Click here to switch to the map view.

The map label for this gene is 59711742

Identifier: 59711742

GI number: 59711742

Start: 1257769

End: 1259166

Strand: Direct

Name: 59711742

Synonym: VF_1135

Alternate gene names: NA

Gene position: 1257769-1259166 (Clockwise)

Preceding gene: 59711741

Following gene: 59711743

Centisome position: 43.41

GC content: 37.48

Gene sequence:

>1398_bases
ATGAATTCAATATTGAAGAAATCCACCATAGTTACTTTTGCTTTGCTGCTTTCTGGCTGTGCAAATATGTCTGTTGGCAA
TTTGTTTAGTCATTATTCAGCTCAAACTAATGATGTTTATCAATTAGTGAAAAGTGGTGAAGCAAAACAAGCTTATACTC
TTGAAGAGCAGGAAGTGGGTGGCCCAATTCTTGATAATATGGAGCTTGGTCGTATTGCTTTATTAAGCGAGCAATATGCG
GAGAGTAAAACGGATTTTGAAGTAGCAGAGCAAGCTGTGAGAGTGCAAAGTGACCAAGCGACTATCTCTGTTTCTGATTC
AGCAAATCAAGTGGGTTCTTTAGTCACGAATGATAATTTAATTGACTATAAACCAGCGGATTATGAGTTAGGTTACTTGC
ATTTATATTTGTCTTTAAATTATTTAAAAAATAATGATTTAGAAGGTGCTTTGGTTGAGGTTCGTAAAGCGAACTATATT
CAAGAGCAAGCGAAAAGAGACAGAGAAAAGGATTTACAAAAAGCGGAAAAAGAAGCAAGAAAAGAGGGCGTTAAAACCAA
CGTAGGGGCTATTTTAGCTAATTATCCTGATGTGGGTAATCAACTTGCTGCGGTTCAAAATGGCTATCTTTTCTATTATT
CAGGCCTGCTTTATGAAACCAATCGTTCTTTAAATGATGCTTATATAGATTATAAACGAGCGTTAGCAGTAGCGCCGAAT
AATAAAACGGTGATTGAATCGGTTCAACGTGTTGCTCGTAAACTGGGTATGCGTAACGATATCAAAATGTTAGAGAAGCA
ATACGGTGCTTACCAAGTACCAAAACGCTCTGATAGCCGTGTGATTATTATTGATGAACAAGGTATTTTACCGCCATTGT
CTGATTGGCGATTGGGCTTACCTATGTGGGATAGCCAAGGTAATTTTGTTCAATATAATTTAGCATTACCTTACTATAAA
AACACCAAACGTCAGGTATTTCCGCCACTAAAAGTGAATGGTAAGTCGTTAGCGAGTGATCAAGTTGCTGATGTAACATT
AATGGCGAAGAACGATCTTAATGAACGCATTCCTGCAATGGTGATCCGCCAAGCTTTACGTGTTGTTGCTAAAGATGAAT
TAAGAAAAACATCAAGAAACAGCAAAGAAGAAGAGTTGGTTAATGCGGTCTTTACTATCTTTAATACATTAACAGAACAA
CCTGATACACGTAGCTGGCAAACACTACCAGCGCAAATAAGTGTAACAAGTATGAGTATTGAGCCCGGAAAGAATCAAAT
TCAATATCAAGGAAATGAACTAGACTTTACAGTAAAGGAAGGACATACCGTTATCGTCTGGTCATCTAGACAAGGAAACG
CCGTCACTTGGTGGCATAAACAATTAGGGGAAATATAA

Upstream 100 bases:

>100_bases
GGTCGCCCTTTAGGTCCAATGCTACTAAGCTAATAAATATCATATAGAGGCTCCTGTTTTTGTGGAGCCTTACTTTTCCA
ACGATGAGTTTCTTATAATA

Downstream 100 bases:

>100_bases
TGAAAAAATGGTTTATCGCACTTTTGTTACCACTGGCTTTGGCTGCGTGTAGTTCAAGTCAAACAGCAGGGATCAGTGTT
GATAGCAGCACTCAAAAAGT

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: Lipoprotein; TPR Domain-Containing Protein; Tetratricopeptide TPR_2 Repeat Protein; Adenine DNA Methylase; Tetratricopeptide Repeat-Containing Protein; Tetratricopeptide Repeat Domain Protein

Number of amino acids: Translated: 465; Mature: 465

Protein sequence:

>465_residues
MNSILKKSTIVTFALLLSGCANMSVGNLFSHYSAQTNDVYQLVKSGEAKQAYTLEEQEVGGPILDNMELGRIALLSEQYA
ESKTDFEVAEQAVRVQSDQATISVSDSANQVGSLVTNDNLIDYKPADYELGYLHLYLSLNYLKNNDLEGALVEVRKANYI
QEQAKRDREKDLQKAEKEARKEGVKTNVGAILANYPDVGNQLAAVQNGYLFYYSGLLYETNRSLNDAYIDYKRALAVAPN
NKTVIESVQRVARKLGMRNDIKMLEKQYGAYQVPKRSDSRVIIIDEQGILPPLSDWRLGLPMWDSQGNFVQYNLALPYYK
NTKRQVFPPLKVNGKSLASDQVADVTLMAKNDLNERIPAMVIRQALRVVAKDELRKTSRNSKEEELVNAVFTIFNTLTEQ
PDTRSWQTLPAQISVTSMSIEPGKNQIQYQGNELDFTVKEGHTVIVWSSRQGNAVTWWHKQLGEI

Sequences:

>Translated_465_residues
MNSILKKSTIVTFALLLSGCANMSVGNLFSHYSAQTNDVYQLVKSGEAKQAYTLEEQEVGGPILDNMELGRIALLSEQYA
ESKTDFEVAEQAVRVQSDQATISVSDSANQVGSLVTNDNLIDYKPADYELGYLHLYLSLNYLKNNDLEGALVEVRKANYI
QEQAKRDREKDLQKAEKEARKEGVKTNVGAILANYPDVGNQLAAVQNGYLFYYSGLLYETNRSLNDAYIDYKRALAVAPN
NKTVIESVQRVARKLGMRNDIKMLEKQYGAYQVPKRSDSRVIIIDEQGILPPLSDWRLGLPMWDSQGNFVQYNLALPYYK
NTKRQVFPPLKVNGKSLASDQVADVTLMAKNDLNERIPAMVIRQALRVVAKDELRKTSRNSKEEELVNAVFTIFNTLTEQ
PDTRSWQTLPAQISVTSMSIEPGKNQIQYQGNELDFTVKEGHTVIVWSSRQGNAVTWWHKQLGEI
>Mature_465_residues
MNSILKKSTIVTFALLLSGCANMSVGNLFSHYSAQTNDVYQLVKSGEAKQAYTLEEQEVGGPILDNMELGRIALLSEQYA
ESKTDFEVAEQAVRVQSDQATISVSDSANQVGSLVTNDNLIDYKPADYELGYLHLYLSLNYLKNNDLEGALVEVRKANYI
QEQAKRDREKDLQKAEKEARKEGVKTNVGAILANYPDVGNQLAAVQNGYLFYYSGLLYETNRSLNDAYIDYKRALAVAPN
NKTVIESVQRVARKLGMRNDIKMLEKQYGAYQVPKRSDSRVIIIDEQGILPPLSDWRLGLPMWDSQGNFVQYNLALPYYK
NTKRQVFPPLKVNGKSLASDQVADVTLMAKNDLNERIPAMVIRQALRVVAKDELRKTSRNSKEEELVNAVFTIFNTLTEQ
PDTRSWQTLPAQISVTSMSIEPGKNQIQYQGNELDFTVKEGHTVIVWSSRQGNAVTWWHKQLGEI

Specific function: Unknown

COG id: COG3014

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 52398; Mature: 52398

Theoretical pI: Translated: 6.21; Mature: 6.21

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSILKKSTIVTFALLLSGCANMSVGNLFSHYSAQTNDVYQLVKSGEAKQAYTLEEQEVG
CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHCCCCCCEEECCHHHCC
GPILDNMELGRIALLSEQYAESKTDFEVAEQAVRVQSDQATISVSDSANQVGSLVTNDNL
CCCCCCCCCCCEEEHHHHHHCCCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHEECCCE
IDYKPADYELGYLHLYLSLNYLKNNDLEGALVEVRKANYIQEQAKRDREKDLQKAEKEAR
EECCCCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KEGVKTNVGAILANYPDVGNQLAAVQNGYLFYYSGLLYETNRSLNDAYIDYKRALAVAPN
HCCCCCCCCEEEECCCCCCCHHHHHHCCEEEEEECEEEECCCCCCHHHHHHHHEEEECCC
NKTVIESVQRVARKLGMRNDIKMLEKQYGAYQVPKRSDSRVIIIDEQGILPPLSDWRLGL
CHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEECCCCCCCEEEEEECCCCCCCCCCCCCCC
PMWDSQGNFVQYNLALPYYKNTKRQVFPPLKVNGKSLASDQVADVTLMAKNDLNERIPAM
CEECCCCCEEEEEEECCCCCCCCCCCCCCCEECCCCCCCCCHHEEEEEECCCCHHHHHHH
VIRQALRVVAKDELRKTSRNSKEEELVNAVFTIFNTLTEQPDTRSWQTLPAQISVTSMSI
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEE
EPGKNQIQYQGNELDFTVKEGHTVIVWSSRQGNAVTWWHKQLGEI
CCCCCCEEEECCEEEEEEECCCEEEEEECCCCCEEEHHHHHHCCC
>Mature Secondary Structure
MNSILKKSTIVTFALLLSGCANMSVGNLFSHYSAQTNDVYQLVKSGEAKQAYTLEEQEVG
CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHCCCCCCEEECCHHHCC
GPILDNMELGRIALLSEQYAESKTDFEVAEQAVRVQSDQATISVSDSANQVGSLVTNDNL
CCCCCCCCCCCEEEHHHHHHCCCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHEECCCE
IDYKPADYELGYLHLYLSLNYLKNNDLEGALVEVRKANYIQEQAKRDREKDLQKAEKEAR
EECCCCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KEGVKTNVGAILANYPDVGNQLAAVQNGYLFYYSGLLYETNRSLNDAYIDYKRALAVAPN
HCCCCCCCCEEEECCCCCCCHHHHHHCCEEEEEECEEEECCCCCCHHHHHHHHEEEECCC
NKTVIESVQRVARKLGMRNDIKMLEKQYGAYQVPKRSDSRVIIIDEQGILPPLSDWRLGL
CHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEECCCCCCCEEEEEECCCCCCCCCCCCCCC
PMWDSQGNFVQYNLALPYYKNTKRQVFPPLKVNGKSLASDQVADVTLMAKNDLNERIPAM
CEECCCCCEEEEEEECCCCCCCCCCCCCCCEECCCCCCCCCHHEEEEEECCCCHHHHHHH
VIRQALRVVAKDELRKTSRNSKEEELVNAVFTIFNTLTEQPDTRSWQTLPAQISVTSMSI
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEE
EPGKNQIQYQGNELDFTVKEGHTVIVWSSRQGNAVTWWHKQLGEI
CCCCCCEEEECCEEEEEEECCCEEEEEECCCCCEEEHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA