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The map label for this gene is yeaM [H]

Identifier: 59712323

GI number: 59712323

Start: 1932690

End: 1933505

Strand: Reverse

Name: yeaM [H]

Synonym: VF_1716

Alternate gene names: 59712323

Gene position: 1933505-1932690 (Counterclockwise)

Preceding gene: 59712325

Following gene: 59712322

Centisome position: 66.73

GC content: 36.4

Gene sequence:

>816_bases
ATGCCATTTAGGACACCTAACATAGCGAACATGACAGATAAAAAATTCCTGCCTCAATTAGATGAAAACCTGCCAACGGA
TGTGTTTTTTCATTATTTTTTTCTTGAGGCAAAAACAGAAACGTTATCGCATTCACATCCTTGGGGTCAGTTACATTTGA
TTAAGCAAGGGCGACTTGAAATGGAAGTGGATAAGCAAAAAATGTTTTGTCCTGCCAATTATGCGATTTGGACGCCAGCG
CATTTATTGCATCGTGCGTTTAATCATAATGATGTTGAATATTGTGCGATTAATATTGAATTTGAATTGAGTCAGAAGTT
GCCTACTAGCGCTTGTATGTTTCCTTTAACGCCATTATTAAGGGCTATAGTAGATGATCTTGTTGAGCGTCAAACCACAG
AAGTTCTTAGCACAGAAGATAAATATTTAAGTCATGTTCTGATAGAGCGTTTATCAAAAACCAATCCAATAGAAAACTAT
CTTCCTTTTACGGATGATAAATTATTAGCGCCTATTTTAATGCAACTACAAGAAAATCCTGCTGATGATTCAAGTTTAGA
AATATGGGCAAAGCGGGTGTTTAGTACTGAAAGAACCTTGGCAAGGCGCTTTCAAAAAGAGTTGAAAATGAGTTTTAATG
ATTGGCGTCAGAGGGCTAAATTAGCGAAGGCTATGGTTTTGTTAAAAGATGCTATATCAATCAATGAAATTGCATATCAA
TTAGGCTATAGCCAAGGTTCCTCTTTTATTAAGATGTTTCGTAAACATACGGGAGTCACTCCTGAACAGTTTAGAAAAGA
GCAGCAGGGAAAATAG

Upstream 100 bases:

>100_bases
AGCCCAGATAAATACGGCTGTAATAGGGAAGAAGATAGTCATAAAAACCTCTATCAGAAATAATTGATAGAATTGTCACA
TCAATAGCGAGCAGAGTTGT

Downstream 100 bases:

>100_bases
ATAACTATAGAGTAATCACTCTTATTGATTTTTATAATCAGATAGTTAGATTATTTTTGTATGAATATATTAATGCTGTG
ATGGGAAATGCAGTGTGAAG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 270

Protein sequence:

>271_residues
MPFRTPNIANMTDKKFLPQLDENLPTDVFFHYFFLEAKTETLSHSHPWGQLHLIKQGRLEMEVDKQKMFCPANYAIWTPA
HLLHRAFNHNDVEYCAINIEFELSQKLPTSACMFPLTPLLRAIVDDLVERQTTEVLSTEDKYLSHVLIERLSKTNPIENY
LPFTDDKLLAPILMQLQENPADDSSLEIWAKRVFSTERTLARRFQKELKMSFNDWRQRAKLAKAMVLLKDAISINEIAYQ
LGYSQGSSFIKMFRKHTGVTPEQFRKEQQGK

Sequences:

>Translated_271_residues
MPFRTPNIANMTDKKFLPQLDENLPTDVFFHYFFLEAKTETLSHSHPWGQLHLIKQGRLEMEVDKQKMFCPANYAIWTPA
HLLHRAFNHNDVEYCAINIEFELSQKLPTSACMFPLTPLLRAIVDDLVERQTTEVLSTEDKYLSHVLIERLSKTNPIENY
LPFTDDKLLAPILMQLQENPADDSSLEIWAKRVFSTERTLARRFQKELKMSFNDWRQRAKLAKAMVLLKDAISINEIAYQ
LGYSQGSSFIKMFRKHTGVTPEQFRKEQQGK
>Mature_270_residues
PFRTPNIANMTDKKFLPQLDENLPTDVFFHYFFLEAKTETLSHSHPWGQLHLIKQGRLEMEVDKQKMFCPANYAIWTPAH
LLHRAFNHNDVEYCAINIEFELSQKLPTSACMFPLTPLLRAIVDDLVERQTTEVLSTEDKYLSHVLIERLSKTNPIENYL
PFTDDKLLAPILMQLQENPADDSSLEIWAKRVFSTERTLARRFQKELKMSFNDWRQRAKLAKAMVLLKDAISINEIAYQL
GYSQGSSFIKMFRKHTGVTPEQFRKEQQGK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=235, Percent_Identity=29.3617021276596, Blast_Score=108, Evalue=4e-25,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 31667; Mature: 31536

Theoretical pI: Translated: 7.69; Mature: 7.69

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPFRTPNIANMTDKKFLPQLDENLPTDVFFHYFFLEAKTETLSHSHPWGQLHLIKQGRLE
CCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC
MEVDKQKMFCPANYAIWTPAHLLHRAFNHNDVEYCAINIEFELSQKLPTSACMFPLTPLL
EEECHHHCCCCCCCCEECHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHH
RAIVDDLVERQTTEVLSTEDKYLSHVLIERLSKTNPIENYLPFTDDKLLAPILMQLQENP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHCCC
ADDSSLEIWAKRVFSTERTLARRFQKELKMSFNDWRQRAKLAKAMVLLKDAISINEIAYQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGYSQGSSFIKMFRKHTGVTPEQFRKEQQGK
HCCCCCHHHHHHHHHHCCCCHHHHHHHHCCC
>Mature Secondary Structure 
PFRTPNIANMTDKKFLPQLDENLPTDVFFHYFFLEAKTETLSHSHPWGQLHLIKQGRLE
CCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC
MEVDKQKMFCPANYAIWTPAHLLHRAFNHNDVEYCAINIEFELSQKLPTSACMFPLTPLL
EEECHHHCCCCCCCCEECHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHH
RAIVDDLVERQTTEVLSTEDKYLSHVLIERLSKTNPIENYLPFTDDKLLAPILMQLQENP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHCCC
ADDSSLEIWAKRVFSTERTLARRFQKELKMSFNDWRQRAKLAKAMVLLKDAISINEIAYQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGYSQGSSFIKMFRKHTGVTPEQFRKEQQGK
HCCCCCHHHHHHHHHHCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]