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The map label for this gene is yoaA [H]

Identifier: 59712320

GI number: 59712320

Start: 1928642

End: 1930600

Strand: Reverse

Name: yoaA [H]

Synonym: VF_1713

Alternate gene names: 59712320

Gene position: 1930600-1928642 (Counterclockwise)

Preceding gene: 59712322

Following gene: 59712319

Centisome position: 66.63

GC content: 40.43

Gene sequence:

>1959_bases
ATGATTGCCAAGATTTTTTCGTCATCAGGTGCATTAGGTAAAGCCATTCCCGGTTTTCAACCTCGTCAACCCCAGTTGGA
TATGGCTCATGCTGTTCATGATGCAATTAAAAATGGTACTCAATTAGTCGTTGAAGCCGGAACTGGTACGGGTAAAACGT
TCGCTTATCTTGCGCCTGCTCTGGTTAGTGGTAAAAAAACCATCATTAGTACTGGGTCCAAAAACCTTCAAGAACAACTT
TTCCATCGTGATTTACCCTTAATGGTGTCATCTCTTGGTTTTTATGGCCAAGTGGCTTTGCTAAAAGGTCGCTCAAATTA
TTTGTGTCCTGAACGATTGAATCGCCAATTAATTGAAAGTCATACCCCTCAAGCGGATCCTGAATTACTGACGCAATTAG
TTAAAGTGAGAACCTGGTCTTCTGAAACCAAAACGGGAGATTTAGGTGACTGTGAAGCGATTGCTGAAGATAGTCCAATC
ATTCCTTCTATCACATCAACTAACGATAATTGTTTAGGTAAAGAGTGCCCAAGTTTTGAAGAGTGTTTTGTTGTTAAGGC
GCGTAAAAAAGCACTTGATGCGGATGTTGTGGTTGTTAACCATCACTTATTTCTTGCTGATTTGGCGATTAAAGAAACGG
GATTTGGTGAATTAATCCCCGAGGCGGATATTTTTATTTTTGATGAGGCCCATCAGCTACCTGATATTGCGAGCCAATAT
TTTGGGCAAAGTTTATCCAGTCGCCAATTAACCGAATTAGCAAAAGACATTGAAATAGGTTATCGCACTGAAGCAAGAGA
TATGCGTCAATTGCAAAAAGTGGCAGAACGCTTAGCTGGTGCCGCAATGGATTTGCGTATTATTTTAGGGGATACCAGTT
TTAGAGGTAATTGGCGAGAGGCGATAAAATCACAGGCTGTTCAACGCGAAATTTTGCGCATCAATGATGCCTTTGAACTT
GCTTATGACGTATTAAAATTGGCCTTAGGTCGCAGTCAATTATTAGATGCCGCTTTTGAGCGATGCACGTTATTGAAAAA
TCGTTTAGAGCGAGTATGTGATACGACAATAAGTGGTTACTCATATTGGTATGAATGTACTCCAAGACATTTTAGTTTAC
ATATAACACCATTGTCGGTTGCTGATAAGTTTAAAGAGCAAGTGGCAGAAAAAGAGGGGGCGTGGATTTTTACGTCGGCA
ACGTTAGCGGTTAATGATGATTTCTCGCATTTTACGCAACGTTTGGGGTTAGAGCCGACAAAACAGTTTTCACTGCCAAG
TCCATTTGATTATCAATCTCAGGCTTTATTGTGCGTACCTCGATTTTTACCTGAGCCAAATAGCTATGGCGTTGCTCCTA
AGTTGGTTGAATTACTGGAACCCGTTATTAAGCAAAACCAAGGTCGCTGTTTCTTTTTATGTACATCACATCAAATGATG
AGAGACTTAGCTGAACTCTTTAGGCAAACACTTGATTTACCAGTATTAGTTCAAGGTGAAACCACTAAGCAAAAGTTACT
TACAGAGTTTATGGAACTGGGTAATGCATTGTTGGTTGCAACTGGAGCTTTCTGGGAAGGCATTGATGTTAGAGGTGATG
CCTTAAGCTGTGTTATCATTGATAAATTACCTTTTACGGCACCGGACGATCCGCTATTAAAAGCGCGTATTGAAGATTGT
CAATTAAGCGGTGGGGATGCCTTTTCTCAAGTGCAGATCCCTGATGCGGTGATAACCTTAAAACAGGGTGTTGGGCGTCT
TATTCGAGATACCAAAGATAAAGGGGTATTGGTGATTTGTGACAATCGTTTAGTGACTCGTCCTTATGGCTCGACTTTTT
TACAAAGTTTGCCACCAATACCAAGAACACGAGATTTGAAGAAAGTGTCTGAATTTTTAGCACAAACGAATCAGACAGAA
GTAGAACAAGTAGAACAAAAAGCCATTTTAGAAAATTGA

Upstream 100 bases:

>100_bases
GTAAATTAGCTTCGATTCAGTACAAACTTCCCGTTTAGTTTCTTCTGGTTTCTTGGCATAATCTCTTTCTCTTTTTTATT
CACGATGGATATCGGTTGAT

Downstream 100 bases:

>100_bases
GGCATTAATGAGCGCAAAAATTTTAGCGGTTGATACCGCCACTGAAAACTGTTCTGTCGCACTGATTGTTGACGGAAAAG
TCTATTCTCGACGTGCAGTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 652; Mature: 652

Protein sequence:

>652_residues
MIAKIFSSSGALGKAIPGFQPRQPQLDMAHAVHDAIKNGTQLVVEAGTGTGKTFAYLAPALVSGKKTIISTGSKNLQEQL
FHRDLPLMVSSLGFYGQVALLKGRSNYLCPERLNRQLIESHTPQADPELLTQLVKVRTWSSETKTGDLGDCEAIAEDSPI
IPSITSTNDNCLGKECPSFEECFVVKARKKALDADVVVVNHHLFLADLAIKETGFGELIPEADIFIFDEAHQLPDIASQY
FGQSLSSRQLTELAKDIEIGYRTEARDMRQLQKVAERLAGAAMDLRIILGDTSFRGNWREAIKSQAVQREILRINDAFEL
AYDVLKLALGRSQLLDAAFERCTLLKNRLERVCDTTISGYSYWYECTPRHFSLHITPLSVADKFKEQVAEKEGAWIFTSA
TLAVNDDFSHFTQRLGLEPTKQFSLPSPFDYQSQALLCVPRFLPEPNSYGVAPKLVELLEPVIKQNQGRCFFLCTSHQMM
RDLAELFRQTLDLPVLVQGETTKQKLLTEFMELGNALLVATGAFWEGIDVRGDALSCVIIDKLPFTAPDDPLLKARIEDC
QLSGGDAFSQVQIPDAVITLKQGVGRLIRDTKDKGVLVICDNRLVTRPYGSTFLQSLPPIPRTRDLKKVSEFLAQTNQTE
VEQVEQKAILEN

Sequences:

>Translated_652_residues
MIAKIFSSSGALGKAIPGFQPRQPQLDMAHAVHDAIKNGTQLVVEAGTGTGKTFAYLAPALVSGKKTIISTGSKNLQEQL
FHRDLPLMVSSLGFYGQVALLKGRSNYLCPERLNRQLIESHTPQADPELLTQLVKVRTWSSETKTGDLGDCEAIAEDSPI
IPSITSTNDNCLGKECPSFEECFVVKARKKALDADVVVVNHHLFLADLAIKETGFGELIPEADIFIFDEAHQLPDIASQY
FGQSLSSRQLTELAKDIEIGYRTEARDMRQLQKVAERLAGAAMDLRIILGDTSFRGNWREAIKSQAVQREILRINDAFEL
AYDVLKLALGRSQLLDAAFERCTLLKNRLERVCDTTISGYSYWYECTPRHFSLHITPLSVADKFKEQVAEKEGAWIFTSA
TLAVNDDFSHFTQRLGLEPTKQFSLPSPFDYQSQALLCVPRFLPEPNSYGVAPKLVELLEPVIKQNQGRCFFLCTSHQMM
RDLAELFRQTLDLPVLVQGETTKQKLLTEFMELGNALLVATGAFWEGIDVRGDALSCVIIDKLPFTAPDDPLLKARIEDC
QLSGGDAFSQVQIPDAVITLKQGVGRLIRDTKDKGVLVICDNRLVTRPYGSTFLQSLPPIPRTRDLKKVSEFLAQTNQTE
VEQVEQKAILEN
>Mature_652_residues
MIAKIFSSSGALGKAIPGFQPRQPQLDMAHAVHDAIKNGTQLVVEAGTGTGKTFAYLAPALVSGKKTIISTGSKNLQEQL
FHRDLPLMVSSLGFYGQVALLKGRSNYLCPERLNRQLIESHTPQADPELLTQLVKVRTWSSETKTGDLGDCEAIAEDSPI
IPSITSTNDNCLGKECPSFEECFVVKARKKALDADVVVVNHHLFLADLAIKETGFGELIPEADIFIFDEAHQLPDIASQY
FGQSLSSRQLTELAKDIEIGYRTEARDMRQLQKVAERLAGAAMDLRIILGDTSFRGNWREAIKSQAVQREILRINDAFEL
AYDVLKLALGRSQLLDAAFERCTLLKNRLERVCDTTISGYSYWYECTPRHFSLHITPLSVADKFKEQVAEKEGAWIFTSA
TLAVNDDFSHFTQRLGLEPTKQFSLPSPFDYQSQALLCVPRFLPEPNSYGVAPKLVELLEPVIKQNQGRCFFLCTSHQMM
RDLAELFRQTLDLPVLVQGETTKQKLLTEFMELGNALLVATGAFWEGIDVRGDALSCVIIDKLPFTAPDDPLLKARIEDC
QLSGGDAFSQVQIPDAVITLKQGVGRLIRDTKDKGVLVICDNRLVTRPYGSTFLQSLPPIPRTRDLKKVSEFLAQTNQTE
VEQVEQKAILEN

Specific function: Unknown

COG id: COG1199

COG function: function code KL; Rad3-related DNA helicases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase ATP-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788110, Length=629, Percent_Identity=65.6597774244833, Blast_Score=863, Evalue=0.0,
Organism=Escherichia coli, GI1787018, Length=256, Percent_Identity=30.859375, Blast_Score=103, Evalue=3e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR010614
- InterPro:   IPR014013
- InterPro:   IPR006555
- InterPro:   IPR006935 [H]

Pfam domain/function: PF06733 DEAD_2; PF04851 ResIII [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 72526; Mature: 72526

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAKIFSSSGALGKAIPGFQPRQPQLDMAHAVHDAIKNGTQLVVEAGTGTGKTFAYLAPA
CCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH
LVSGKKTIISTGSKNLQEQLFHRDLPLMVSSLGFYGQVALLKGRSNYLCPERLNRQLIES
HHCCCEEEEECCCHHHHHHHHHCCHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHC
HTPQADPELLTQLVKVRTWSSETKTGDLGDCEAIAEDSPIIPSITSTNDNCLGKECPSFE
CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCHH
ECFVVKARKKALDADVVVVNHHLFLADLAIKETGFGELIPEADIFIFDEAHQLPDIASQY
HHHHHHHHHHCCCCCEEEEECCEEEHHHHHHCCCCCCCCCCCCEEEECCCCCCHHHHHHH
FGQSLSSRQLTELAKDIEIGYRTEARDMRQLQKVAERLAGAAMDLRIILGDTSFRGNWRE
HCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHH
AIKSQAVQREILRINDAFELAYDVLKLALGRSQLLDAAFERCTLLKNRLERVCDTTISGY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SYWYECTPRHFSLHITPLSVADKFKEQVAEKEGAWIFTSATLAVNDDFSHFTQRLGLEPT
EEEEEECCCEEEEEEEHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCHHHHHHHHCCCCC
KQFSLPSPFDYQSQALLCVPRFLPEPNSYGVAPKLVELLEPVIKQNQGRCFFLCTSHQMM
CCCCCCCCCCCCCCEEEEEHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHHH
RDLAELFRQTLDLPVLVQGETTKQKLLTEFMELGNALLVATGAFWEGIDVRGDALSCVII
HHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCEEEEEEE
DKLPFTAPDDPLLKARIEDCQLSGGDAFSQVQIPDAVITLKQGVGRLIRDTKDKGVLVIC
ECCCCCCCCCHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCEEEEE
DNRLVTRPYGSTFLQSLPPIPRTRDLKKVSEFLAQTNQTEVEQVEQKAILEN
CCEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MIAKIFSSSGALGKAIPGFQPRQPQLDMAHAVHDAIKNGTQLVVEAGTGTGKTFAYLAPA
CCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH
LVSGKKTIISTGSKNLQEQLFHRDLPLMVSSLGFYGQVALLKGRSNYLCPERLNRQLIES
HHCCCEEEEECCCHHHHHHHHHCCHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHC
HTPQADPELLTQLVKVRTWSSETKTGDLGDCEAIAEDSPIIPSITSTNDNCLGKECPSFE
CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCHH
ECFVVKARKKALDADVVVVNHHLFLADLAIKETGFGELIPEADIFIFDEAHQLPDIASQY
HHHHHHHHHHCCCCCEEEEECCEEEHHHHHHCCCCCCCCCCCCEEEECCCCCCHHHHHHH
FGQSLSSRQLTELAKDIEIGYRTEARDMRQLQKVAERLAGAAMDLRIILGDTSFRGNWRE
HCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHH
AIKSQAVQREILRINDAFELAYDVLKLALGRSQLLDAAFERCTLLKNRLERVCDTTISGY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SYWYECTPRHFSLHITPLSVADKFKEQVAEKEGAWIFTSATLAVNDDFSHFTQRLGLEPT
EEEEEECCCEEEEEEEHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCHHHHHHHHCCCCC
KQFSLPSPFDYQSQALLCVPRFLPEPNSYGVAPKLVELLEPVIKQNQGRCFFLCTSHQMM
CCCCCCCCCCCCCCEEEEEHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHHH
RDLAELFRQTLDLPVLVQGETTKQKLLTEFMELGNALLVATGAFWEGIDVRGDALSCVII
HHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCEEEEEEE
DKLPFTAPDDPLLKARIEDCQLSGGDAFSQVQIPDAVITLKQGVGRLIRDTKDKGVLVIC
ECCCCCCCCCHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCEEEEE
DNRLVTRPYGSTFLQSLPPIPRTRDLKKVSEFLAQTNQTEVEQVEQKAILEN
CCEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]