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The map label for this gene is yfeR [C]

Identifier: 59712067

GI number: 59712067

Start: 1615926

End: 1616771

Strand: Reverse

Name: yfeR [C]

Synonym: VF_1460

Alternate gene names: 59712067

Gene position: 1616771-1615926 (Counterclockwise)

Preceding gene: 59712068

Following gene: 59712063

Centisome position: 55.8

GC content: 37.83

Gene sequence:

>846_bases
ATGTTACTTGAAGGTATTGAAACACTTTTAGTTTTAAGTAAAGAGAAGACAATGAGTCGTACAGGCAGCGTACTGTACCT
TAGTCAATCTGCGGTGAGTAAGCGTATTACAAAACTAGAAAAGCGTTTAGGGAAAAAATTAATAGAACCTAATGGTCGTT
ATGTCACACTCACGGCGGATGCTAAATCGCTAATTGACAATATCGCTCCAACGTTTAGCGAACTTTGTGGACGCATATAT
GAACAACAAGCTTTAGCGAATGATTCTTTACTTAGAATTGATTGTTCTGAAACGCTTGTGGCGGGGTATTTCAGCCAAGC
GCTATCAACATGTTTTCATGATGACCCAAATTTTACCGTTACAACGAATCACACGCCACGAATTGTTGAAAATGTAAAAT
CAGGAAAAGCGACACTAGGCCTTTGTGCTGGGTATTTACCATCTGGACATGGGTTATTAAGCTTTCATCTTTTCGATGAA
CCATTTTATGTTGTTAGTAACAAACATTTGGATAAGCTACCTAATGAATTGATAACAACGGATCTGACAAACAGTGCGAA
TACTCATCAGTCGGTTATTTTAGAAGCCTTAAAAGTGAACCCTATAATGGAGCTAGATTCATATACCGCAGCAGCCCATT
TAGCATTACAAGGGACTGCTCCGGCACTGATTCCTTTTTCGGTAATAAAAGCATTAAATATAGAAGAGCGTTATTTATAT
CAATATAGCGAGCTCAAACCGCTTTTTAGACCCATCTATATATGCACTAGACAAAATAATTATCGATTAGAGCGAGTTCA
GAAAGTCATTACCGCACTTTCTGAGCACGTAAATATTAAGCTATGA

Upstream 100 bases:

>100_bases
AAAGTTCGATAAACAAATCATTCCCCATCAACTTTTTTGCAAGCATCATAAAACATAGATAAACTGAGTTAATTATTCCT
AATTTTCATAAGATAATGCG

Downstream 100 bases:

>100_bases
GGCGTTATTCACATATAGCGATGCAATCGACCTCAATCTTTAATCCAAAGTGCAATTCTCTGGTTGGTACTATGGTTCGC
ACCGGTTTATGATCGATAAA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MLLEGIETLLVLSKEKTMSRTGSVLYLSQSAVSKRITKLEKRLGKKLIEPNGRYVTLTADAKSLIDNIAPTFSELCGRIY
EQQALANDSLLRIDCSETLVAGYFSQALSTCFHDDPNFTVTTNHTPRIVENVKSGKATLGLCAGYLPSGHGLLSFHLFDE
PFYVVSNKHLDKLPNELITTDLTNSANTHQSVILEALKVNPIMELDSYTAAAHLALQGTAPALIPFSVIKALNIEERYLY
QYSELKPLFRPIYICTRQNNYRLERVQKVITALSEHVNIKL

Sequences:

>Translated_281_residues
MLLEGIETLLVLSKEKTMSRTGSVLYLSQSAVSKRITKLEKRLGKKLIEPNGRYVTLTADAKSLIDNIAPTFSELCGRIY
EQQALANDSLLRIDCSETLVAGYFSQALSTCFHDDPNFTVTTNHTPRIVENVKSGKATLGLCAGYLPSGHGLLSFHLFDE
PFYVVSNKHLDKLPNELITTDLTNSANTHQSVILEALKVNPIMELDSYTAAAHLALQGTAPALIPFSVIKALNIEERYLY
QYSELKPLFRPIYICTRQNNYRLERVQKVITALSEHVNIKL
>Mature_281_residues
MLLEGIETLLVLSKEKTMSRTGSVLYLSQSAVSKRITKLEKRLGKKLIEPNGRYVTLTADAKSLIDNIAPTFSELCGRIY
EQQALANDSLLRIDCSETLVAGYFSQALSTCFHDDPNFTVTTNHTPRIVENVKSGKATLGLCAGYLPSGHGLLSFHLFDE
PFYVVSNKHLDKLPNELITTDLTNSANTHQSVILEALKVNPIMELDSYTAAAHLALQGTAPALIPFSVIKALNIEERYLY
QYSELKPLFRPIYICTRQNNYRLERVQKVITALSEHVNIKL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31375; Mature: 31375

Theoretical pI: Translated: 7.91; Mature: 7.91

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLEGIETLLVLSKEKTMSRTGSVLYLSQSAVSKRITKLEKRLGKKLIEPNGRYVTLTAD
CCHHHHHHHHHHHCHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC
AKSLIDNIAPTFSELCGRIYEQQALANDSLLRIDCSETLVAGYFSQALSTCFHDDPNFTV
HHHHHHHHCHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCCCCEEE
TTNHTPRIVENVKSGKATLGLCAGYLPSGHGLLSFHLFDEPFYVVSNKHLDKLPNELITT
ECCCCHHHHHHHHCCCHHHHHHHHCCCCCCCEEEEEEECCCEEEECCCHHHHCCHHHHHH
DLTNSANTHQSVILEALKVNPIMELDSYTAAAHLALQGTAPALIPFSVIKALNIEERYLY
CCCCCCCHHHHHHHHHHHCCCCHHHCCHHHHHEEEECCCCCHHHHHHHHHHCCCHHHHHH
QYSELKPLFRPIYICTRQNNYRLERVQKVITALSEHVNIKL
HHHHHCHHHHEEEEEECCCCCHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MLLEGIETLLVLSKEKTMSRTGSVLYLSQSAVSKRITKLEKRLGKKLIEPNGRYVTLTAD
CCHHHHHHHHHHHCHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC
AKSLIDNIAPTFSELCGRIYEQQALANDSLLRIDCSETLVAGYFSQALSTCFHDDPNFTV
HHHHHHHHCHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCCCCEEE
TTNHTPRIVENVKSGKATLGLCAGYLPSGHGLLSFHLFDEPFYVVSNKHLDKLPNELITT
ECCCCHHHHHHHHCCCHHHHHHHHCCCCCCCEEEEEEECCCEEEECCCHHHHCCHHHHHH
DLTNSANTHQSVILEALKVNPIMELDSYTAAAHLALQGTAPALIPFSVIKALNIEERYLY
CCCCCCCHHHHHHHHHHHCCCCHHHCCHHHHHEEEECCCCCHHHHHHHHHHCCCHHHHHH
QYSELKPLFRPIYICTRQNNYRLERVQKVITALSEHVNIKL
HHHHHCHHHHEEEEEECCCCCHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1741267; 10952301 [H]