BacMap

Definition	Vibrio fischeri ES114 chromosome I, complete genome.
Accession	NC_006840
Length	2,897,536

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The map label for this gene is 59712337

Identifier: 59712337

GI number: 59712337

Start: 1953374

End: 1954840

Strand: Direct

Name: 59712337

Synonym: VF_1730

Alternate gene names: NA

Gene position: 1953374-1954840 (Clockwise)

Preceding gene: 59712336

Following gene: 172087725

Centisome position: 67.42

GC content: 39.2

Gene sequence:

>1467_bases
ATGAAGCGTGAACAATGGGGTTCTCGTGCAGGATTTATTCTTGCAGCAGTAGGATCTGCTATCGGTTTAGGTAATATCTG
GCGCTTTCCATATATGGCATATGAAAATGGTGGCGGTGCTTTTTTCATTCCTTATTTATTTGCCATGATCACTGCTGGTA
TTCCATTTATGATCATGGAATTTGGTATGGGTCATAAATATAGAGGATCGGCACCACGCACTTTCGCCAAGCTCAACCAA
AAATATGAATGGTTAGGTTGGTTTCAGGTAATGATCGCAGCCGTTATCGCCGTTTATTATGTTGCAGTTATTGGCTGGGC
AATCTCTTATTTCAGCATGTCTTTCTCACAAAGTTGGGGACAAGATACTAATGCTTACTTTTTCAGTGAATATCTACAAT
TAGGTGACAACTCACCAAGTAAGCTAGGTAGTATTCAATGGCATATCGCTATACCTATGCTTCTTGCTTGGGCAATTACT
TTTGCAGCCATTTTTGGTGGGGTGAAAAGTGGTATTGAACGAGCAAGTAAAATTATGATGCCTTTACTGTTTATTATGGT
TATTGCTCTTATTGGTCGTATGGTTTTCTTACCTGGCGCATTGGATGGCCTGAACTACTTATTCCAGCCAGATTTTAGCA
AAATTACGGATCCAAAAGTTTGGTCTGCGGCATACGGACAAATCTTCTTTACCCTAAGTGTTGGCTTCGCCATCATGCTT
GCTTATTCAAGTTACCTTCCTGAAAAATCAGATGTTAATAACAACGCCTTTATGACGGTACTAATTAACTGTGGCTTTTC
TATTATTGCAGGTATTCTTATCTTCTCTGTTCTTGGTTACATGGCTCAAGAACAAGGAAAGCCATTAACTGAAGTCGTTA
GTGCAGGCGTTGGTTTGGCATTTGTTACTATTCCTGCGGCAATTAACTTACTGCCAATACCTTATATTTTAGGCCCACTA
TTCTTCTTAGCACTTGTTGTGGCAGGTTTAAGCTCTCACATATCTATTATTGAAGCCGTTACCTCTGCATTTATCGATAA
ACTAAATTGGTCTCGTAGAAAAGCTGCTTCAGTTGTTTGTGGTTCTGGTTTAATTATTTCAATGGCATTTGCAACAAATG
GCGGTCTACTGCTGTTGGATCTTGTTGATTATTTCATTAACAACATCGCTCTACTTGCAAGCTGCTTGATTGAACTACTT
ATTATGGGTTGGCTAGTAAAACTTGCAGATATTCGTTCACACGTAAACGCTGTATCAGAATTTACAGTTGGTAAATGGTT
TGAAATTTGCCTACGATTCGTAAGCCCTGCTTTCTTAGTCGTTATCCTAGGCACCAATATTATTAATACGCTAACTGATG
GTTATGGTGGTTACGCACAATCAGATTTACTGCTACTTGGCTGGGGCTTAATTGCAGCAATGCTAGTTGTCGGTATTATT
ATTAATAAATCAAGCAAGGAGGCTTAA

Upstream 100 bases:

>100_bases
GGGAATACATCCAATTTAAGCAAAATCAATTTGAATTTATCAGAGAATGATACCAATTAAGCTTCAATTCTCAGGGAAAA
GTTTTTTAAAGGAGTAATTT

Downstream 100 bases:

>100_bases
TATGGAAACGGGTGCAATCATTATGATGATTATTGGTTTAGGGATCACTTGGGGGGGTGCAGCCTTCTGTATTCGTAAAG
CAATGAACAGTAACTAGAAA

Product: sodium/proline symporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 488; Mature: 488

Protein sequence:

>488_residues
MKREQWGSRAGFILAAVGSAIGLGNIWRFPYMAYENGGGAFFIPYLFAMITAGIPFMIMEFGMGHKYRGSAPRTFAKLNQ
KYEWLGWFQVMIAAVIAVYYVAVIGWAISYFSMSFSQSWGQDTNAYFFSEYLQLGDNSPSKLGSIQWHIAIPMLLAWAIT
FAAIFGGVKSGIERASKIMMPLLFIMVIALIGRMVFLPGALDGLNYLFQPDFSKITDPKVWSAAYGQIFFTLSVGFAIML
AYSSYLPEKSDVNNNAFMTVLINCGFSIIAGILIFSVLGYMAQEQGKPLTEVVSAGVGLAFVTIPAAINLLPIPYILGPL
FFLALVVAGLSSHISIIEAVTSAFIDKLNWSRRKAASVVCGSGLIISMAFATNGGLLLLDLVDYFINNIALLASCLIELL
IMGWLVKLADIRSHVNAVSEFTVGKWFEICLRFVSPAFLVVILGTNIINTLTDGYGGYAQSDLLLLGWGLIAAMLVVGII
INKSSKEA

Sequences:

>Translated_488_residues
MKREQWGSRAGFILAAVGSAIGLGNIWRFPYMAYENGGGAFFIPYLFAMITAGIPFMIMEFGMGHKYRGSAPRTFAKLNQ
KYEWLGWFQVMIAAVIAVYYVAVIGWAISYFSMSFSQSWGQDTNAYFFSEYLQLGDNSPSKLGSIQWHIAIPMLLAWAIT
FAAIFGGVKSGIERASKIMMPLLFIMVIALIGRMVFLPGALDGLNYLFQPDFSKITDPKVWSAAYGQIFFTLSVGFAIML
AYSSYLPEKSDVNNNAFMTVLINCGFSIIAGILIFSVLGYMAQEQGKPLTEVVSAGVGLAFVTIPAAINLLPIPYILGPL
FFLALVVAGLSSHISIIEAVTSAFIDKLNWSRRKAASVVCGSGLIISMAFATNGGLLLLDLVDYFINNIALLASCLIELL
IMGWLVKLADIRSHVNAVSEFTVGKWFEICLRFVSPAFLVVILGTNIINTLTDGYGGYAQSDLLLLGWGLIAAMLVVGII
INKSSKEA
>Mature_488_residues
MKREQWGSRAGFILAAVGSAIGLGNIWRFPYMAYENGGGAFFIPYLFAMITAGIPFMIMEFGMGHKYRGSAPRTFAKLNQ
KYEWLGWFQVMIAAVIAVYYVAVIGWAISYFSMSFSQSWGQDTNAYFFSEYLQLGDNSPSKLGSIQWHIAIPMLLAWAIT
FAAIFGGVKSGIERASKIMMPLLFIMVIALIGRMVFLPGALDGLNYLFQPDFSKITDPKVWSAAYGQIFFTLSVGFAIML
AYSSYLPEKSDVNNNAFMTVLINCGFSIIAGILIFSVLGYMAQEQGKPLTEVVSAGVGLAFVTIPAAINLLPIPYILGPL
FFLALVVAGLSSHISIIEAVTSAFIDKLNWSRRKAASVVCGSGLIISMAFATNGGLLLLDLVDYFINNIALLASCLIELL
IMGWLVKLADIRSHVNAVSEFTVGKWFEICLRFVSPAFLVVILGTNIINTLTDGYGGYAQSDLLLLGWGLIAAMLVVGII
INKSSKEA

Specific function: Putative sodium-dependent transporter [H]

COG id: COG0733

COG function: function code R; Na+-dependent transporters of the SNF family

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family [H]

Homologues:

Organism=Homo sapiens, GI21361581, Length=478, Percent_Identity=30.5439330543933, Blast_Score=240, Evalue=2e-63,
Organism=Homo sapiens, GI4507043, Length=480, Percent_Identity=30.8333333333333, Blast_Score=238, Evalue=8e-63,
Organism=Homo sapiens, GI289191377, Length=520, Percent_Identity=29.6153846153846, Blast_Score=231, Evalue=1e-60,
Organism=Homo sapiens, GI289191351, Length=520, Percent_Identity=29.6153846153846, Blast_Score=231, Evalue=1e-60,
Organism=Homo sapiens, GI4557046, Length=520, Percent_Identity=29.6153846153846, Blast_Score=231, Evalue=1e-60,
Organism=Homo sapiens, GI7657587, Length=446, Percent_Identity=31.390134529148, Blast_Score=231, Evalue=1e-60,
Organism=Homo sapiens, GI4507041, Length=507, Percent_Identity=28.9940828402367, Blast_Score=228, Evalue=1e-59,
Organism=Homo sapiens, GI171184408, Length=445, Percent_Identity=31.9101123595506, Blast_Score=226, Evalue=6e-59,
Organism=Homo sapiens, GI171184406, Length=445, Percent_Identity=31.9101123595506, Blast_Score=226, Evalue=6e-59,
Organism=Homo sapiens, GI171184404, Length=445, Percent_Identity=31.9101123595506, Blast_Score=226, Evalue=6e-59,
Organism=Homo sapiens, GI134304856, Length=517, Percent_Identity=29.5938104448743, Blast_Score=220, Evalue=3e-57,
Organism=Homo sapiens, GI188528618, Length=466, Percent_Identity=30.0429184549356, Blast_Score=218, Evalue=8e-57,
Organism=Homo sapiens, GI197276623, Length=523, Percent_Identity=28.1070745697897, Blast_Score=207, Evalue=2e-53,
Organism=Homo sapiens, GI54607094, Length=523, Percent_Identity=28.1070745697897, Blast_Score=207, Evalue=2e-53,
Organism=Homo sapiens, GI5032097, Length=494, Percent_Identity=28.1376518218623, Blast_Score=204, Evalue=1e-52,
Organism=Homo sapiens, GI67782317, Length=509, Percent_Identity=28.8801571709234, Blast_Score=198, Evalue=1e-50,
Organism=Homo sapiens, GI67782313, Length=509, Percent_Identity=28.8801571709234, Blast_Score=197, Evalue=2e-50,
Organism=Homo sapiens, GI67782315, Length=509, Percent_Identity=28.8801571709234, Blast_Score=197, Evalue=2e-50,
Organism=Homo sapiens, GI218563756, Length=494, Percent_Identity=27.9352226720648, Blast_Score=196, Evalue=4e-50,
Organism=Homo sapiens, GI92859670, Length=538, Percent_Identity=28.0669144981413, Blast_Score=194, Evalue=1e-49,
Organism=Homo sapiens, GI6005715, Length=539, Percent_Identity=26.7161410018553, Blast_Score=184, Evalue=2e-46,
Organism=Homo sapiens, GI58219014, Length=309, Percent_Identity=31.0679611650485, Blast_Score=169, Evalue=5e-42,
Organism=Homo sapiens, GI194018524, Length=524, Percent_Identity=26.7175572519084, Blast_Score=166, Evalue=4e-41,
Organism=Homo sapiens, GI33354281, Length=309, Percent_Identity=31.3915857605178, Blast_Score=166, Evalue=5e-41,
Organism=Homo sapiens, GI51468073, Length=521, Percent_Identity=23.2245681381958, Blast_Score=164, Evalue=2e-40,
Organism=Homo sapiens, GI289191353, Length=438, Percent_Identity=26.9406392694064, Blast_Score=157, Evalue=2e-38,
Organism=Homo sapiens, GI300360519, Length=308, Percent_Identity=29.8701298701299, Blast_Score=155, Evalue=1e-37,
Organism=Homo sapiens, GI11181770, Length=301, Percent_Identity=30.5647840531561, Blast_Score=143, Evalue=4e-34,
Organism=Homo sapiens, GI218563758, Length=316, Percent_Identity=29.4303797468354, Blast_Score=140, Evalue=4e-33,
Organism=Homo sapiens, GI12408638, Length=301, Percent_Identity=27.2425249169435, Blast_Score=114, Evalue=3e-25,
Organism=Homo sapiens, GI21361693, Length=220, Percent_Identity=30.9090909090909, Blast_Score=108, Evalue=1e-23,
Organism=Homo sapiens, GI226437581, Length=258, Percent_Identity=27.906976744186, Blast_Score=105, Evalue=8e-23,
Organism=Homo sapiens, GI55749589, Length=304, Percent_Identity=25, Blast_Score=97, Evalue=5e-20,
Organism=Homo sapiens, GI197276625, Length=127, Percent_Identity=33.8582677165354, Blast_Score=96, Evalue=9e-20,
Organism=Caenorhabditis elegans, GI17555248, Length=509, Percent_Identity=29.2730844793713, Blast_Score=238, Evalue=4e-63,
Organism=Caenorhabditis elegans, GI71995588, Length=492, Percent_Identity=28.8617886178862, Blast_Score=211, Evalue=7e-55,
Organism=Caenorhabditis elegans, GI133952791, Length=510, Percent_Identity=29.0196078431373, Blast_Score=205, Evalue=4e-53,
Organism=Caenorhabditis elegans, GI17554804, Length=461, Percent_Identity=30.1518438177874, Blast_Score=189, Evalue=4e-48,
Organism=Caenorhabditis elegans, GI25146584, Length=489, Percent_Identity=27.4028629856851, Blast_Score=179, Evalue=2e-45,
Organism=Caenorhabditis elegans, GI212642127, Length=521, Percent_Identity=27.447216890595, Blast_Score=179, Evalue=3e-45,
Organism=Caenorhabditis elegans, GI17535731, Length=484, Percent_Identity=25.6198347107438, Blast_Score=162, Evalue=3e-40,
Organism=Caenorhabditis elegans, GI17569475, Length=542, Percent_Identity=23.8007380073801, Blast_Score=161, Evalue=7e-40,
Organism=Caenorhabditis elegans, GI71998244, Length=408, Percent_Identity=29.1666666666667, Blast_Score=157, Evalue=1e-38,
Organism=Caenorhabditis elegans, GI115534083, Length=506, Percent_Identity=21.9367588932806, Blast_Score=141, Evalue=1e-33,
Organism=Caenorhabditis elegans, GI17542050, Length=131, Percent_Identity=36.6412213740458, Blast_Score=105, Evalue=5e-23,
Organism=Caenorhabditis elegans, GI17542048, Length=426, Percent_Identity=22.7699530516432, Blast_Score=66, Evalue=5e-11,
Organism=Drosophila melanogaster, GI45550877, Length=515, Percent_Identity=28.9320388349515, Blast_Score=227, Evalue=1e-59,
Organism=Drosophila melanogaster, GI24582567, Length=471, Percent_Identity=30.3609341825902, Blast_Score=222, Evalue=6e-58,
Organism=Drosophila melanogaster, GI221329674, Length=501, Percent_Identity=28.9421157684631, Blast_Score=219, Evalue=4e-57,
Organism=Drosophila melanogaster, GI24639514, Length=501, Percent_Identity=28.9421157684631, Blast_Score=218, Evalue=6e-57,
Organism=Drosophila melanogaster, GI24762620, Length=477, Percent_Identity=30.8176100628931, Blast_Score=216, Evalue=3e-56,
Organism=Drosophila melanogaster, GI281365034, Length=485, Percent_Identity=30.5154639175258, Blast_Score=215, Evalue=7e-56,
Organism=Drosophila melanogaster, GI281363702, Length=469, Percent_Identity=28.997867803838, Blast_Score=212, Evalue=5e-55,
Organism=Drosophila melanogaster, GI19921936, Length=513, Percent_Identity=28.4600389863548, Blast_Score=212, Evalue=5e-55,
Organism=Drosophila melanogaster, GI24639516, Length=521, Percent_Identity=27.831094049904, Blast_Score=211, Evalue=1e-54,
Organism=Drosophila melanogaster, GI45551183, Length=428, Percent_Identity=31.0747663551402, Blast_Score=209, Evalue=3e-54,
Organism=Drosophila melanogaster, GI45551088, Length=481, Percent_Identity=29.1060291060291, Blast_Score=209, Evalue=5e-54,
Organism=Drosophila melanogaster, GI24652942, Length=481, Percent_Identity=29.1060291060291, Blast_Score=208, Evalue=5e-54,
Organism=Drosophila melanogaster, GI19921352, Length=491, Percent_Identity=29.7352342158859, Blast_Score=206, Evalue=4e-53,
Organism=Drosophila melanogaster, GI24584353, Length=491, Percent_Identity=29.7352342158859, Blast_Score=206, Evalue=4e-53,
Organism=Drosophila melanogaster, GI24661428, Length=493, Percent_Identity=28.6004056795132, Blast_Score=203, Evalue=2e-52,
Organism=Drosophila melanogaster, GI281364136, Length=529, Percent_Identity=29.6786389413989, Blast_Score=198, Evalue=6e-51,
Organism=Drosophila melanogaster, GI17136952, Length=504, Percent_Identity=26.1904761904762, Blast_Score=194, Evalue=2e-49,
Organism=Drosophila melanogaster, GI281364394, Length=504, Percent_Identity=26.1904761904762, Blast_Score=189, Evalue=4e-48,
Organism=Drosophila melanogaster, GI28574704, Length=504, Percent_Identity=26.1904761904762, Blast_Score=189, Evalue=4e-48,
Organism=Drosophila melanogaster, GI17136950, Length=504, Percent_Identity=26.1904761904762, Blast_Score=189, Evalue=4e-48,
Organism=Drosophila melanogaster, GI28574702, Length=504, Percent_Identity=26.1904761904762, Blast_Score=189, Evalue=4e-48,
Organism=Drosophila melanogaster, GI24639853, Length=495, Percent_Identity=24.6464646464646, Blast_Score=176, Evalue=5e-44,
Organism=Drosophila melanogaster, GI24655079, Length=520, Percent_Identity=25.5769230769231, Blast_Score=173, Evalue=2e-43,
Organism=Drosophila melanogaster, GI281363700, Length=330, Percent_Identity=31.5151515151515, Blast_Score=172, Evalue=7e-43,
Organism=Drosophila melanogaster, GI24582569, Length=433, Percent_Identity=28.175519630485, Blast_Score=171, Evalue=1e-42,
Organism=Drosophila melanogaster, GI24654186, Length=354, Percent_Identity=30.225988700565, Blast_Score=162, Evalue=4e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000175 [H]

Pfam domain/function: PF00209 SNF [H]

EC number: NA

Molecular weight: Translated: 53226; Mature: 53226

Theoretical pI: Translated: 8.25; Mature: 8.25

Prosite motif: PS00610 NA_NEUROTRAN_SYMP_1 ; PS50267 NA_NEUROTRAN_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HCCCCCCC
>Mature Secondary Structure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HCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]