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The map label for this gene is exbD1 [H]

Identifier: 59711830

GI number: 59711830

Start: 1357176

End: 1357595

Strand: Reverse

Name: exbD1 [H]

Synonym: VF_1223

Alternate gene names: 59711830

Gene position: 1357595-1357176 (Counterclockwise)

Preceding gene: 59711831

Following gene: 59711829

Centisome position: 46.85

GC content: 35.48

Gene sequence:

>420_bases
ATGATTAAGTCACCTTCTTTCACTTCTGAAGAGTCCATTCAGCCTGATCTGACCCCTTTACTCGATATTATTTTCATCGT
AATGGTTTTTTTATTACTCACCGCTACCGTGAAACTTCAATCTTTAGAAGTGAGCTTACCGACAGCGGATACCGAATCGG
TAAGTGACGTAGACAGTAAGTCTTTTACCATCAATATATTAGAACAACCGCCATATTGGGGTTTGGATGGTCATTCTTAT
TCTACTTGGCCTTCTTTTACTAACGCATTACTACAAAAAGTAAAAAGTAAACCTGATTTTCAAGTGGTTATTGCCTCAGA
TAAAACCGCTGAAATTCAGCATATGGTGAAATTATTGGCCTTTTTACAAGATAACAATATTAAAGCAACTCAAATTTTAA
TGGACGAAAATAAATCATGA

Upstream 100 bases:

>100_bases
AGCATTCATTAAATTACACTAATTTGTGGATTGAAGGTGTATTTAGCTCAAATGATTCAATGAGTGAGAACATCCAACAT
AAAATCATCAAGGTGAATGC

Downstream 100 bases:

>100_bases
TTAATTCTAAACTTACCTCCTCTTTCTTTGCTATAGCATTGCTTTCATTCTCATCCATTAGTACAGCACAAGAGCGTATT
ATTAGTGCTGGAAGTGCCGT

Product: TonB system transport protein ExbD1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MIKSPSFTSEESIQPDLTPLLDIIFIVMVFLLLTATVKLQSLEVSLPTADTESVSDVDSKSFTINILEQPPYWGLDGHSY
STWPSFTNALLQKVKSKPDFQVVIASDKTAEIQHMVKLLAFLQDNNIKATQILMDENKS

Sequences:

>Translated_139_residues
MIKSPSFTSEESIQPDLTPLLDIIFIVMVFLLLTATVKLQSLEVSLPTADTESVSDVDSKSFTINILEQPPYWGLDGHSY
STWPSFTNALLQKVKSKPDFQVVIASDKTAEIQHMVKLLAFLQDNNIKATQILMDENKS
>Mature_139_residues
MIKSPSFTSEESIQPDLTPLLDIIFIVMVFLLLTATVKLQSLEVSLPTADTESVSDVDSKSFTINILEQPPYWGLDGHSY
STWPSFTNALLQKVKSKPDFQVVIASDKTAEIQHMVKLLAFLQDNNIKATQILMDENKS

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15532; Mature: 15532

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKSPSFTSEESIQPDLTPLLDIIFIVMVFLLLTATVKLQSLEVSLPTADTESVSDVDSK
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCC
SFTINILEQPPYWGLDGHSYSTWPSFTNALLQKVKSKPDFQVVIASDKTAEIQHMVKLLA
CEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHH
FLQDNNIKATQILMDENKS
HHHCCCCEEEEEEECCCCC
>Mature Secondary Structure
MIKSPSFTSEESIQPDLTPLLDIIFIVMVFLLLTATVKLQSLEVSLPTADTESVSDVDSK
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCC
SFTINILEQPPYWGLDGHSYSTWPSFTNALLQKVKSKPDFQVVIASDKTAEIQHMVKLLA
CEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHH
FLQDNNIKATQILMDENKS
HHHCCCCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9781885; 10952301 [H]