAGCATTCGTAACTTACTGCAACTTAACCAAGGTTCTGTTGTT
GAACTTGACCGAATTGCTGGTGAGTCTCTAGATGTAATGGTTAATGGCACACTTATCGCTCATGGTGAAGTGGTTGTCGT
GAATGACAAGTTTGGTATCCGTTTAACTGACGTTATCAGCCAAACTGAACGCATCAAAAAACTTCGTTAA

Upstream 100 bases:

>100_bases
AAGCGCCCAGATATGGTGAAAACGGACTTAGCCTTCTTAGGCAAAGACGTATTGTTTGATTTAGATGATGAAGAATAAGA
AACAGAGAAGGTAGTGGATC

Downstream 100 bases:

>100_bases
TTAAACACGAATAGGGATTGGGTATGAAAAAGCTATGGTTATTGGCATTAGTGCCTTTTCCTCTATTTGCAGCTGAAAAG
GCTAATGTTGATTTAGCGGC

Product: flagellar motor switch protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 129

Protein sequence:

>129_residues
MDSNEQQMADEWAAALSESAEAQAVTAPLEDLEEKAPEFNEDERRKLDTILDIPVTISMEVGRSHISIRNLLQLNQGSVV
ELDRIAGESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKKLR

Sequences:

>Translated_129_residues
MDSNEQQMADEWAAALSESAEAQAVTAPLEDLEEKAPEFNEDERRKLDTILDIPVTISMEVGRSHISIRNLLQLNQGSVV
ELDRIAGESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKKLR
>Mature_129_residues
MDSNEQQMADEWAAALSESAEAQAVTAPLEDLEEKAPEFNEDERRKLDTILDIPVTISMEVGRSHISIRNLLQLNQGSVV
ELDRIAGESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKKLR

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side (Potential). Bacterial flagellum basal body (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=127, Percent_Identity=44.8818897637795, Blast_Score=116, Evalue=6e-28,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 14327; Mature: 14327

Theoretical pI: Translated: 4.21; Mature: 4.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSNEQQMADEWAAALSESAEAQAVTAPLEDLEEKAPEFNEDERRKLDTILDIPVTISME
CCCCHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEEC
VGRSHISIRNLLQLNQGSVVELDRIAGESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVIS
CCCCHHHHHHHHHCCCCCEEEHHHHCCCCEEEEECCEEEECCEEEEEECCCCEEHHHHHH
QTERIKKLR
HHHHHHCCC
>Mature Secondary Structure
MDSNEQQMADEWAAALSESAEAQAVTAPLEDLEEKAPEFNEDERRKLDTILDIPVTISME
CCCCHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEEC
VGRSHISIRNLLQLNQGSVVELDRIAGESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVIS
CCCCHHHHHHHHHCCCCCEEEHHHHCCCCEEEEECCEEEECCEEEEEECCCCEEHHHHHH
QTERIKKLR
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7622217; 10984043 [H]