| Definition | Vibrio fischeri ES114 chromosome I, complete genome. |
|---|---|
| Accession | NC_006840 |
| Length | 2,897,536 |
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The map label for this gene is dnaJ [H]
Identifier: 59711715
GI number: 59711715
Start: 1221152
End: 1222057
Strand: Direct
Name: dnaJ [H]
Synonym: VF_1108
Alternate gene names: 59711715
Gene position: 1221152-1222057 (Clockwise)
Preceding gene: 59711714
Following gene: 59711716
Centisome position: 42.14
GC content: 40.62
Gene sequence:
>906_bases ATGTCTAAACGTGATTATTATGAAGTCCTTGGTGTTTCTAAAAGCAGCACAGAAAAAGAGATTAAAAAAGCATATAAACG TCTTGCGATGAAATACCACCCAGATAAAAATCAAGGTGATGCACAAGCCGCTGATAAGTTTAAAGAAATTAAAGAAGCAT ACGAAGTATTAACTGATCCAGATAAGCGTGGTCAGTATGATGACTTTGGTCATGCAGCATTCCAAAATGGCGGTAACGGC GGCTTCGGTGGTGGTTTTGGAGGCGGCCATAGCCAAGGTTTTGGTGGATTTGAAGATATTTTTGGTAGTGCCTTTGGTGG TCGTTCGCGTGGCGGTTTTGGTAGTGGTGGATTTGAGGATATGTTCTCTCAACATCGTCAACCACGAGCACAAAAAGGAC AAGATCGTCAGTTTAACCTGACTGTTGATTTTGCTGATGCAATTAAAGGTTGTGAGCAAATCATTGAGCTGCCAGTGAAT GGCGTAAATAAAAAGATCAATGTAAAAGTACCAGCAGGTATTGAAGACGGTGAAAAGATCCGTTTTGCGGGTAAAGGTGA ATCAGGTATTAACGGTGGCCCAGCTGGGGATCTACTGATCCAAATTAATACTCGACCACACGCAACATTAAAACGTGATG GAAATGATTTAATTTGTCCTGTGACAACGGATTTTGTTACTGCAGCTTTAGGTGGTGAAGTTGAAATTCAGACTTTAGAG AGTCGTTTTAAACTAAAAGTACCAGCAGGAACACAAAACGGTCGTAAATTCCGCATGAAAGAAAAAGGTGTGAAAAGCCG TAAAGGTGTAACGGGCGACTTATTGGTTGAAATTACCGTAGCAACACCAACAAATTTAACCGAAGAGCAGAAAACATTGC TCATGAAGTTTAAAGAAATCGCATAA
Upstream 100 bases:
>100_bases TAAATCTGATAGTACATAAACTCCAATGATTAGTTTTTATTAAAGAAAGACGTAAGAGTTTGTTCTTACGCCTGATTCTA TTCATTGACGAGGTTAAGTC
Downstream 100 bases:
>100_bases CTAGCGGAAATATTTAACGAGAAAGGAGGCGTGAATATATGATGAGAAAAATCGGATTATTCATGCCTTTTTTGTTGTTT GTTAGTTATGAAATACAAGC
Product: chaperone protein DnaJ-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 301; Mature: 300
Protein sequence:
>301_residues MSKRDYYEVLGVSKSSTEKEIKKAYKRLAMKYHPDKNQGDAQAADKFKEIKEAYEVLTDPDKRGQYDDFGHAAFQNGGNG GFGGGFGGGHSQGFGGFEDIFGSAFGGRSRGGFGSGGFEDMFSQHRQPRAQKGQDRQFNLTVDFADAIKGCEQIIELPVN GVNKKINVKVPAGIEDGEKIRFAGKGESGINGGPAGDLLIQINTRPHATLKRDGNDLICPVTTDFVTAALGGEVEIQTLE SRFKLKVPAGTQNGRKFRMKEKGVKSRKGVTGDLLVEITVATPTNLTEEQKTLLMKFKEIA
Sequences:
>Translated_301_residues MSKRDYYEVLGVSKSSTEKEIKKAYKRLAMKYHPDKNQGDAQAADKFKEIKEAYEVLTDPDKRGQYDDFGHAAFQNGGNG GFGGGFGGGHSQGFGGFEDIFGSAFGGRSRGGFGSGGFEDMFSQHRQPRAQKGQDRQFNLTVDFADAIKGCEQIIELPVN GVNKKINVKVPAGIEDGEKIRFAGKGESGINGGPAGDLLIQINTRPHATLKRDGNDLICPVTTDFVTAALGGEVEIQTLE SRFKLKVPAGTQNGRKFRMKEKGVKSRKGVTGDLLVEITVATPTNLTEEQKTLLMKFKEIA >Mature_300_residues SKRDYYEVLGVSKSSTEKEIKKAYKRLAMKYHPDKNQGDAQAADKFKEIKEAYEVLTDPDKRGQYDDFGHAAFQNGGNGG FGGGFGGGHSQGFGGFEDIFGSAFGGRSRGGFGSGGFEDMFSQHRQPRAQKGQDRQFNLTVDFADAIKGCEQIIELPVNG VNKKINVKVPAGIEDGEKIRFAGKGESGINGGPAGDLLIQINTRPHATLKRDGNDLICPVTTDFVTAALGGEVEIQTLES RFKLKVPAGTQNGRKFRMKEKGVKSRKGVTGDLLVEITVATPTNLTEEQKTLLMKFKEIA
Specific function: Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion. Unfolded proteins bind initially to dnaJ; upon
COG id: COG0484
COG function: function code O; DnaJ-class molecular chaperone with C-terminal Zn finger domain
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 J domain [H]
Homologues:
Organism=Homo sapiens, GI205360838, Length=359, Percent_Identity=29.5264623955432, Blast_Score=149, Evalue=3e-36, Organism=Homo sapiens, GI205360840, Length=359, Percent_Identity=29.5264623955432, Blast_Score=149, Evalue=3e-36, Organism=Homo sapiens, GI201862587, Length=348, Percent_Identity=29.3103448275862, Blast_Score=130, Evalue=2e-30, Organism=Homo sapiens, GI56549115, Length=348, Percent_Identity=29.3103448275862, Blast_Score=129, Evalue=3e-30, Organism=Homo sapiens, GI201862518, Length=348, Percent_Identity=29.3103448275862, Blast_Score=129, Evalue=3e-30, Organism=Homo sapiens, GI6631085, Length=337, Percent_Identity=28.7833827893175, Blast_Score=127, Evalue=2e-29, Organism=Homo sapiens, GI5453690, Length=336, Percent_Identity=30.3571428571429, Blast_Score=126, Evalue=3e-29, Organism=Homo sapiens, GI39204547, Length=311, Percent_Identity=30.8681672025724, Blast_Score=120, Evalue=1e-27, Organism=Homo sapiens, GI7706495, Length=315, Percent_Identity=28.2539682539683, Blast_Score=119, Evalue=4e-27, Organism=Homo sapiens, GI9558755, Length=143, Percent_Identity=44.0559440559441, Blast_Score=101, Evalue=1e-21, Organism=Homo sapiens, GI194306642, Length=140, Percent_Identity=42.1428571428571, Blast_Score=96, Evalue=4e-20, Organism=Homo sapiens, GI194306640, Length=140, Percent_Identity=42.1428571428571, Blast_Score=96, Evalue=4e-20, Organism=Homo sapiens, GI72534740, Length=138, Percent_Identity=41.304347826087, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI23503241, Length=106, Percent_Identity=45.2830188679245, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI47777312, Length=112, Percent_Identity=43.75, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI68077166, Length=109, Percent_Identity=39.4495412844037, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI68077168, Length=109, Percent_Identity=39.4495412844037, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI45504382, Length=64, Percent_Identity=56.25, Blast_Score=82, Evalue=6e-16, Organism=Homo sapiens, GI22749377, Length=67, Percent_Identity=53.7313432835821, Blast_Score=81, Evalue=9e-16, Organism=Homo sapiens, GI27151736, Length=105, Percent_Identity=42.8571428571429, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI17388799, Length=107, Percent_Identity=44.8598130841121, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI88501736, Length=105, Percent_Identity=42.8571428571429, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI21553335, Length=119, Percent_Identity=42.8571428571429, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI194328758, Length=162, Percent_Identity=37.6543209876543, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI194328760, Length=160, Percent_Identity=38.125, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI4885495, Length=107, Percent_Identity=44.8598130841121, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI24308127, Length=98, Percent_Identity=37.7551020408163, Blast_Score=78, Evalue=8e-15, Organism=Homo sapiens, GI29126218, Length=64, Percent_Identity=53.125, Blast_Score=78, Evalue=1e-14, Organism=Homo sapiens, GI4504511, Length=70, Percent_Identity=52.8571428571429, Blast_Score=78, Evalue=1e-14, Organism=Homo sapiens, GI56687498, Length=68, Percent_Identity=52.9411764705882, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI5031741, Length=69, Percent_Identity=52.1739130434783, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI217035105, Length=73, Percent_Identity=42.4657534246575, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI5453980, Length=102, Percent_Identity=39.2156862745098, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI8922563, Length=71, Percent_Identity=42.2535211267606, Blast_Score=65, Evalue=8e-11, Organism=Escherichia coli, GI1786197, Length=351, Percent_Identity=44.1595441595442, Blast_Score=251, Evalue=6e-68, Organism=Escherichia coli, GI1787235, Length=312, Percent_Identity=35.5769230769231, Blast_Score=178, Evalue=4e-46, Organism=Caenorhabditis elegans, GI17534355, Length=329, Percent_Identity=33.1306990881459, Blast_Score=137, Evalue=5e-33, Organism=Caenorhabditis elegans, GI212645553, Length=331, Percent_Identity=31.1178247734139, Blast_Score=119, Evalue=2e-27, Organism=Caenorhabditis elegans, GI17554644, Length=106, Percent_Identity=43.3962264150943, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI115532378, Length=95, Percent_Identity=42.1052631578947, Blast_Score=86, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17538236, Length=113, Percent_Identity=38.9380530973451, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI17553096, Length=67, Percent_Identity=59.7014925373134, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17553098, Length=67, Percent_Identity=59.7014925373134, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI115532476, Length=68, Percent_Identity=54.4117647058823, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17568643, Length=70, Percent_Identity=50, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI86563276, Length=121, Percent_Identity=39.6694214876033, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17507263, Length=62, Percent_Identity=51.6129032258064, Blast_Score=72, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17554900, Length=67, Percent_Identity=44.7761194029851, Blast_Score=66, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6324321, Length=341, Percent_Identity=29.0322580645161, Blast_Score=106, Evalue=4e-24, Organism=Saccharomyces cerevisiae, GI6323870, Length=73, Percent_Identity=54.7945205479452, Blast_Score=88, Evalue=1e-18, Organism=Saccharomyces cerevisiae, GI6324265, Length=65, Percent_Identity=56.9230769230769, Blast_Score=83, Evalue=6e-17, Organism=Saccharomyces cerevisiae, GI6323813, Length=115, Percent_Identity=44.3478260869565, Blast_Score=80, Evalue=4e-16, Organism=Saccharomyces cerevisiae, GI6322388, Length=109, Percent_Identity=44.0366972477064, Blast_Score=80, Evalue=4e-16, Organism=Saccharomyces cerevisiae, GI6323119, Length=82, Percent_Identity=48.780487804878, Blast_Score=78, Evalue=2e-15, Organism=Saccharomyces cerevisiae, GI6320888, Length=103, Percent_Identity=43.6893203883495, Blast_Score=78, Evalue=2e-15, Organism=Saccharomyces cerevisiae, GI6322194, Length=103, Percent_Identity=42.7184466019417, Blast_Score=76, Evalue=6e-15, Organism=Saccharomyces cerevisiae, GI6324103, Length=63, Percent_Identity=50.7936507936508, Blast_Score=71, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6324252, Length=64, Percent_Identity=46.875, Blast_Score=69, Evalue=1e-12, Organism=Drosophila melanogaster, GI85726398, Length=348, Percent_Identity=32.7586206896552, Blast_Score=134, Evalue=6e-32, Organism=Drosophila melanogaster, GI24658562, Length=331, Percent_Identity=30.5135951661631, Blast_Score=126, Evalue=2e-29, Organism=Drosophila melanogaster, GI24658555, Length=331, Percent_Identity=30.5135951661631, Blast_Score=126, Evalue=2e-29, Organism=Drosophila melanogaster, GI19920464, Length=325, Percent_Identity=29.8461538461538, Blast_Score=122, Evalue=2e-28, Organism=Drosophila melanogaster, GI18858081, Length=349, Percent_Identity=26.9340974212034, Blast_Score=100, Evalue=1e-21, Organism=Drosophila melanogaster, GI45552813, Length=70, Percent_Identity=55.7142857142857, Blast_Score=85, Evalue=6e-17, Organism=Drosophila melanogaster, GI45549272, Length=70, Percent_Identity=55.7142857142857, Blast_Score=85, Evalue=7e-17, Organism=Drosophila melanogaster, GI24646562, Length=73, Percent_Identity=54.7945205479452, Blast_Score=85, Evalue=7e-17, Organism=Drosophila melanogaster, GI24646560, Length=73, Percent_Identity=54.7945205479452, Blast_Score=85, Evalue=7e-17, Organism=Drosophila melanogaster, GI24646558, Length=73, Percent_Identity=54.7945205479452, Blast_Score=85, Evalue=7e-17, Organism=Drosophila melanogaster, GI24646556, Length=73, Percent_Identity=54.7945205479452, Blast_Score=85, Evalue=7e-17, Organism=Drosophila melanogaster, GI21357547, Length=73, Percent_Identity=54.7945205479452, Blast_Score=85, Evalue=7e-17, Organism=Drosophila melanogaster, GI45552811, Length=70, Percent_Identity=55.7142857142857, Blast_Score=84, Evalue=9e-17, Organism=Drosophila melanogaster, GI24654066, Length=67, Percent_Identity=55.2238805970149, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI24654070, Length=67, Percent_Identity=55.2238805970149, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI24654068, Length=67, Percent_Identity=55.2238805970149, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI24654072, Length=67, Percent_Identity=55.2238805970149, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI17737735, Length=64, Percent_Identity=53.125, Blast_Score=82, Evalue=6e-16, Organism=Drosophila melanogaster, GI24668523, Length=64, Percent_Identity=53.125, Blast_Score=82, Evalue=6e-16, Organism=Drosophila melanogaster, GI28574723, Length=64, Percent_Identity=53.125, Blast_Score=81, Evalue=7e-16, Organism=Drosophila melanogaster, GI161077138, Length=64, Percent_Identity=56.25, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI20129487, Length=80, Percent_Identity=50, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI24584014, Length=80, Percent_Identity=50, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI21358273, Length=67, Percent_Identity=56.7164179104478, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI21355911, Length=100, Percent_Identity=43, Blast_Score=75, Evalue=7e-14, Organism=Drosophila melanogaster, GI24651439, Length=79, Percent_Identity=40.5063291139241, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI24651436, Length=65, Percent_Identity=47.6923076923077, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI21358311, Length=65, Percent_Identity=47.6923076923077, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI24641698, Length=63, Percent_Identity=49.2063492063492, Blast_Score=72, Evalue=6e-13, Organism=Drosophila melanogaster, GI24641696, Length=63, Percent_Identity=49.2063492063492, Blast_Score=72, Evalue=6e-13, Organism=Drosophila melanogaster, GI24668492, Length=67, Percent_Identity=44.7761194029851, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI24762799, Length=114, Percent_Identity=32.4561403508772, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI21355073, Length=62, Percent_Identity=50, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI21357687, Length=63, Percent_Identity=46.031746031746, Blast_Score=67, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012724 - InterPro: IPR002939 - InterPro: IPR001623 - InterPro: IPR018253 - InterPro: IPR008971 - InterPro: IPR015609 - InterPro: IPR003095 - InterPro: IPR001305 [H]
Pfam domain/function: PF00226 DnaJ; PF01556 DnaJ_C; PF00684 DnaJ_CXXCXGXG [H]
EC number: NA
Molecular weight: Translated: 32676; Mature: 32545
Theoretical pI: Translated: 9.44; Mature: 9.44
Prosite motif: PS00636 DNAJ_1 ; PS50076 DNAJ_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKRDYYEVLGVSKSSTEKEIKKAYKRLAMKYHPDKNQGDAQAADKFKEIKEAYEVLTDP CCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCC DKRGQYDDFGHAAFQNGGNGGFGGGFGGGHSQGFGGFEDIFGSAFGGRSRGGFGSGGFED CCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHH MFSQHRQPRAQKGQDRQFNLTVDFADAIKGCEQIIELPVNGVNKKINVKVPAGIEDGEKI HHHHHCCCHHHCCCCCEEEEEEEHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCEE RFAGKGESGINGGPAGDLLIQINTRPHATLKRDGNDLICPVTTDFVTAALGGEVEIQTLE EEECCCCCCCCCCCCCCEEEEECCCCCCEEECCCCEEEEECHHHHHHHHCCCCEEEEEEC SRFKLKVPAGTQNGRKFRMKEKGVKSRKGVTGDLLVEITVATPTNLTEEQKTLLMKFKEI CCEEEECCCCCCCCCEEEHHHHCCHHHCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHC A C >Mature Secondary Structure SKRDYYEVLGVSKSSTEKEIKKAYKRLAMKYHPDKNQGDAQAADKFKEIKEAYEVLTDP CCCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCC DKRGQYDDFGHAAFQNGGNGGFGGGFGGGHSQGFGGFEDIFGSAFGGRSRGGFGSGGFED CCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHH MFSQHRQPRAQKGQDRQFNLTVDFADAIKGCEQIIELPVNGVNKKINVKVPAGIEDGEKI HHHHHCCCHHHCCCCCEEEEEEEHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCEE RFAGKGESGINGGPAGDLLIQINTRPHATLKRDGNDLICPVTTDFVTAALGGEVEIQTLE EEECCCCCCCCCCCCCCEEEEECCCCCCEEECCCCEEEEECHHHHHHHHCCCCEEEEEEC SRFKLKVPAGTQNGRKFRMKEKGVKSRKGVTGDLLVEITVATPTNLTEEQKTLLMKFKEI CCEEEECCCCCCCCCEEEHHHHCCHHHCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHC A C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 14528314 [H]