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The map label for this gene is 59711737

Identifier: 59711737

GI number: 59711737

Start: 1252397

End: 1252855

Strand: Reverse

Name: 59711737

Synonym: VF_1130

Alternate gene names: NA

Gene position: 1252855-1252397 (Counterclockwise)

Preceding gene: 59711740

Following gene: 59711736

Centisome position: 43.24

GC content: 43.36

Gene sequence:

>459_bases
ATGACTAAAGGCTATTCTTGTATTGGTTTAGTAAACCCAAAAACACCTGAAAACGTAGGCTCTGTAATGCGCGCTGCGGG
TTGCTATGGCGTAAACTCTGTATTCTACACAGGAAAGCGTTATGACATTGCTAAGCAGTTTTGTACGGATACAAAAAGTC
AGCATTTAAACCTACCGTTAATCGGAGTTGAAGATCTAAGAGACATCGTTCCTCTAGATTGTGTGCCTGTGGCCGTTGAT
TTAATTGAAGGCGCAAAACCACTGCCAGATTACAAACACCCACCACGTGCGTTTTACATTTTTGGCCCTGAAGATGGTAC
GCTGAAAAAAGAGATCACCGATTTCTGCCGTGAAACGATTTACGTACCTACCAATGGGTGTATGAACCTTGCGGCTGCGG
TAAACGTGATCATGTACGATCGCATGGCAAAAGGCGACAACTTCTCAAACCATAAATAA

Upstream 100 bases:

>100_bases
TTTCATAATCATTCTCTTAGGAAATTCTCTAATGAGTCTATATGAATGACATCAATTTAGGTATACTTCGCGCAAATTTT
GTAAGAGAAAGACGGTAAAA

Downstream 100 bases:

>100_bases
TCTAAATTAAACTGGATGAATAAAGGAACTCGACATGTTTGATTTATCACGTATTTCGGGTTTCGAAAACGCATCAATTA
CTCAAACTGATACGCTACAA

Product: 23S rRNA methyltransferase

Products: NA

Alternate protein names: RNA Methyltransferase; 23S RRNA Methyltransferase; RNA Methyltransferase TrmH Family; Cold-Shock RNA Methyltransferase; rRNA Methylase; TrmH Family RNA Methyltransferase; TRNA/RRNA MethyltransferaU; rRNA Methyltransferase; SpoU RRNA Methylase Family Protein; SpoU Class RRNA Methylase

Number of amino acids: Translated: 152; Mature: 151

Protein sequence:

>152_residues
MTKGYSCIGLVNPKTPENVGSVMRAAGCYGVNSVFYTGKRYDIAKQFCTDTKSQHLNLPLIGVEDLRDIVPLDCVPVAVD
LIEGAKPLPDYKHPPRAFYIFGPEDGTLKKEITDFCRETIYVPTNGCMNLAAAVNVIMYDRMAKGDNFSNHK

Sequences:

>Translated_152_residues
MTKGYSCIGLVNPKTPENVGSVMRAAGCYGVNSVFYTGKRYDIAKQFCTDTKSQHLNLPLIGVEDLRDIVPLDCVPVAVD
LIEGAKPLPDYKHPPRAFYIFGPEDGTLKKEITDFCRETIYVPTNGCMNLAAAVNVIMYDRMAKGDNFSNHK
>Mature_151_residues
TKGYSCIGLVNPKTPENVGSVMRAAGCYGVNSVFYTGKRYDIAKQFCTDTKSQHLNLPLIGVEDLRDIVPLDCVPVAVDL
IEGAKPLPDYKHPPRAFYIFGPEDGTLKKEITDFCRETIYVPTNGCMNLAAAVNVIMYDRMAKGDNFSNHK

Specific function: Unknown

COG id: COG0219

COG function: function code J; Predicted rRNA methylase (SpoU class)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16812; Mature: 16680

Theoretical pI: Translated: 7.30; Mature: 7.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
7.2 %Cys+Met (Translated Protein)
4.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKGYSCIGLVNPKTPENVGSVMRAAGCYGVNSVFYTGKRYDIAKQFCTDTKSQHLNLPL
CCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHCCCCCCCCCCCE
IGVEDLRDIVPLDCVPVAVDLIEGAKPLPDYKHPPRAFYIFGPEDGTLKKEITDFCRETI
ECHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHEE
YVPTNGCMNLAAAVNVIMYDRMAKGDNFSNHK
ECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TKGYSCIGLVNPKTPENVGSVMRAAGCYGVNSVFYTGKRYDIAKQFCTDTKSQHLNLPL
CCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHCCCCCCCCCCCE
IGVEDLRDIVPLDCVPVAVDLIEGAKPLPDYKHPPRAFYIFGPEDGTLKKEITDFCRETI
ECHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHEE
YVPTNGCMNLAAAVNVIMYDRMAKGDNFSNHK
ECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA