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The map label for this gene is yaaJ [C]

Identifier: 59712061

GI number: 59712061

Start: 1608051

End: 1609433

Strand: Direct

Name: yaaJ [C]

Synonym: VF_1454

Alternate gene names: 59712061

Gene position: 1608051-1609433 (Clockwise)

Preceding gene: 59712058

Following gene: 59712062

Centisome position: 55.5

GC content: 41.58

Gene sequence:

>1383_bases
ATGAACACTTTTCACAACACGCTTGTTACTATAGATAACTTCATTTGGGGTCCACCTCTTTTGATTTTATTGGTTGGTAC
GGGTATCTACTTTACGTTTCGTTTACGTATTTTCCAACTTCGCCACTTACCAACTGCGCTTAAAATGGTTTTTTCACGAG
AAGAAAACCAAAGTACGGGCAAGGGTGATGTTTCAAGCTTTGCGGCGTTATGTACTGCCCTATCAGCAACCATTGGTACA
GGTAACATCGTAGGTGTAGCAACAGCCATCAAACTGGGTGGTCCTGGTGCTCTTTTCTGGATGTGGCTTGCTGCTGTATT
TGGAATGGCAACAAAATATGCCGAATGTTTACTTGCGGTTAAATACCGTAAAACAGACAGCAAAGGCGAAATGGTTGGCG
GCCCAATGTACTACCTTGAATATGGCATGGGTAATAAATGGCTAGCAAAACTGTTTGCCCTATTCGCTTTAGGTGTTGCT
TGCTTTGGTATTGGTACATTCCCACAAATTAACGCGATTGTTGACTCAGCACAGCTAACAATGAATGCACCAGCATGGTT
AACAGGCGGTATCCTTACGGTGCTTGTTGCGGTTGTAACACTTGGTGGGATTCAATCTATCGCTAAAGTTGCTGAAAAAG
TCGTTCCAACAATGGCGGTAATTTATGTTGTATCGTGTGCTTCTGTTTTAATAATGCAAGCCGAAGCTTTACCAGCTGCA
TTTCAATTAGTAATTACGTCTGCGTTTACTGGTACTGCTGCAACTGGTGGTTTTGTTGGTGCATCAATCATGCTAGCTAT
TCAATCAGGTGTGGCTCGTGGTGTATTCTCAAATGAATCAGGTCTTGGTAGCGCCCCAATGGCAGCGGCAGCCGCTAAAA
CTGACTCTTGTGTAAAACAAGGCCTTGTATCGATGACAGGTACCTTCTTTGATACCGTGATCATTTGTACCATGACAGGA
TTAACTTTAGTGGTTACTGGTGTATGGCAAGGTGATGCGGCAGGCGCACTAATGACAACCCAAGCATTTGCTATTGGTTT
AGGCTCTGAACAAATTGGTCCTTATCTTGTATCTATCGGTTTAATGTTCTTCGCCTTCACGACAATTTTAGGTTGGAACT
ACTACGGTGAACGTTGTGTGACTTACTTATTTGGTCGCAAAGGTGTTTTACCATACAAAATAATCTTTATTAGCCTAGTG
GCATCTGGTGCTTACATGCATTTAGACACTATTTGGGTTATTGCTGATATTGTTAACGGTTTAATGGCTATTCCAAACCT
AATTGGTCTAATCGCTCTTCGTCATATTATTATTGAAGAAACTCACCTGTTCTTCAGTAAACAGAAAGAGACTGAAAACG
AACAAGTTTTTAATAGAATATAG

Upstream 100 bases:

>100_bases
AGTGATCCGATTAATCTCGGCTCTATACTATTTGTCGATCTTTTGACTTTGGTACACCACTCTCTCTTCTCCTTTCTATA
TGTTTTATTAAGGGGAAACC

Downstream 100 bases:

>100_bases
CGTTCCAATGAATTGTCTCTGTTAATTTTCAGAGATAATTTGAAACATTTATGTAAACCAAATCTCACAAATATATTATT
TATTCTGCTATTATTACCTT

Product: sodium-linked D-alanine glycine permease

Products: Na (I) [Cytoplasm]; L-alanine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 460; Mature: 460

Protein sequence:

>460_residues
MNTFHNTLVTIDNFIWGPPLLILLVGTGIYFTFRLRIFQLRHLPTALKMVFSREENQSTGKGDVSSFAALCTALSATIGT
GNIVGVATAIKLGGPGALFWMWLAAVFGMATKYAECLLAVKYRKTDSKGEMVGGPMYYLEYGMGNKWLAKLFALFALGVA
CFGIGTFPQINAIVDSAQLTMNAPAWLTGGILTVLVAVVTLGGIQSIAKVAEKVVPTMAVIYVVSCASVLIMQAEALPAA
FQLVITSAFTGTAATGGFVGASIMLAIQSGVARGVFSNESGLGSAPMAAAAAKTDSCVKQGLVSMTGTFFDTVIICTMTG
LTLVVTGVWQGDAAGALMTTQAFAIGLGSEQIGPYLVSIGLMFFAFTTILGWNYYGERCVTYLFGRKGVLPYKIIFISLV
ASGAYMHLDTIWVIADIVNGLMAIPNLIGLIALRHIIIEETHLFFSKQKETENEQVFNRI

Sequences:

>Translated_460_residues
MNTFHNTLVTIDNFIWGPPLLILLVGTGIYFTFRLRIFQLRHLPTALKMVFSREENQSTGKGDVSSFAALCTALSATIGT
GNIVGVATAIKLGGPGALFWMWLAAVFGMATKYAECLLAVKYRKTDSKGEMVGGPMYYLEYGMGNKWLAKLFALFALGVA
CFGIGTFPQINAIVDSAQLTMNAPAWLTGGILTVLVAVVTLGGIQSIAKVAEKVVPTMAVIYVVSCASVLIMQAEALPAA
FQLVITSAFTGTAATGGFVGASIMLAIQSGVARGVFSNESGLGSAPMAAAAAKTDSCVKQGLVSMTGTFFDTVIICTMTG
LTLVVTGVWQGDAAGALMTTQAFAIGLGSEQIGPYLVSIGLMFFAFTTILGWNYYGERCVTYLFGRKGVLPYKIIFISLV
ASGAYMHLDTIWVIADIVNGLMAIPNLIGLIALRHIIIEETHLFFSKQKETENEQVFNRI
>Mature_460_residues
MNTFHNTLVTIDNFIWGPPLLILLVGTGIYFTFRLRIFQLRHLPTALKMVFSREENQSTGKGDVSSFAALCTALSATIGT
GNIVGVATAIKLGGPGALFWMWLAAVFGMATKYAECLLAVKYRKTDSKGEMVGGPMYYLEYGMGNKWLAKLFALFALGVA
CFGIGTFPQINAIVDSAQLTMNAPAWLTGGILTVLVAVVTLGGIQSIAKVAEKVVPTMAVIYVVSCASVLIMQAEALPAA
FQLVITSAFTGTAATGGFVGASIMLAIQSGVARGVFSNESGLGSAPMAAAAAKTDSCVKQGLVSMTGTFFDTVIICTMTG
LTLVVTGVWQGDAAGALMTTQAFAIGLGSEQIGPYLVSIGLMFFAFTTILGWNYYGERCVTYLFGRKGVLPYKIIFISLV
ASGAYMHLDTIWVIADIVNGLMAIPNLIGLIALRHIIIEETHLFFSKQKETENEQVFNRI

Specific function: Unknown

COG id: COG1115

COG function: function code E; Na+/alanine symporter

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:alanine (SAF) symporter family [H]

Homologues:

Organism=Escherichia coli, GI1786188, Length=461, Percent_Identity=33.8394793926247, Blast_Score=234, Evalue=7e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001463 [H]

Pfam domain/function: PF01235 Na_Ala_symp [H]

EC number: NA

Molecular weight: Translated: 48993; Mature: 48993

Theoretical pI: Translated: 8.26; Mature: 8.26

Prosite motif: PS00873 NA_ALANINE_SYMP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTFHNTLVTIDNFIWGPPLLILLVGTGIYFTFRLRIFQLRHLPTALKMVFSREENQSTG
CCCHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
KGDVSSFAALCTALSATIGTGNIVGVATAIKLGGPGALFWMWLAAVFGMATKYAECLLAV
CCHHHHHHHHHHHHHHHCCCCCEEEHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
KYRKTDSKGEMVGGPMYYLEYGMGNKWLAKLFALFALGVACFGIGTFPQINAIVDSAQLT
HHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCHHEE
MNAPAWLTGGILTVLVAVVTLGGIQSIAKVAEKVVPTMAVIYVVSCASVLIMQAEALPAA
ECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FQLVITSAFTGTAATGGFVGASIMLAIQSGVARGVFSNESGLGSAPMAAAAAKTDSCVKQ
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
GLVSMTGTFFDTVIICTMTGLTLVVTGVWQGDAAGALMTTQAFAIGLGSEQIGPYLVSIG
HHHHHHHHHHHHHHHHHHHCHHHEEEECCCCCCCCHHHHHHHHHEECCCHHHHHHHHHHH
LMFFAFTTILGWNYYGERCVTYLFGRKGVLPYKIIFISLVASGAYMHLDTIWVIADIVNG
HHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEHHHHHHHHHHHHHH
LMAIPNLIGLIALRHIIIEETHLFFSKQKETENEQVFNRI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC
>Mature Secondary Structure
MNTFHNTLVTIDNFIWGPPLLILLVGTGIYFTFRLRIFQLRHLPTALKMVFSREENQSTG
CCCHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
KGDVSSFAALCTALSATIGTGNIVGVATAIKLGGPGALFWMWLAAVFGMATKYAECLLAV
CCHHHHHHHHHHHHHHHCCCCCEEEHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
KYRKTDSKGEMVGGPMYYLEYGMGNKWLAKLFALFALGVACFGIGTFPQINAIVDSAQLT
HHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCHHEE
MNAPAWLTGGILTVLVAVVTLGGIQSIAKVAEKVVPTMAVIYVVSCASVLIMQAEALPAA
ECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FQLVITSAFTGTAATGGFVGASIMLAIQSGVARGVFSNESGLGSAPMAAAAAKTDSCVKQ
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
GLVSMTGTFFDTVIICTMTGLTLVVTGVWQGDAAGALMTTQAFAIGLGSEQIGPYLVSIG
HHHHHHHHHHHHHHHHHHHCHHHEEEECCCCCCCCHHHHHHHHHEECCCHHHHHHHHHHH
LMFFAFTTILGWNYYGERCVTYLFGRKGVLPYKIIFISLVASGAYMHLDTIWVIADIVNG
HHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEHHHHHHHHHHHHHH
LMAIPNLIGLIALRHIIIEETHLFFSKQKETENEQVFNRI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Na (I) [Periplasm]; L-alanine [Periplasm] [C]

Specific reaction: Na (I) [Periplasm] + L-alanine [Periplasm] = Na (I) [Cytoplasm] + L-alanine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]