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The map label for this gene is 59712121

Identifier: 59712121

GI number: 59712121

Start: 1689343

End: 1689873

Strand: Reverse

Name: 59712121

Synonym: VF_1514

Alternate gene names: NA

Gene position: 1689873-1689343 (Counterclockwise)

Preceding gene: 172087714

Following gene: 59712119

Centisome position: 58.32

GC content: 38.23

Gene sequence:

>531_bases
ATGAACTTTAATCGTATCGTCTGTTTTGATTTAGAAATGTGCTGTTGGAATGAAAATGGCAAAGGTAGAACAGGGGAGAT
CATTGAGGTTGGTTTGGCTGAGATTGATCTTACAAAAGGTGAAGTTGTTAAGCGTGCGCAATATTATGTAAAACCAGAGA
AAGATGAAATCTCTCTATTTTGTGTCGATCTCACTGGTATATCTCCACGTAAAATTGAAAAGCAAGGTCGCCCATTAGCT
GATGTATTGAAATCAATGGTTAAAAACTTTGGCGGAACGAATAAAATTTATGCTGCGTGGGGACATGATGAGCAAATCCT
TGAAGCGGAATGTAAAGCAAAAGGAATTGAAGTTCCGTTTAATGAGTTTTTGAATCTTGCCACTATCTATCGAATTCGTT
CTCGTAAGAAAAATGAACGAATGGGGCAACGTAGGGCAATGGAAGAATTGAATATCGAATGGGAAGGCCGTCAGCATTCA
GGATATGTTGATGCGTATAACCTAGCCCAGTTAGCATTGAAAATATTGTAA

Upstream 100 bases:

>100_bases
TCGAGGCTGAATTTTCAGCAATCAAATCTCATAGTGTCGCGCTTAGCGCTGAGTTTAGGTAGAATAGCGCTTCGCCTTTT
ATTGTGTACCAAGGATCTTC

Downstream 100 bases:

>100_bases
AAACTTAAAAATAAAAAAGGAGCCAATGGGCTCCTTTTTTGTATCTGTTGATACTAAACTCGTATTACTTGTTATCGCGT
TTGTATAGTTCAGTGAATGA

Product: exonuclease KapD

Products: NA

Alternate protein names: Exonuclease; Exonuclease Superfamily Protein; Exonuclease KapD; Exonuclease Superfamily

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MNFNRIVCFDLEMCCWNENGKGRTGEIIEVGLAEIDLTKGEVVKRAQYYVKPEKDEISLFCVDLTGISPRKIEKQGRPLA
DVLKSMVKNFGGTNKIYAAWGHDEQILEAECKAKGIEVPFNEFLNLATIYRIRSRKKNERMGQRRAMEELNIEWEGRQHS
GYVDAYNLAQLALKIL

Sequences:

>Translated_176_residues
MNFNRIVCFDLEMCCWNENGKGRTGEIIEVGLAEIDLTKGEVVKRAQYYVKPEKDEISLFCVDLTGISPRKIEKQGRPLA
DVLKSMVKNFGGTNKIYAAWGHDEQILEAECKAKGIEVPFNEFLNLATIYRIRSRKKNERMGQRRAMEELNIEWEGRQHS
GYVDAYNLAQLALKIL
>Mature_176_residues
MNFNRIVCFDLEMCCWNENGKGRTGEIIEVGLAEIDLTKGEVVKRAQYYVKPEKDEISLFCVDLTGISPRKIEKQGRPLA
DVLKSMVKNFGGTNKIYAAWGHDEQILEAECKAKGIEVPFNEFLNLATIYRIRSRKKNERMGQRRAMEELNIEWEGRQHS
GYVDAYNLAQLALKIL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20219; Mature: 20219

Theoretical pI: Translated: 7.84; Mature: 7.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFNRIVCFDLEMCCWNENGKGRTGEIIEVGLAEIDLTKGEVVKRAQYYVKPEKDEISLF
CCCCEEEEEEEEEEEECCCCCCCCCCEEEECHHEEECCHHHHHHHHHHEECCCCCCEEEE
CVDLTGISPRKIEKQGRPLADVLKSMVKNFGGTNKIYAAWGHDEQILEAECKAKGIEVPF
EEEECCCCHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCCCCH
NEFLNLATIYRIRSRKKNERMGQRRAMEELNIEWEGRQHSGYVDAYNLAQLALKIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MNFNRIVCFDLEMCCWNENGKGRTGEIIEVGLAEIDLTKGEVVKRAQYYVKPEKDEISLF
CCCCEEEEEEEEEEEECCCCCCCCCCEEEECHHEEECCHHHHHHHHHHEECCCCCCEEEE
CVDLTGISPRKIEKQGRPLADVLKSMVKNFGGTNKIYAAWGHDEQILEAECKAKGIEVPF
EEEECCCCHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCCCCH
NEFLNLATIYRIRSRKKNERMGQRRAMEELNIEWEGRQHSGYVDAYNLAQLALKIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA