| Definition | Vibrio fischeri ES114 chromosome I, complete genome. |
|---|---|
| Accession | NC_006840 |
| Length | 2,897,536 |
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The map label for this gene is pgcA [H]
Identifier: 59711663
GI number: 59711663
Start: 1165494
End: 1167203
Strand: Direct
Name: pgcA [H]
Synonym: VF_1056
Alternate gene names: 59711663
Gene position: 1165494-1167203 (Clockwise)
Preceding gene: 59711661
Following gene: 59711666
Centisome position: 40.22
GC content: 40.88
Gene sequence:
>1710_bases ATGATGCAAAAAGTAACAGAGTGGCTTATGCGAGATCCTGATCCTAAAACTCGTGAAGAGCTTCAGTGTTTGGTTGATAG TCATAATACACAAGAACTAGAAGAGCGTTTTCATTCACGTTTACAATTTGGTACGGCTGGTTTACGAGGTAAAGTCGGCG CAGGGCCAAATAGAATGAATCGTTTAGTGATTCAAGAAACCGCTACTGGGTTGGGACATTACCTTATTGACCAAGTGAAA GATGCTAAGCAACGTGGTGTGGTTGTTGGTTACGATGGAAGAAATGATTCAAAGCAGTTTGCACATGATACCGCGAGTGT TTTAACAGCGCTTGGTATCAAGGTATTTTTAACATCAAAAGTAGCAGCAACACCGATCGTTGCTTTTGGTATTAAACATT TCAATGCGGCTGGTGCTGTGGTTGTTACAGCAAGTCATAACCCACCAGAATACAATGGCTTTAAAGTGTACTGGGAAAAT GGGGCGCAGATTATTCCACCACATGATTCTGGTATTGCGCAAACTATCGATATTGCAGCAACAAAATCGATTGTAATGAT GCCGTTAGATGAAGCCGAAGAAAAAGGGCTACTAGTTTGGTTAGAAGATGATTACTACCAAACTTATCGAAATACAATGA ACAGCAATAAATTGCTTTCTAATCATACTGATCCATCAAGTATAACTATTGCTTATACCGCGATGCATGGCGTGGGTGCT GATATGGCCGAAACGCTATTACGTGATGCAGGCTTTAACCATGTATTTAGTGTGGCAGAGCAAAGAGAGCCTGATGGTAA TTTTCCAACAGTAAACTTCCCCAATCCTGAAGAGGCTGGCGCAATGGACATGGTGGAAGCATTAGCCGCTTCTGCTAATG CTGATATTGCTTGTGCCAATGACCCTGATGCAGACCGATTTGCACTTGCTGCAAGAAAACCTGATGGTGGATATAAAATG CTAACTGGTGACCAAGTAGGTACTTTATTTGGACATTATTTACTAACGCATACAGAAGCAAGCGGGAAACTGGTTGGTAA TACGATTGTGTCATCAACGTTACTTAAAAAAATTGCAGAATCGATGGGAGCTGAATACTTCCAAACATTAACGGGTTTTA AATGGTTAACGAATGTTGCTATGCAAAAAGAGACGAAGGAAAAACAATTTTTATTCGCTTACGAAGAAGCGCTTGGTTAT ACCATTGGGAGTCAAGTTTGGGATAAAGATGGTTTATCTGCTTTAGTTGCCTTTGCACAATTAACGGCGGAATTGGCGAC GCAAGGTAAGTGTGTATGGGATCAATTAGAAAGCATTTATCGTCAGCACGGAATTCATATTAATGCACAACGCAGTATTG CTCTTAACCCTGATTCTCCAGCAATAGGTGAACACTTGCGTGCAAATCCACCAACACACATTGCAGGTGTGAAGATAGAT GTTGTCGAAGATTTAAAAGCATCGTTACGTTATTTACCTGATGGAGCAACAGAATCGATCGATTTACCCGCGAGTGATGT ACTTATTTATCATCTTGAGAATGGGGCTCGAATTATTGTGCGTCCATCAGGAACAGAGCCTAAGTTGAAGTGTTATTACG AAGTAGTGGCAGATATCTCTGAAGGTGAAGATTATTTTGACAAACAAGTGCAAGCTCAAGCCGCGATGGATAATCTTATC GCTGAGCATCAAAAAAGCTTAACATTTTAA
Upstream 100 bases:
>100_bases AGTACTGGTTTTTTATGAGAGTTTAGCGATTGCGTTCTAGTAATTGATAATGTTTATCATTTAGAATCAATGGAAAGATA ATGCTTAAGAGGTTGATATT
Downstream 100 bases:
>100_bases CGTGAGATGAAATAAAAACGGCGAGGATAGAACCTCGCCGTTTTTTTATGCGGTGACAAAAGCACTTAACATCCATACGG CCAGAATGATGAATATTCCG
Product: phosphoglucomutase
Products: NA
Alternate protein names: PGM; Alpha-phosphoglucomutase; Glucose phosphomutase [H]
Number of amino acids: Translated: 569; Mature: 569
Protein sequence:
>569_residues MMQKVTEWLMRDPDPKTREELQCLVDSHNTQELEERFHSRLQFGTAGLRGKVGAGPNRMNRLVIQETATGLGHYLIDQVK DAKQRGVVVGYDGRNDSKQFAHDTASVLTALGIKVFLTSKVAATPIVAFGIKHFNAAGAVVVTASHNPPEYNGFKVYWEN GAQIIPPHDSGIAQTIDIAATKSIVMMPLDEAEEKGLLVWLEDDYYQTYRNTMNSNKLLSNHTDPSSITIAYTAMHGVGA DMAETLLRDAGFNHVFSVAEQREPDGNFPTVNFPNPEEAGAMDMVEALAASANADIACANDPDADRFALAARKPDGGYKM LTGDQVGTLFGHYLLTHTEASGKLVGNTIVSSTLLKKIAESMGAEYFQTLTGFKWLTNVAMQKETKEKQFLFAYEEALGY TIGSQVWDKDGLSALVAFAQLTAELATQGKCVWDQLESIYRQHGIHINAQRSIALNPDSPAIGEHLRANPPTHIAGVKID VVEDLKASLRYLPDGATESIDLPASDVLIYHLENGARIIVRPSGTEPKLKCYYEVVADISEGEDYFDKQVQAQAAMDNLI AEHQKSLTF
Sequences:
>Translated_569_residues MMQKVTEWLMRDPDPKTREELQCLVDSHNTQELEERFHSRLQFGTAGLRGKVGAGPNRMNRLVIQETATGLGHYLIDQVK DAKQRGVVVGYDGRNDSKQFAHDTASVLTALGIKVFLTSKVAATPIVAFGIKHFNAAGAVVVTASHNPPEYNGFKVYWEN GAQIIPPHDSGIAQTIDIAATKSIVMMPLDEAEEKGLLVWLEDDYYQTYRNTMNSNKLLSNHTDPSSITIAYTAMHGVGA DMAETLLRDAGFNHVFSVAEQREPDGNFPTVNFPNPEEAGAMDMVEALAASANADIACANDPDADRFALAARKPDGGYKM LTGDQVGTLFGHYLLTHTEASGKLVGNTIVSSTLLKKIAESMGAEYFQTLTGFKWLTNVAMQKETKEKQFLFAYEEALGY TIGSQVWDKDGLSALVAFAQLTAELATQGKCVWDQLESIYRQHGIHINAQRSIALNPDSPAIGEHLRANPPTHIAGVKID VVEDLKASLRYLPDGATESIDLPASDVLIYHLENGARIIVRPSGTEPKLKCYYEVVADISEGEDYFDKQVQAQAAMDNLI AEHQKSLTF >Mature_569_residues MMQKVTEWLMRDPDPKTREELQCLVDSHNTQELEERFHSRLQFGTAGLRGKVGAGPNRMNRLVIQETATGLGHYLIDQVK DAKQRGVVVGYDGRNDSKQFAHDTASVLTALGIKVFLTSKVAATPIVAFGIKHFNAAGAVVVTASHNPPEYNGFKVYWEN GAQIIPPHDSGIAQTIDIAATKSIVMMPLDEAEEKGLLVWLEDDYYQTYRNTMNSNKLLSNHTDPSSITIAYTAMHGVGA DMAETLLRDAGFNHVFSVAEQREPDGNFPTVNFPNPEEAGAMDMVEALAASANADIACANDPDADRFALAARKPDGGYKM LTGDQVGTLFGHYLLTHTEASGKLVGNTIVSSTLLKKIAESMGAEYFQTLTGFKWLTNVAMQKETKEKQFLFAYEEALGY TIGSQVWDKDGLSALVAFAQLTAELATQGKCVWDQLESIYRQHGIHINAQRSIALNPDSPAIGEHLRANPPTHIAGVKID VVEDLKASLRYLPDGATESIDLPASDVLIYHLENGARIIVRPSGTEPKLKCYYEVVADISEGEDYFDKQVQAQAAMDNLI AEHQKSLTF
Specific function: Catalyzes the interconversion between glucose-6- phosphate and alpha-glucose-1-phosphate. This is the first step in the biosynthesis of diglucosyl-diacylglycerol (Glc2-DAG), i.e. the predominant glycolipid found in B.subtilis membrane, which is also used
COG id: COG1109
COG function: function code G; Phosphomannomutase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphohexose mutase family [H]
Homologues:
Organism=Homo sapiens, GI63055049, Length=569, Percent_Identity=34.622144112478, Blast_Score=325, Evalue=8e-89, Organism=Homo sapiens, GI31377548, Length=572, Percent_Identity=33.7412587412587, Blast_Score=301, Evalue=2e-81, Organism=Escherichia coli, GI1789566, Length=498, Percent_Identity=22.289156626506, Blast_Score=64, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71993870, Length=556, Percent_Identity=34.1726618705036, Blast_Score=300, Evalue=1e-81, Organism=Caenorhabditis elegans, GI71993878, Length=317, Percent_Identity=35.0157728706625, Blast_Score=197, Evalue=2e-50, Organism=Saccharomyces cerevisiae, GI6323934, Length=589, Percent_Identity=34.634974533107, Blast_Score=296, Evalue=7e-81, Organism=Drosophila melanogaster, GI20129809, Length=583, Percent_Identity=35.3344768439108, Blast_Score=318, Evalue=5e-87, Organism=Drosophila melanogaster, GI24651977, Length=562, Percent_Identity=35.0533807829181, Blast_Score=299, Evalue=3e-81, Organism=Drosophila melanogaster, GI24653722, Length=600, Percent_Identity=31, Blast_Score=256, Evalue=3e-68,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005844 - InterPro: IPR016055 - InterPro: IPR005845 - InterPro: IPR005846 - InterPro: IPR005843 - InterPro: IPR016066 - InterPro: IPR005841 [H]
Pfam domain/function: PF02878 PGM_PMM_I; PF02879 PGM_PMM_II; PF02880 PGM_PMM_III; PF00408 PGM_PMM_IV [H]
EC number: =5.4.2.2 [H]
Molecular weight: Translated: 62395; Mature: 62395
Theoretical pI: Translated: 5.02; Mature: 5.02
Prosite motif: PS00710 PGM_PMM
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMQKVTEWLMRDPDPKTREELQCLVDSHNTQELEERFHSRLQFGTAGLRGKVGAGPNRMN CCHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH RLVIQETATGLGHYLIDQVKDAKQRGVVVGYDGRNDSKQFAHDTASVLTALGIKVFLTSK EEEEHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHEEECH VAATPIVAFGIKHFNAAGAVVVTASHNPPEYNGFKVYWENGAQIIPPHDSGIAQTIDIAA HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEEECCCEEECCCCCCCHHEEEHHC TKSIVMMPLDEAEEKGLLVWLEDDYYQTYRNTMNSNKLLSNHTDPSSITIAYTAMHGVGA CCCEEEEECCCCCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEHHCCCH DMAETLLRDAGFNHVFSVAEQREPDGNFPTVNFPNPEEAGAMDMVEALAASANADIACAN HHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECC DPDADRFALAARKPDGGYKMLTGDQVGTLFGHYLLTHTEASGKLVGNTIVSSTLLKKIAE CCCCCCEEEEEECCCCCEEEEECCHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHH SMGAEYFQTLTGFKWLTNVAMQKETKEKQFLFAYEEALGYTIGSQVWDKDGLSALVAFAQ HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH LTAELATQGKCVWDQLESIYRQHGIHINAQRSIALNPDSPAIGEHLRANPPTHIAGVKID HHHHHHHCCCHHHHHHHHHHHHCCCEEECCCEEEECCCCCCHHHHHCCCCCCEEEEEEEH VVEDLKASLRYLPDGATESIDLPASDVLIYHLENGARIIVRPSGTEPKLKCYYEVVADIS HHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHH EGEDYFDKQVQAQAAMDNLIAEHQKSLTF CCHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MMQKVTEWLMRDPDPKTREELQCLVDSHNTQELEERFHSRLQFGTAGLRGKVGAGPNRMN CCHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH RLVIQETATGLGHYLIDQVKDAKQRGVVVGYDGRNDSKQFAHDTASVLTALGIKVFLTSK EEEEHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHEEECH VAATPIVAFGIKHFNAAGAVVVTASHNPPEYNGFKVYWENGAQIIPPHDSGIAQTIDIAA HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEEECCCEEECCCCCCCHHEEEHHC TKSIVMMPLDEAEEKGLLVWLEDDYYQTYRNTMNSNKLLSNHTDPSSITIAYTAMHGVGA CCCEEEEECCCCCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEHHCCCH DMAETLLRDAGFNHVFSVAEQREPDGNFPTVNFPNPEEAGAMDMVEALAASANADIACAN HHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECC DPDADRFALAARKPDGGYKMLTGDQVGTLFGHYLLTHTEASGKLVGNTIVSSTLLKKIAE CCCCCCEEEEEECCCCCEEEEECCHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHH SMGAEYFQTLTGFKWLTNVAMQKETKEKQFLFAYEEALGYTIGSQVWDKDGLSALVAFAQ HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH LTAELATQGKCVWDQLESIYRQHGIHINAQRSIALNPDSPAIGEHLRANPPTHIAGVKID HHHHHHHCCCHHHHHHHHHHHHCCCEEECCCEEEECCCCCCHHHHHCCCCCCEEEEEEEH VVEDLKASLRYLPDGATESIDLPASDVLIYHLENGARIIVRPSGTEPKLKCYYEVVADIS HHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHH EGEDYFDKQVQAQAAMDNLIAEHQKSLTF CCHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377; 2127799 [H]